Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00150 * 2 1 4 4 H 1.48500 * 109.46992 * 240.00319 * 3 2 1 5 5 H 1.48503 * 109.46912 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47210 * 120.00012 * 3 2 1 7 7 C 1.37878 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47419 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47165 * 179.97438 * 10 9 7 12 12 C 1.34226 * 116.99806 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00197 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00039 * 180.02562 * 12 11 10 15 15 C 1.52304 * 115.91549 * 111.38785 * 14 12 11 16 16 C 1.52296 * 115.97673 * 179.63630 * 14 12 11 17 17 H 1.09000 * 117.29463 * 0.63023 * 16 14 12 18 18 C 1.52707 * 119.77980 * 148.98044 * 16 14 12 19 19 C 1.51054 * 111.14387 * 338.60186 * 18 16 14 20 20 C 1.53304 * 108.38912 * 54.59108 * 19 18 16 21 21 C 1.52075 * 114.25998 * 325.71817 * 14 12 11 22 22 H 0.96999 * 119.99915 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46867 * 59.99985 * 9 7 2 24 24 H 1.09003 * 109.46882 * 300.00402 * 9 7 2 25 25 H 1.08998 * 109.46724 * 60.00040 * 10 9 7 26 26 H 1.09000 * 109.46811 * 300.00040 * 10 9 7 27 27 H 1.09002 * 117.53903 * 359.15221 * 15 14 12 28 28 H 1.09002 * 117.53650 * 213.97601 * 15 14 12 29 29 H 1.09004 * 109.35693 * 98.45918 * 18 16 14 30 30 H 1.09000 * 109.36054 * 218.03762 * 18 16 14 31 31 H 1.09000 * 109.61791 * 294.98080 * 19 18 16 32 32 H 1.08997 * 109.95681 * 174.40483 * 19 18 16 33 33 H 1.09001 * 109.61367 * 165.94012 * 20 19 18 34 34 H 1.08999 * 109.61703 * 45.40211 * 20 19 18 35 35 H 1.08994 * 109.27071 * 314.03066 * 21 14 12 36 36 H 1.08992 * 109.27002 * 73.53984 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9196 0.0001 12 6 2.2504 -6.0453 0.0007 13 8 3.4570 -5.9821 0.0002 14 6 1.5662 -7.3881 0.0008 15 6 1.7097 -8.2083 -1.2745 16 6 2.4833 -8.6039 -0.0072 17 1 3.5576 -8.4198 -0.0017 18 6 2.0367 -9.8952 0.6748 19 6 0.9616 -9.6257 1.7011 20 6 -0.1820 -8.8686 1.0161 21 6 0.2615 -7.4245 0.7812 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 2.2774 -7.7692 -2.0949 28 1 0.8679 -8.8357 -1.5675 29 1 1.6383 -10.5801 -0.0738 30 1 2.8920 -10.3587 1.1665 31 1 1.3706 -9.0185 2.5086 32 1 0.5878 -10.5669 2.1041 33 1 -1.0641 -8.8810 1.6563 34 1 -0.4130 -9.3405 0.0611 35 1 0.4035 -6.9310 1.7425 36 1 -0.5095 -6.8993 0.2176 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869701760.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -91.821510 kcal Electronic energy + Delta-G solvation = -16847.865579 eV Core-core repulsion = 14103.681369 eV Total energy + Delta-G solvation = -2744.184210 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.76138 -38.77600 -36.03944 -33.35202 -33.26878 -31.18786 -30.16475 -25.74630 -24.76579 -23.77750 -21.55337 -21.11774 -20.52760 -18.49047 -17.45346 -16.56082 -15.94027 -15.88045 -14.82444 -14.52716 -14.29131 -14.04125 -13.65134 -13.42806 -13.16032 -12.41755 -12.35440 -12.13542 -11.95355 -11.24062 -11.14799 -11.04931 -10.98634 -10.73736 -10.71681 -10.64818 -10.17283 -10.01908 -9.78728 -9.62271 -9.54569 -9.29660 -8.43541 -6.09731 -4.14205 2.46318 3.11357 3.30501 3.34407 3.38184 3.65708 4.38455 4.44481 4.51306 4.66813 4.82898 4.89663 5.08320 5.18169 5.26681 5.35012 5.40073 5.51787 5.63403 5.70469 5.81671 5.92635 5.96322 6.03133 6.10022 6.11489 6.15484 6.21434 6.24834 6.64795 7.01906 7.56576 7.63249 7.87509 8.21093 8.29722 8.91027 9.50078 11.01739 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051788 B = 0.004457 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.539494 B = 6280.193549 C = 6565.004543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.074 3.926 11 O -0.350 6.350 12 C 0.486 3.514 13 O -0.519 6.519 14 C -0.118 4.118 15 C -0.151 4.151 16 C -0.117 4.117 17 H 0.118 0.882 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.121 4.121 21 C -0.079 4.079 22 H 0.264 0.736 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -19.388 0.833 19.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.266 6.266 12 C 0.329 3.671 13 O -0.409 6.409 14 C -0.120 4.120 15 C -0.188 4.188 16 C -0.135 4.135 17 H 0.136 0.864 18 C -0.125 4.125 19 C -0.161 4.161 20 C -0.158 4.158 21 C -0.116 4.116 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.254 -19.181 0.830 19.200 hybrid contribution 0.633 1.185 -0.045 1.344 sum 0.887 -17.995 0.785 18.034 Atomic orbital electron populations 1.69963 1.06089 1.27087 1.49704 1.24976 0.94912 0.99351 0.94841 0.86532 0.79490 0.82482 0.78787 1.20065 1.21098 1.20067 1.20949 0.93138 0.90159 1.52322 0.92339 1.19157 0.94156 0.88980 0.98859 1.23653 0.96418 0.78903 1.00857 1.86517 1.42184 1.15557 1.82305 1.22525 0.85833 0.86358 0.72348 1.90605 1.15730 1.88147 1.46435 1.20663 0.99226 0.87692 1.04371 1.23265 1.02993 1.01740 0.90833 1.22419 0.98314 0.93195 0.99570 0.86426 1.20743 0.98856 0.94739 0.98161 1.21292 0.96059 1.00433 0.98285 1.21647 0.98097 0.95196 1.00874 1.20790 0.93604 0.97203 1.00052 0.92656 0.95358 0.95355 0.92384 0.92409 0.88244 0.87352 0.91359 0.91311 0.91524 0.91634 0.91243 0.91660 0.90793 0.90106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -15.05 9.11 -34.44 -0.31 -15.36 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.68 5.35 -27.88 -0.15 0.53 16 10 C 0.07 1.71 5.40 37.16 0.20 1.91 16 11 O -0.35 -7.32 9.86 -39.25 -0.39 -7.71 16 12 C 0.49 9.06 7.36 36.01 0.27 9.33 16 13 O -0.52 -10.82 15.83 -18.75 -0.30 -11.12 16 14 C -0.12 -1.64 2.51 -156.85 -0.39 -2.04 16 15 C -0.15 -1.73 9.28 -26.75 -0.25 -1.98 16 16 C -0.12 -1.37 5.72 -90.79 -0.52 -1.88 16 17 H 0.12 1.53 7.51 -51.93 -0.39 1.14 16 18 C -0.09 -0.77 5.67 -27.86 -0.16 -0.93 16 19 C -0.12 -1.07 5.89 -27.55 -0.16 -1.23 16 20 C -0.12 -1.10 5.70 -26.64 -0.15 -1.26 16 21 C -0.08 -0.97 5.18 -27.26 -0.14 -1.11 16 22 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 24 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 26 H 0.06 1.32 8.13 -51.93 -0.42 0.90 16 27 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.11 0.99 7.26 -51.93 -0.38 0.62 16 29 H 0.07 0.51 8.06 -51.93 -0.42 0.10 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.64 8.04 -51.93 -0.42 0.22 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.54 7.10 -51.93 -0.37 0.17 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 297.89 15.07 4.49 4.49 Total: -1.00 -31.10 297.89 -8.09 -39.18 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -5.74 Total: -3.23 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -1.87 Total: -12.35 kcal Atomic # 7 Polarization: -26.55 SS G_CDS: 0.74 Total: -25.81 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.68 Total: -18.82 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -31.10 -8.09 -39.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869701760.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.637 kcal (2) G-P(sol) polarization free energy of solvation -31.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds