Wall clock time and date at job start Sun Mar 29 2020 22:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00150 * 2 1 4 4 H 1.48500 * 109.46992 * 240.00319 * 3 2 1 5 5 H 1.48503 * 109.46912 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47210 * 120.00012 * 3 2 1 7 7 C 1.37878 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00227 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00077 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47419 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47165 * 179.97438 * 10 9 7 12 12 C 1.34226 * 116.99806 * 180.02562 * 11 10 9 13 13 O 1.20826 * 120.00197 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00039 * 180.02562 * 12 11 10 15 15 C 1.52304 * 115.91549 * 111.38785 * 14 12 11 16 16 C 1.52296 * 115.97673 * 179.63630 * 14 12 11 17 17 H 1.09000 * 117.29463 * 0.63023 * 16 14 12 18 18 C 1.52707 * 119.77980 * 148.98044 * 16 14 12 19 19 C 1.51054 * 111.14387 * 338.60186 * 18 16 14 20 20 C 1.53304 * 108.38912 * 54.59108 * 19 18 16 21 21 C 1.52075 * 114.25998 * 325.71817 * 14 12 11 22 22 H 0.96999 * 119.99915 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46867 * 59.99985 * 9 7 2 24 24 H 1.09003 * 109.46882 * 300.00402 * 9 7 2 25 25 H 1.08998 * 109.46724 * 60.00040 * 10 9 7 26 26 H 1.09000 * 109.46811 * 300.00040 * 10 9 7 27 27 H 1.09002 * 117.53903 * 359.15221 * 15 14 12 28 28 H 1.09002 * 117.53650 * 213.97601 * 15 14 12 29 29 H 1.09004 * 109.35693 * 98.45918 * 18 16 14 30 30 H 1.09000 * 109.36054 * 218.03762 * 18 16 14 31 31 H 1.09000 * 109.61791 * 294.98080 * 19 18 16 32 32 H 1.08997 * 109.95681 * 174.40483 * 19 18 16 33 33 H 1.09001 * 109.61367 * 165.94012 * 20 19 18 34 34 H 1.08999 * 109.61703 * 45.40211 * 20 19 18 35 35 H 1.08994 * 109.27071 * 314.03066 * 21 14 12 36 36 H 1.08992 * 109.27002 * 73.53984 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5193 -4.9196 0.0001 12 6 2.2504 -6.0453 0.0007 13 8 3.4570 -5.9821 0.0002 14 6 1.5662 -7.3881 0.0008 15 6 1.7097 -8.2083 -1.2745 16 6 2.4833 -8.6039 -0.0072 17 1 3.5576 -8.4198 -0.0017 18 6 2.0367 -9.8952 0.6748 19 6 0.9616 -9.6257 1.7011 20 6 -0.1820 -8.8686 1.0161 21 6 0.2615 -7.4245 0.7812 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5567 -0.8903 24 1 0.6247 -2.5570 0.8897 25 1 2.8719 -3.6043 0.8895 26 1 2.8719 -3.6043 -0.8905 27 1 2.2774 -7.7692 -2.0949 28 1 0.8679 -8.8357 -1.5675 29 1 1.6383 -10.5801 -0.0738 30 1 2.8920 -10.3587 1.1665 31 1 1.3706 -9.0185 2.5086 32 1 0.5878 -10.5669 2.1041 33 1 -1.0641 -8.8810 1.6563 34 1 -0.4130 -9.3405 0.0611 35 1 0.4035 -6.9310 1.7425 36 1 -0.5095 -6.8993 0.2176 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869701760.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:49 Heat of formation + Delta-G solvation = -108.359261 kcal Electronic energy + Delta-G solvation = -16848.582710 eV Core-core repulsion = 14103.681369 eV Total energy + Delta-G solvation = -2744.901341 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.06103 -40.03929 -37.69024 -35.48815 -34.14080 -32.53448 -31.77685 -27.48612 -25.94733 -25.03771 -22.99799 -22.44879 -21.86491 -19.60842 -18.85788 -18.29136 -17.77010 -17.55036 -16.56924 -15.75747 -15.21202 -15.07920 -14.88530 -14.73128 -14.41896 -14.29515 -13.69777 -13.23540 -13.06287 -12.97431 -12.93709 -12.61186 -12.58796 -11.97248 -11.90403 -11.73754 -11.60154 -11.54307 -11.49127 -11.17710 -10.87249 -10.72516 -10.63628 -8.29387 -6.43462 1.00794 1.39013 1.43244 1.50766 1.65939 2.38098 2.62668 3.04691 3.42102 3.62125 3.63688 3.79287 4.05832 4.14407 4.17358 4.23797 4.34189 4.50639 4.58466 4.62423 4.69993 4.73529 4.95002 5.03002 5.07833 5.20218 5.24418 5.28726 5.32734 5.39226 5.41098 5.49795 5.52291 5.69847 6.02801 6.65471 6.70507 7.26453 8.83095 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051788 B = 0.004457 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.539494 B = 6280.193549 C = 6565.004543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.266 1.266 7 C -0.555 4.555 8 H 0.064 0.936 9 C 0.033 3.967 10 C 0.089 3.911 11 O -0.359 6.359 12 C 0.480 3.520 13 O -0.546 6.546 14 C -0.139 4.139 15 C -0.136 4.136 16 C -0.107 4.107 17 H 0.100 0.900 18 C -0.084 4.084 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.078 4.078 22 H 0.269 0.731 23 H 0.007 0.993 24 H 0.006 0.994 25 H 0.057 0.943 26 H 0.058 0.942 27 H 0.091 0.909 28 H 0.141 0.859 29 H 0.092 0.908 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.204 -20.861 0.661 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.592 4.592 8 H 0.082 0.918 9 C -0.004 4.004 10 C 0.016 3.984 11 O -0.275 6.275 12 C 0.325 3.675 13 O -0.437 6.437 14 C -0.140 4.140 15 C -0.173 4.173 16 C -0.126 4.126 17 H 0.118 0.882 18 C -0.121 4.121 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.116 4.116 22 H 0.078 0.922 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.159 0.841 29 H 0.111 0.889 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.074 0.926 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.397 -20.680 0.659 20.694 hybrid contribution 0.585 1.594 0.003 1.698 sum 0.982 -19.085 0.663 19.122 Atomic orbital electron populations 1.70086 1.07830 1.28435 1.50101 1.25970 0.95858 1.03411 0.93887 0.85360 0.78205 0.77321 0.79319 1.19033 1.20247 1.19068 1.21335 0.93659 0.91244 1.52974 0.91798 1.18959 0.94238 0.90516 0.96665 1.23185 0.95192 0.79305 1.00737 1.86517 1.42454 1.15666 1.82852 1.23603 0.85842 0.87071 0.70972 1.90579 1.16944 1.88472 1.47719 1.20844 1.00451 0.85349 1.07385 1.23457 1.03618 1.00412 0.89765 1.22548 0.97109 0.93156 0.99765 0.88191 1.20809 0.99453 0.93168 0.98699 1.21311 0.95719 1.01219 0.97747 1.21649 0.98628 0.92697 1.02145 1.20805 0.92514 0.99610 0.98660 0.92233 0.97510 0.97542 0.92490 0.92389 0.89068 0.84124 0.88925 0.90324 0.93129 0.89133 0.90092 0.89899 0.92611 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.78 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.97 44.11 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.55 -32.24 9.11 25.60 0.23 -32.01 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.86 5.35 29.85 0.16 2.02 16 10 C 0.09 4.26 5.40 71.98 0.39 4.64 16 11 O -0.36 -15.60 9.86 -51.38 -0.51 -16.10 16 12 C 0.48 18.35 7.36 71.24 0.52 18.87 16 13 O -0.55 -23.35 15.83 21.96 0.35 -23.01 16 14 C -0.14 -3.80 2.51 -53.70 -0.13 -3.93 16 15 C -0.14 -2.84 9.28 30.58 0.28 -2.56 16 16 C -0.11 -2.34 5.72 -10.90 -0.06 -2.41 16 17 H 0.10 2.55 7.51 -2.39 -0.02 2.54 16 18 C -0.08 -1.21 5.67 29.86 0.17 -1.04 16 19 C -0.12 -1.76 5.89 30.06 0.18 -1.58 16 20 C -0.11 -1.77 5.70 30.66 0.17 -1.60 16 21 C -0.08 -1.87 5.18 30.25 0.16 -1.72 16 22 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 23 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 24 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 25 H 0.06 2.70 8.13 -2.39 -0.02 2.68 16 26 H 0.06 2.74 8.13 -2.39 -0.02 2.72 16 27 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.14 2.03 7.26 -2.39 -0.02 2.02 16 29 H 0.09 0.95 8.06 -2.39 -0.02 0.93 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.89 8.04 -2.39 -0.02 0.87 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.03 7.10 -2.39 -0.02 1.01 16 35 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.31 297.89 5.73 -62.58 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: 1.04 Total: 6.54 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 2.53 Total: -20.37 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.28 Total: -55.78 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.16 Total: -39.11 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -68.31 5.73 -62.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869701760.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.777 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds