Wall clock time and date at job start Sun Mar 29 2020 22:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.34230 * 116.99614 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99717 * 179.97438 * 12 11 10 15 15 C 1.52297 * 115.91475 * 248.29137 * 14 12 11 16 16 C 1.52070 * 115.92793 * 179.97438 * 14 12 11 17 17 H 1.09000 * 117.25530 * 359.37189 * 16 14 12 18 18 C 1.52713 * 120.52089 * 210.73962 * 16 14 12 19 19 C 1.52875 * 110.15406 * 21.47702 * 18 16 14 20 20 C 1.53303 * 108.57982 * 305.47685 * 19 18 16 21 21 C 1.52076 * 114.63652 * 33.38588 * 14 12 11 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08998 * 117.53850 * 0.84964 * 15 14 12 28 28 H 1.09004 * 117.54042 * 146.09730 * 15 14 12 29 29 H 1.09003 * 109.35280 * 141.68591 * 18 16 14 30 30 H 1.08999 * 109.35521 * 261.26580 * 18 16 14 31 31 H 1.08997 * 109.61648 * 65.20409 * 19 18 16 32 32 H 1.08996 * 109.61827 * 185.74703 * 19 18 16 33 33 H 1.09000 * 109.61527 * 194.17461 * 20 19 18 34 34 H 1.09003 * 109.61561 * 314.52699 * 20 19 18 35 35 H 1.08990 * 109.26936 * 285.89387 * 21 14 12 36 36 H 1.09003 * 109.26861 * 45.36195 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 8 5.4736 -2.6364 0.0022 12 6 6.0830 -3.8324 0.0037 13 8 5.4250 -4.8457 0.0046 14 6 7.5880 -3.9112 0.0032 15 6 8.2256 -4.4539 -1.2690 16 6 8.1805 -5.3117 0.0056 17 1 7.4826 -6.1489 0.0182 18 6 9.5243 -5.5842 0.6779 19 6 9.8295 -4.4946 1.7059 20 6 9.7450 -3.1305 1.0115 21 6 8.2818 -2.7906 0.7619 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 7.5610 -4.7313 -2.0871 28 1 9.1902 -4.0413 -1.5649 29 1 9.4886 -6.5524 1.1774 30 1 10.3099 -5.5984 -0.0775 31 1 9.0998 -4.5396 2.5144 32 1 10.8327 -4.6400 2.1064 33 1 10.1973 -2.3683 1.6460 34 1 10.2713 -3.1721 0.0579 35 1 8.2234 -1.8716 0.1789 36 1 7.7820 -2.6411 1.7190 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869701762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:53 Heat of formation + Delta-G solvation = -88.083950 kcal Electronic energy + Delta-G solvation = -16901.190826 eV Core-core repulsion = 14157.168688 eV Total energy + Delta-G solvation = -2744.022137 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.83124 -38.84231 -36.14836 -33.33357 -33.26756 -31.28699 -30.60221 -25.95364 -24.85046 -23.79665 -21.60171 -20.94106 -20.56356 -18.53692 -17.55249 -16.91187 -16.14327 -15.99092 -14.86064 -14.36995 -14.20435 -14.12149 -13.76420 -13.53690 -13.33452 -12.73182 -12.39202 -12.21993 -12.04061 -11.51158 -11.27859 -11.20464 -11.05338 -10.76224 -10.69019 -10.50658 -10.17216 -9.95362 -9.87413 -9.76466 -9.69076 -9.34689 -8.62548 -6.13136 -4.14342 2.37930 3.01872 3.27698 3.34978 3.39569 3.59377 4.38424 4.38865 4.45054 4.58539 4.76808 4.83136 5.00512 5.10225 5.20441 5.28179 5.34306 5.44736 5.56937 5.64365 5.75514 5.86539 5.90040 5.96085 5.97233 5.98604 6.07929 6.13226 6.18526 6.45446 6.80591 7.19404 7.22171 7.62341 8.16246 8.39660 8.88503 9.46448 10.99486 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.004947 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.293888 B = 5659.039611 C = 6059.149993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.073 3.927 3 Si 0.881 3.119 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.081 3.919 11 O -0.354 6.354 12 C 0.488 3.512 13 O -0.515 6.515 14 C -0.118 4.118 15 C -0.153 4.153 16 C -0.117 4.117 17 H 0.118 0.882 18 C -0.088 4.088 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.079 4.079 22 H 0.266 0.734 23 H 0.028 0.972 24 H 0.024 0.976 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.815 -7.231 0.860 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.046 4.046 10 C 0.009 3.991 11 O -0.270 6.270 12 C 0.331 3.669 13 O -0.404 6.404 14 C -0.119 4.119 15 C -0.190 4.190 16 C -0.135 4.135 17 H 0.136 0.864 18 C -0.126 4.126 19 C -0.160 4.160 20 C -0.158 4.158 21 C -0.117 4.117 22 H 0.076 0.924 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.118 0.882 28 H 0.127 0.873 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.396 -7.382 0.858 22.650 hybrid contribution -0.047 0.833 -0.072 0.837 sum 21.349 -6.549 0.786 22.345 Atomic orbital electron populations 1.69896 1.06286 1.27210 1.50135 1.24934 0.94760 0.99172 0.94108 0.86749 0.80432 0.83269 0.78754 1.20041 1.21148 1.18759 1.20848 0.88293 0.95049 1.52375 0.90671 1.19616 0.96982 0.90132 0.97869 1.23397 0.72368 1.01608 1.01732 1.86475 1.26079 1.31883 1.82585 1.22477 0.89920 0.82100 0.72433 1.90624 1.66849 1.36835 1.46105 1.20612 0.88577 0.98125 1.04564 1.23289 1.02372 1.02511 0.90826 1.22383 0.98848 0.92779 0.99467 0.86448 1.21101 0.94242 0.99079 0.98150 1.21598 1.01569 0.94649 0.98191 1.21518 0.96083 0.97304 1.00873 1.20671 0.94759 0.95993 1.00232 0.92427 0.95385 0.95810 0.91790 0.91722 0.88219 0.87322 0.91195 0.91209 0.91457 0.91662 0.91215 0.91731 0.90250 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.76 16 2 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.53 -15.18 9.66 -34.44 -0.33 -15.51 16 8 H 0.08 2.31 7.99 -52.49 -0.42 1.90 16 9 C -0.01 -0.21 4.42 -27.89 -0.12 -0.33 16 10 C 0.08 1.80 5.40 37.16 0.20 2.00 16 11 O -0.35 -6.98 9.86 -39.26 -0.39 -7.37 16 12 C 0.49 8.70 7.38 36.01 0.27 8.97 16 13 O -0.51 -10.43 15.82 -18.75 -0.30 -10.73 16 14 C -0.12 -1.55 2.51 -156.96 -0.39 -1.94 16 15 C -0.15 -1.66 9.27 -26.72 -0.25 -1.91 16 16 C -0.12 -1.30 5.66 -90.87 -0.51 -1.82 16 17 H 0.12 1.48 7.50 -51.93 -0.39 1.09 16 18 C -0.09 -0.74 5.83 -26.94 -0.16 -0.89 16 19 C -0.12 -1.00 5.93 -26.64 -0.16 -1.16 16 20 C -0.12 -1.02 5.67 -26.94 -0.15 -1.18 16 21 C -0.08 -0.90 5.17 -27.57 -0.14 -1.04 16 22 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 23 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 24 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 25 H 0.06 1.42 8.13 -51.93 -0.42 1.00 16 26 H 0.06 1.44 8.13 -51.93 -0.42 1.01 16 27 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.11 0.93 7.27 -51.93 -0.38 0.56 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.49 8.06 -51.93 -0.42 0.08 16 31 H 0.07 0.61 8.06 -51.93 -0.42 0.20 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.50 7.12 -51.93 -0.37 0.13 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 294.42 15.07 4.44 4.44 Total: -1.00 -31.55 294.42 -7.70 -39.26 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.71 Total: -2.89 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -1.85 Total: -12.81 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.77 Total: -26.76 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.68 Total: -18.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.55 -7.70 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869701762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.828 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds