Wall clock time and date at job start Sun Mar 29 2020 22:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46904 * 2 1 4 4 C 1.50702 * 109.47193 * 240.00382 * 2 1 3 5 5 H 1.08000 * 119.99417 * 239.99459 * 4 2 1 6 6 C 1.37872 * 120.00258 * 60.00047 * 4 2 1 7 7 N 1.31520 * 119.99975 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00103 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47180 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47237 * 119.99707 * 8 6 4 11 11 H 1.48503 * 109.47440 * 239.99576 * 8 6 4 12 12 O 1.45199 * 109.47276 * 120.00292 * 2 1 3 13 13 C 1.34237 * 116.99632 * 269.99976 * 12 2 1 14 14 O 1.20822 * 120.00236 * 0.02562 * 13 12 2 15 15 C 1.50701 * 119.99635 * 180.02562 * 13 12 2 16 16 H 1.09007 * 115.56114 * 303.90102 * 15 13 12 17 17 C 1.53071 * 117.51431 * 158.20482 * 15 13 12 18 18 C 1.52991 * 117.49973 * 89.59301 * 15 13 12 19 19 H 1.09000 * 117.50203 * 215.00114 * 18 15 13 20 20 C 1.53001 * 117.50132 * 0.02562 * 18 15 13 21 21 H 1.09000 * 115.54643 * 339.46541 * 20 18 15 22 22 C 1.53071 * 117.51453 * 193.74581 * 20 18 15 23 23 C 1.52998 * 117.50027 * 125.13316 * 20 18 15 24 24 H 1.09004 * 117.49422 * 215.00047 * 23 20 18 25 25 C 1.52991 * 117.50048 * 0.02562 * 23 20 18 26 26 H 1.09000 * 109.47226 * 59.99823 * 1 2 3 27 27 H 1.08998 * 109.46675 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47433 * 299.99848 * 1 2 3 29 29 H 0.96994 * 119.99729 * 180.02562 * 7 6 4 30 30 H 1.08992 * 117.49943 * 145.03012 * 17 15 13 31 31 H 1.09009 * 117.52996 * 359.97438 * 17 15 13 32 32 H 1.09003 * 117.51554 * 145.04463 * 22 20 18 33 33 H 1.08994 * 117.49328 * 0.02562 * 22 20 18 34 34 H 1.08999 * 109.47451 * 59.90849 * 25 23 20 35 35 H 1.09004 * 109.47258 * 179.91260 * 25 23 20 36 36 H 1.09003 * 109.47275 * 299.90939 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8298 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 3.1465 -2.2868 -3.6038 10 1 1.1662 -1.5865 -4.8161 11 1 3.1466 -0.1872 -4.8165 12 8 2.0140 -0.6845 1.1855 13 6 2.2171 0.0640 2.2811 14 8 1.9973 1.2517 2.2506 15 6 2.7194 -0.5771 3.5491 16 1 2.1164 -1.4014 3.9302 17 6 3.4080 0.3275 4.5742 18 6 4.2342 -0.6595 3.7471 19 1 4.6280 -1.5381 4.2580 20 6 5.1233 -0.0842 2.6428 21 1 4.6509 0.0216 1.6662 22 6 6.6109 -0.4437 2.6734 23 6 6.1572 0.9694 3.0453 24 1 6.3649 1.7683 2.3334 25 6 6.2232 1.3667 4.5212 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.7082 1.1609 -3.4844 30 1 3.2578 0.0981 5.6290 31 1 3.4983 1.3864 4.3315 32 1 7.1172 -0.5744 1.7170 33 1 6.9557 -1.0904 3.4802 34 1 6.4555 0.4886 5.1238 35 1 6.9998 2.1188 4.6607 36 1 5.2615 1.7757 4.8308 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205964.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:40 Heat of formation + Delta-G solvation = -66.614300 kcal Electronic energy + Delta-G solvation = -17241.474763 eV Core-core repulsion = 14498.383620 eV Total energy + Delta-G solvation = -2743.091144 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.57730 -39.63445 -37.65858 -36.14543 -35.34850 -31.73779 -29.52311 -27.52700 -26.41898 -24.61894 -23.00629 -22.30447 -21.28368 -20.12844 -18.69836 -18.35411 -17.45762 -17.29065 -16.46836 -16.13172 -15.64278 -15.02623 -14.52097 -14.27293 -14.15671 -13.80045 -13.30481 -13.24058 -13.07577 -12.89739 -12.83642 -12.43846 -12.38285 -12.22869 -12.16817 -11.78385 -11.68224 -11.60856 -11.25450 -11.02361 -10.72893 -10.64161 -10.42819 -8.32763 -6.49984 1.26969 1.38361 1.39561 1.53491 1.97237 2.38228 2.61470 2.94646 2.98184 3.47360 3.75930 3.81500 3.96300 4.04531 4.23194 4.31312 4.44069 4.48822 4.55004 4.72646 4.78104 4.84165 4.88493 4.93102 4.99789 5.04614 5.13908 5.20679 5.22666 5.29964 5.44730 5.48593 5.58585 5.88301 6.06376 6.55994 6.97161 7.22833 8.75565 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027253 B = 0.006679 C = 0.005847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.154268 B = 4191.254971 C = 4787.234736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.002 0.998 4 C -0.547 4.547 5 H 0.065 0.935 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.984 3.016 9 H -0.263 1.263 10 H -0.268 1.268 11 H -0.275 1.275 12 O -0.362 6.362 13 C 0.477 3.523 14 O -0.557 6.557 15 C -0.183 4.183 16 H 0.162 0.838 17 C -0.125 4.125 18 C -0.074 4.074 19 H 0.154 0.846 20 C -0.163 4.163 21 H 0.056 0.944 22 C -0.148 4.148 23 C -0.151 4.151 24 H 0.084 0.916 25 C -0.117 4.117 26 H 0.081 0.919 27 H 0.047 0.953 28 H 0.022 0.978 29 H 0.272 0.728 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.175 -4.035 14.092 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.020 0.980 4 C -0.584 4.584 5 H 0.084 0.916 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.807 3.193 9 H -0.187 1.187 10 H -0.193 1.193 11 H -0.200 1.200 12 O -0.278 6.278 13 C 0.322 3.678 14 O -0.449 6.449 15 C -0.201 4.201 16 H 0.179 0.821 17 C -0.161 4.161 18 C -0.092 4.092 19 H 0.172 0.828 20 C -0.181 4.181 21 H 0.074 0.926 22 C -0.184 4.184 23 C -0.169 4.169 24 H 0.102 0.898 25 C -0.174 4.174 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.167 0.833 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.143 0.857 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.007 -3.571 13.899 16.943 hybrid contribution -0.359 0.267 -1.497 1.562 sum 8.648 -3.304 12.403 15.477 Atomic orbital electron populations 1.21981 0.96737 1.00455 1.00781 1.20322 0.92053 0.91825 0.79412 0.98050 1.21300 1.33358 1.13802 0.89957 0.91646 1.25866 0.94676 0.95669 1.02211 1.70030 1.36614 1.23736 1.25228 0.85120 0.78459 0.78411 0.77342 1.18722 1.19348 1.20027 1.86486 1.76036 1.43845 1.21438 1.23486 0.73154 0.85187 0.85959 1.90553 1.50407 1.18664 1.85231 1.22105 0.99225 1.06103 0.92688 0.82054 1.23347 0.98707 0.96677 0.97395 1.21944 0.87141 1.01956 0.98179 0.82821 1.21811 0.92272 1.06283 0.97779 0.92577 1.23208 0.93794 0.97704 1.03720 1.22473 1.02294 0.92536 0.99599 0.89760 1.21429 1.02277 1.02307 0.91402 0.89997 0.93402 0.95908 0.91922 0.83291 0.89467 0.89276 0.85667 0.90481 0.91516 0.91928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.66 9.33 71.98 0.67 -6.99 16 2 C 0.22 12.57 2.56 29.85 0.08 12.64 16 3 H 0.00 0.11 7.16 -2.38 -0.02 0.09 16 4 C -0.55 -32.24 8.90 25.60 0.23 -32.01 16 5 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -54.14 11.32 21.45 0.24 -53.90 16 8 Si 0.98 43.85 29.54 68.60 2.03 45.88 16 9 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 O -0.36 -18.59 9.86 -51.49 -0.51 -19.10 16 13 C 0.48 21.40 6.07 71.24 0.43 21.83 16 14 O -0.56 -28.63 15.71 21.97 0.35 -28.28 16 15 C -0.18 -5.50 6.30 -11.52 -0.07 -5.58 16 16 H 0.16 3.86 8.14 -2.38 -0.02 3.84 16 17 C -0.12 -2.87 7.98 30.62 0.24 -2.63 16 18 C -0.07 -1.81 5.34 -10.80 -0.06 -1.86 16 19 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 20 C -0.16 -4.93 5.44 -10.77 -0.06 -4.99 16 21 H 0.06 2.32 7.10 -2.39 -0.02 2.30 16 22 C -0.15 -3.38 9.90 30.62 0.30 -3.07 16 23 C -0.15 -3.81 6.38 -10.80 -0.07 -3.88 16 24 H 0.08 2.36 8.14 -2.38 -0.02 2.34 16 25 C -0.12 -2.17 8.90 71.98 0.64 -1.53 16 26 H 0.08 4.70 6.07 -2.39 -0.01 4.68 16 27 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 28 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.09 2.44 6.65 -2.38 -0.02 2.43 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.13 2.09 8.05 -2.39 -0.02 2.07 16 34 H 0.08 1.11 7.90 -2.39 -0.02 1.09 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 1.22 5.62 -2.39 -0.01 1.20 16 Total: -1.00 -71.44 299.95 5.95 -65.49 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.06 Total: 16.66 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 2.79 Total: -26.74 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.24 Total: -53.90 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: -0.16 Total: -47.38 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -71.44 5.95 -65.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205964.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.126 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds