Wall clock time and date at job start Sun Mar 29 2020 22:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99787 * 2 1 4 4 H 1.48504 * 109.47052 * 269.99279 * 3 2 1 5 5 H 1.48495 * 109.47307 * 29.99218 * 3 2 1 6 6 H 1.48500 * 109.47143 * 149.99726 * 3 2 1 7 7 C 1.37876 * 120.00362 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.34230 * 116.99614 * 179.97438 * 11 10 9 13 13 O 1.20824 * 120.00179 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99717 * 179.97438 * 12 11 10 15 15 C 1.52297 * 115.91475 * 248.29137 * 14 12 11 16 16 C 1.52070 * 115.92793 * 179.97438 * 14 12 11 17 17 H 1.09000 * 117.25530 * 359.37189 * 16 14 12 18 18 C 1.52713 * 120.52089 * 210.73962 * 16 14 12 19 19 C 1.52875 * 110.15406 * 21.47702 * 18 16 14 20 20 C 1.53303 * 108.57982 * 305.47685 * 19 18 16 21 21 C 1.52076 * 114.63652 * 33.38588 * 14 12 11 22 22 H 0.96994 * 119.99814 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 24 24 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 25 25 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 26 26 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 27 27 H 1.08998 * 117.53850 * 0.84964 * 15 14 12 28 28 H 1.09004 * 117.54042 * 146.09730 * 15 14 12 29 29 H 1.09003 * 109.35280 * 141.68591 * 18 16 14 30 30 H 1.08999 * 109.35521 * 261.26580 * 18 16 14 31 31 H 1.08997 * 109.61648 * 65.20409 * 19 18 16 32 32 H 1.08996 * 109.61827 * 185.74703 * 19 18 16 33 33 H 1.09000 * 109.61527 * 194.17461 * 20 19 18 34 34 H 1.09003 * 109.61561 * 314.52699 * 20 19 18 35 35 H 1.08990 * 109.26936 * 285.89387 * 21 14 12 36 36 H 1.09003 * 109.26861 * 45.36195 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6528 0.6998 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0217 -2.6365 0.0023 11 8 5.4736 -2.6364 0.0022 12 6 6.0830 -3.8324 0.0037 13 8 5.4250 -4.8457 0.0046 14 6 7.5880 -3.9112 0.0032 15 6 8.2256 -4.4539 -1.2690 16 6 8.1805 -5.3117 0.0056 17 1 7.4826 -6.1489 0.0182 18 6 9.5243 -5.5842 0.6779 19 6 9.8295 -4.4946 1.7059 20 6 9.7450 -3.1305 1.0115 21 6 8.2818 -2.7906 0.7619 22 1 -0.4849 0.8400 -0.0004 23 1 3.8746 -0.6799 0.8911 24 1 3.8752 -0.6803 -0.8888 25 1 3.6587 -3.1509 -0.8875 26 1 3.6580 -3.1497 0.8925 27 1 7.5610 -4.7313 -2.0871 28 1 9.1902 -4.0413 -1.5649 29 1 9.4886 -6.5524 1.1774 30 1 10.3099 -5.5984 -0.0775 31 1 9.0998 -4.5396 2.5144 32 1 10.8327 -4.6400 2.1064 33 1 10.1973 -2.3683 1.6460 34 1 10.2713 -3.1721 0.0579 35 1 8.2234 -1.8716 0.1789 36 1 7.7820 -2.6411 1.7190 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869701762.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:53 Heat of formation + Delta-G solvation = -105.773347 kcal Electronic energy + Delta-G solvation = -16901.957895 eV Core-core repulsion = 14157.168688 eV Total energy + Delta-G solvation = -2744.789207 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07144 -40.02705 -37.72219 -35.43618 -34.08264 -32.90163 -31.84751 -27.66570 -25.89406 -25.00015 -22.70751 -22.43617 -21.91570 -19.63653 -19.09445 -18.47951 -17.78457 -17.58379 -16.36128 -15.77381 -15.27649 -15.18902 -14.90573 -14.81456 -14.56874 -14.28434 -13.71097 -13.40750 -13.14260 -12.98097 -12.95935 -12.52831 -12.44405 -11.96029 -11.84022 -11.76416 -11.63487 -11.56919 -11.50587 -11.19775 -10.85435 -10.83936 -10.74141 -8.37171 -6.46048 0.99507 1.36382 1.38249 1.51098 1.60355 2.32382 2.62652 2.97491 3.41824 3.58965 3.63504 3.78065 4.07560 4.09678 4.13183 4.23122 4.33698 4.49274 4.55991 4.58230 4.70540 4.73852 4.91638 5.02836 5.04263 5.07864 5.23333 5.24471 5.28494 5.31117 5.38920 5.46402 5.49777 5.52664 6.12210 6.59571 6.64694 7.19260 8.79062 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.042589 B = 0.004947 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.293888 B = 5659.039611 C = 6059.149993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.245 1.245 7 C -0.546 4.546 8 H 0.033 0.967 9 C -0.001 4.001 10 C 0.092 3.908 11 O -0.354 6.354 12 C 0.481 3.519 13 O -0.547 6.547 14 C -0.135 4.135 15 C -0.137 4.137 16 C -0.112 4.112 17 H 0.096 0.904 18 C -0.084 4.084 19 C -0.123 4.123 20 C -0.114 4.114 21 C -0.078 4.078 22 H 0.272 0.728 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.142 0.858 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.491 -6.221 0.665 26.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.168 1.168 7 C -0.583 4.583 8 H 0.052 0.948 9 C -0.038 4.038 10 C 0.018 3.982 11 O -0.270 6.270 12 C 0.326 3.674 13 O -0.437 6.437 14 C -0.136 4.136 15 C -0.173 4.173 16 C -0.130 4.130 17 H 0.115 0.885 18 C -0.121 4.121 19 C -0.160 4.160 20 C -0.151 4.151 21 C -0.115 4.115 22 H 0.080 0.920 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.160 0.840 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.092 -6.392 0.664 25.902 hybrid contribution -1.261 0.385 -0.017 1.319 sum 23.831 -6.007 0.647 24.585 Atomic orbital electron populations 1.70040 1.08347 1.28722 1.51200 1.25958 0.95680 1.03600 0.93257 0.85589 0.79497 0.77563 0.79643 1.18636 1.20385 1.16818 1.21103 0.90663 0.93836 1.52741 0.94817 1.19443 0.94203 0.91679 0.98495 1.22970 0.74259 1.00041 1.00888 1.86469 1.24248 1.33288 1.82995 1.23582 0.91940 0.80895 0.70972 1.90606 1.68024 1.37543 1.47578 1.20795 0.85015 1.00402 1.07410 1.23471 1.03076 1.01072 0.89721 1.22492 0.99723 0.90835 0.99957 0.88550 1.21164 0.92755 0.99525 0.98705 1.21617 1.02408 0.94340 0.97637 1.21521 0.93738 0.97796 1.02085 1.20705 0.96632 0.95182 0.99029 0.91953 0.94622 0.94674 0.92650 0.92739 0.89171 0.84002 0.90514 0.88850 0.93071 0.89351 0.89929 0.90017 0.90447 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.21 13.96 21.45 0.30 -58.91 16 2 C 0.01 0.78 5.47 84.65 0.46 1.24 16 3 Si 0.96 43.76 27.47 68.60 1.88 45.65 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.24 -10.43 6.54 99.48 0.65 -9.78 16 7 C -0.55 -32.27 9.66 25.60 0.25 -32.03 16 8 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 9 C 0.00 -0.04 4.42 29.85 0.13 0.09 16 10 C 0.09 4.15 5.40 71.98 0.39 4.54 16 11 O -0.35 -14.02 9.86 -51.42 -0.51 -14.52 16 12 C 0.48 17.35 7.38 71.24 0.53 17.87 16 13 O -0.55 -22.87 15.82 21.97 0.35 -22.53 16 14 C -0.14 -3.40 2.51 -53.77 -0.13 -3.54 16 15 C -0.14 -2.63 9.27 30.60 0.28 -2.35 16 16 C -0.11 -2.31 5.66 -10.96 -0.06 -2.38 16 17 H 0.10 2.41 7.50 -2.39 -0.02 2.40 16 18 C -0.08 -1.13 5.83 30.46 0.18 -0.95 16 19 C -0.12 -1.60 5.93 30.65 0.18 -1.42 16 20 C -0.11 -1.53 5.67 30.46 0.17 -1.36 16 21 C -0.08 -1.63 5.17 30.05 0.16 -1.48 16 22 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 23 H 0.04 1.69 7.20 -2.39 -0.02 1.68 16 24 H 0.03 1.64 7.57 -2.39 -0.02 1.62 16 25 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 26 H 0.05 2.53 8.13 -2.39 -0.02 2.52 16 27 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.14 1.80 7.27 -2.38 -0.02 1.78 16 29 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 30 H 0.09 0.87 8.06 -2.39 -0.02 0.85 16 31 H 0.05 0.84 8.06 -2.39 -0.02 0.82 16 32 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.85 7.12 -2.39 -0.02 0.84 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -70.14 294.42 5.55 -64.60 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 0.99 Total: 7.45 kcal Atomic # 6 Polarization: -24.28 SS G_CDS: 2.53 Total: -21.74 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.30 Total: -58.91 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.16 Total: -37.05 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Total: -70.14 5.55 -64.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869701762.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.176 kcal (2) G-P(sol) polarization free energy of solvation -70.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds