Wall clock time and date at job start Sun Mar 29 2020 22:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46904 * 2 1 4 4 C 1.50702 * 109.47193 * 240.00382 * 2 1 3 5 5 H 1.08000 * 119.99417 * 239.99459 * 4 2 1 6 6 C 1.37872 * 120.00258 * 60.00047 * 4 2 1 7 7 N 1.31520 * 119.99975 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00103 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47180 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47237 * 119.99707 * 8 6 4 11 11 H 1.48503 * 109.47440 * 239.99576 * 8 6 4 12 12 O 1.45199 * 109.47276 * 120.00292 * 2 1 3 13 13 C 1.34237 * 116.99632 * 269.99976 * 12 2 1 14 14 O 1.20822 * 120.00236 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99635 * 180.02562 * 13 12 2 16 16 H 1.09007 * 115.56114 * 303.90102 * 15 13 12 17 17 C 1.53071 * 117.51431 * 158.20482 * 15 13 12 18 18 C 1.52991 * 117.49973 * 89.59301 * 15 13 12 19 19 H 1.09000 * 117.50203 * 215.00114 * 18 15 13 20 20 C 1.53001 * 117.50132 * 0.02562 * 18 15 13 21 21 H 1.09000 * 115.54643 * 339.46541 * 20 18 15 22 22 C 1.53071 * 117.51453 * 193.74581 * 20 18 15 23 23 C 1.52998 * 117.50027 * 125.13316 * 20 18 15 24 24 H 1.09004 * 117.49422 * 215.00047 * 23 20 18 25 25 C 1.52991 * 117.50048 * 0.02562 * 23 20 18 26 26 H 1.09000 * 109.47226 * 59.99823 * 1 2 3 27 27 H 1.08998 * 109.46675 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47433 * 299.99848 * 1 2 3 29 29 H 0.96994 * 119.99729 * 180.02562 * 7 6 4 30 30 H 1.08992 * 117.49943 * 145.03012 * 17 15 13 31 31 H 1.09009 * 117.52996 * 359.97438 * 17 15 13 32 32 H 1.09003 * 117.51554 * 145.04463 * 22 20 18 33 33 H 1.08994 * 117.49328 * 0.02562 * 22 20 18 34 34 H 1.08999 * 109.47451 * 59.90849 * 25 23 20 35 35 H 1.09004 * 109.47258 * 179.91260 * 25 23 20 36 36 H 1.09003 * 109.47275 * 299.90939 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2868 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9973 1.2517 2.2506 15 6 2.7194 -0.5771 3.5491 16 1 2.1164 -1.4014 3.9302 17 6 3.4080 0.3275 4.5742 18 6 4.2342 -0.6595 3.7471 19 1 4.6280 -1.5381 4.2580 20 6 5.1233 -0.0842 2.6428 21 1 4.6509 0.0216 1.6662 22 6 6.6109 -0.4437 2.6734 23 6 6.1572 0.9694 3.0453 24 1 6.3649 1.7683 2.3334 25 6 6.2232 1.3667 4.5212 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7082 1.1609 -3.4844 30 1 3.2578 0.0981 5.6290 31 1 3.4983 1.3864 4.3315 32 1 7.1172 -0.5744 1.7170 33 1 6.9557 -1.0904 3.4802 34 1 6.4555 0.4886 5.1238 35 1 6.9998 2.1188 4.6607 36 1 5.2615 1.7757 4.8308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:41 Heat of formation + Delta-G solvation = -49.953825 kcal Electronic energy + Delta-G solvation = -17240.752311 eV Core-core repulsion = 14498.383620 eV Total energy + Delta-G solvation = -2742.368691 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96805 -38.30223 -35.90542 -34.83040 -33.21740 -29.59259 -28.63097 -25.36523 -24.86007 -23.52200 -21.30600 -21.10977 -19.82159 -18.64276 -16.76634 -16.52919 -16.11034 -15.53613 -14.84710 -14.49250 -14.21602 -13.60300 -13.22433 -12.86843 -12.37133 -12.22077 -12.05593 -11.66283 -11.40734 -11.26031 -11.13024 -11.06384 -10.85095 -10.61563 -10.58082 -10.33671 -10.26858 -9.68816 -9.58482 -9.49217 -9.34357 -8.87453 -8.48532 -6.17609 -4.24230 2.92683 3.23748 3.30260 3.35093 3.57389 3.74157 4.09155 4.34177 4.57082 4.87312 4.88650 5.06434 5.15430 5.21961 5.34232 5.39825 5.59264 5.69129 5.82858 5.83866 5.87188 5.92865 6.07914 6.14001 6.26200 6.36660 6.44563 6.66581 6.90515 6.93859 7.20482 7.61910 7.74653 7.96362 8.16218 8.68655 8.93175 9.41417 10.89985 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.006679 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.154268 B = 4191.254971 C = 4787.234736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.214 3.786 3 H 0.045 0.955 4 C -0.518 4.518 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.910 3.090 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.282 1.282 12 O -0.352 6.352 13 C 0.484 3.516 14 O -0.519 6.519 15 C -0.158 4.158 16 H 0.132 0.868 17 C -0.146 4.146 18 C -0.092 4.092 19 H 0.114 0.886 20 C -0.128 4.128 21 H 0.112 0.888 22 C -0.169 4.169 23 C -0.150 4.150 24 H 0.102 0.898 25 C -0.122 4.122 26 H 0.099 0.901 27 H 0.037 0.963 28 H 0.015 0.985 29 H 0.265 0.735 30 H 0.103 0.897 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -2.313 12.476 14.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.162 3.838 3 H 0.063 0.937 4 C -0.556 4.556 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.737 3.263 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.208 1.208 12 O -0.268 6.268 13 C 0.326 3.674 14 O -0.409 6.409 15 C -0.177 4.177 16 H 0.149 0.851 17 C -0.183 4.183 18 C -0.110 4.110 19 H 0.132 0.868 20 C -0.146 4.146 21 H 0.130 0.870 22 C -0.206 4.206 23 C -0.168 4.168 24 H 0.120 0.880 25 C -0.179 4.179 26 H 0.117 0.883 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.075 0.925 30 H 0.121 0.879 31 H 0.127 0.873 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.652 -1.850 12.261 14.570 hybrid contribution 0.038 -0.360 -1.000 1.063 sum 7.689 -2.210 11.261 13.814 Atomic orbital electron populations 1.22160 0.97632 1.00099 1.01386 1.20633 0.91387 0.93876 0.77929 0.93689 1.21068 1.32310 1.13394 0.88871 0.91265 1.24890 0.94965 0.95104 0.99067 1.69914 1.36171 1.22654 1.24030 0.86236 0.78651 0.79519 0.81847 1.19457 1.20690 1.20769 1.86496 1.75596 1.43600 1.21134 1.22219 0.74495 0.85392 0.85252 1.90586 1.48826 1.16914 1.84617 1.21903 0.96923 1.03919 0.94973 0.85063 1.23177 1.01115 0.98160 0.95865 1.21748 0.89484 1.00690 0.99086 0.86788 1.21899 0.90454 1.03062 0.99233 0.87036 1.23100 0.96614 0.98002 1.02901 1.22356 1.03717 0.92636 0.98059 0.87972 1.21419 1.01983 1.01030 0.93452 0.88260 0.94432 0.96541 0.92479 0.87864 0.87282 0.88783 0.88848 0.92650 0.92714 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 9.33 37.16 0.35 -3.69 16 2 C 0.21 5.88 2.56 -27.88 -0.07 5.81 16 3 H 0.05 1.36 7.16 -51.92 -0.37 0.99 16 4 C -0.52 -14.76 8.90 -34.44 -0.31 -15.07 16 5 H 0.07 1.95 7.81 -52.49 -0.41 1.54 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 O -0.35 -8.65 9.86 -39.28 -0.39 -9.04 16 13 C 0.48 10.46 6.07 36.01 0.22 10.68 16 14 O -0.52 -12.63 15.71 -18.75 -0.29 -12.92 16 15 C -0.16 -2.49 6.30 -91.74 -0.58 -3.07 16 16 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 17 C -0.15 -1.88 7.98 -26.69 -0.21 -2.09 16 18 C -0.09 -1.23 5.34 -90.62 -0.48 -1.71 16 19 H 0.11 1.25 8.14 -51.93 -0.42 0.83 16 20 C -0.13 -1.94 5.44 -90.58 -0.49 -2.43 16 21 H 0.11 2.12 7.10 -51.93 -0.37 1.75 16 22 C -0.17 -2.09 9.90 -26.69 -0.26 -2.35 16 23 C -0.15 -1.94 6.38 -90.62 -0.58 -2.51 16 24 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 25 C -0.12 -1.29 8.90 37.15 0.33 -0.96 16 26 H 0.10 2.74 6.07 -51.93 -0.32 2.43 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.11 1.58 6.65 -51.92 -0.35 1.23 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 0.98 8.05 -51.93 -0.42 0.56 16 34 H 0.05 0.52 7.90 -51.93 -0.41 0.11 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.72 5.62 -51.93 -0.29 0.43 16 LS Contribution 299.95 15.07 4.52 4.52 Total: -1.00 -30.88 299.95 -8.19 -39.07 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -5.45 Total: 2.85 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -2.19 Total: -15.78 kcal Atomic # 7 Polarization: -25.59 SS G_CDS: 0.63 Total: -24.96 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.68 Total: -21.96 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.88 -8.19 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.881 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds