Wall clock time and date at job start Sun Mar 29 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99963 * 0.02562 * 11 10 9 13 13 O 1.34225 * 119.99990 * 180.02562 * 11 10 9 14 14 C 1.45197 * 117.00038 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47517 * 150.00076 * 14 13 11 16 16 C 1.53002 * 117.49684 * 8.74558 * 15 14 13 17 17 C 1.53004 * 117.49887 * 300.08577 * 15 14 13 18 18 C 1.52997 * 109.47025 * 270.00107 * 14 13 11 19 19 C 1.53003 * 117.50102 * 128.74880 * 18 14 13 20 20 C 1.53002 * 117.49831 * 60.08628 * 18 14 13 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.09000 * 109.47331 * 30.00026 * 14 13 11 27 27 H 1.08996 * 115.55500 * 154.41832 * 15 14 13 28 28 H 1.08998 * 117.49664 * 359.97438 * 16 15 14 29 29 H 1.08995 * 117.49894 * 145.02225 * 16 15 14 30 30 H 1.08992 * 117.50220 * 214.97630 * 17 15 14 31 31 H 1.09002 * 117.49611 * 359.97417 * 17 15 14 32 32 H 1.09006 * 115.55110 * 274.41445 * 18 14 13 33 33 H 1.09001 * 117.49629 * 359.97438 * 19 18 14 34 34 H 1.09002 * 117.50106 * 145.02138 * 19 18 14 35 35 H 1.09003 * 117.49593 * 214.98036 * 20 18 14 36 36 H 1.08992 * 117.49947 * 359.97272 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2837 -4.9672 -0.0020 13 8 2.1631 -6.1296 -0.0008 14 6 1.3724 -7.3473 -0.0020 15 6 2.1431 -8.4552 -0.7227 16 6 3.5991 -8.1732 -1.0988 17 6 2.5219 -8.2158 -2.1856 18 6 1.0931 -7.7754 1.4400 19 6 -0.3595 -8.0683 1.8213 20 6 0.3247 -6.7974 2.3311 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 0.4287 -7.1673 -0.5168 27 1 1.8873 -9.4733 -0.4293 28 1 4.0077 -7.1982 -0.8333 29 1 4.3010 -9.0058 -1.0533 30 1 2.5156 -9.0763 -2.8545 31 1 2.2216 -7.2690 -2.6347 32 1 1.8684 -8.3812 1.9093 33 1 -1.1161 -7.9556 1.0448 34 1 -0.5397 -8.8664 2.5416 35 1 0.5944 -6.7599 3.3866 36 1 0.0187 -5.8488 1.8901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870490035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:29 Heat of formation + Delta-G solvation = -52.751461 kcal Electronic energy + Delta-G solvation = -16972.958321 eV Core-core repulsion = 14230.468315 eV Total energy + Delta-G solvation = -2742.490006 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36663 -37.85698 -36.36995 -35.35770 -33.57037 -31.14045 -28.21923 -25.85092 -22.61805 -22.35429 -22.23302 -21.26617 -20.22953 -19.60343 -17.47020 -16.48433 -16.26075 -15.65064 -15.09864 -15.06452 -14.47476 -13.96315 -13.71875 -12.83260 -12.37214 -12.28747 -12.09051 -11.78088 -11.49811 -11.38249 -11.18879 -10.94609 -10.74172 -10.66239 -10.53983 -10.16478 -10.11381 -10.03683 -9.90919 -9.71377 -9.48040 -9.18411 -8.37237 -6.01194 -4.06141 2.83740 3.02848 3.33035 3.37719 3.39794 3.73695 3.93368 4.42394 4.45503 4.77527 4.89856 4.98137 5.03666 5.07958 5.19599 5.25706 5.34173 5.62588 5.67746 5.72050 5.78252 5.85552 5.98465 6.07765 6.13037 6.14994 6.20154 6.25306 6.36459 6.70318 7.00973 7.66348 7.73854 7.98216 8.27733 8.44770 9.00759 9.57914 11.09770 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.005301 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.443713 B = 5281.242701 C = 5825.581482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.035 3.965 10 C -0.104 4.104 11 C 0.457 3.543 12 O -0.505 6.505 13 O -0.355 6.355 14 C 0.146 3.854 15 C -0.154 4.154 16 C -0.165 4.165 17 C -0.178 4.178 18 C -0.172 4.172 19 C -0.169 4.169 20 C -0.180 4.180 21 H 0.262 0.738 22 H 0.025 0.975 23 H 0.025 0.975 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 -17.298 0.355 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.142 4.142 11 C 0.301 3.699 12 O -0.392 6.392 13 O -0.273 6.273 14 C 0.091 3.909 15 C -0.172 4.172 16 C -0.201 4.201 17 C -0.215 4.215 18 C -0.190 4.190 19 C -0.206 4.206 20 C -0.217 4.217 21 H 0.072 0.928 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.109 0.891 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.136 0.864 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.955 -17.205 0.351 17.657 hybrid contribution 0.292 0.777 0.068 0.833 sum 4.247 -16.428 0.419 16.973 Atomic orbital electron populations 1.69977 1.06093 1.26867 1.49875 1.25009 0.94841 0.99293 0.95103 0.86612 0.79524 0.82929 0.78644 1.20165 1.21248 1.20165 1.21122 0.93020 0.90692 1.51898 0.92408 1.18995 0.93180 0.89257 0.98812 1.21760 1.00682 0.87876 1.03864 1.24726 0.88003 0.85928 0.71225 1.90586 1.15895 1.87554 1.45146 1.86609 1.41786 1.14657 1.84272 1.21530 0.94345 0.81516 0.93533 1.22339 0.98965 0.98363 0.97558 1.22931 0.90938 1.03871 1.02406 1.22985 1.04148 1.03295 0.91098 1.22577 0.95568 1.05045 0.95829 1.22954 0.94149 0.99864 1.03638 1.23233 1.03186 0.95842 0.99400 0.92797 0.95655 0.95633 0.89143 0.89038 0.89610 0.86379 0.87359 0.89065 0.88757 0.88696 0.87323 0.88602 0.88772 0.88885 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 9 C 0.03 0.91 4.26 -27.88 -0.12 0.80 16 10 C -0.10 -2.14 5.75 -27.88 -0.16 -2.30 16 11 C 0.46 8.95 7.18 36.00 0.26 9.21 16 12 O -0.50 -11.18 13.03 -18.75 -0.24 -11.43 16 13 O -0.36 -5.88 8.21 -39.24 -0.32 -6.20 16 14 C 0.15 2.07 2.61 -26.73 -0.07 2.00 16 15 C -0.15 -1.75 5.69 -90.62 -0.52 -2.27 16 16 C -0.16 -1.79 9.88 -26.69 -0.26 -2.06 16 17 C -0.18 -1.95 10.20 -26.69 -0.27 -2.22 16 18 C -0.17 -2.24 5.38 -90.62 -0.49 -2.72 16 19 C -0.17 -2.05 10.18 -26.69 -0.27 -2.32 16 20 C -0.18 -2.61 9.80 -26.69 -0.26 -2.87 16 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 22 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 23 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 24 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 25 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 26 H 0.09 1.36 6.91 -51.93 -0.36 1.00 16 27 H 0.12 1.12 8.11 -51.93 -0.42 0.70 16 28 H 0.11 1.34 7.04 -51.93 -0.37 0.97 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.11 1.26 8.11 -51.93 -0.42 0.84 16 33 H 0.10 1.19 8.05 -51.93 -0.42 0.78 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.11 2.03 5.37 -51.93 -0.28 1.75 16 LS Contribution 303.73 15.07 4.58 4.58 Total: -1.00 -30.87 303.73 -8.45 -39.32 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.61 Total: 1.85 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -2.57 Total: -18.27 kcal Atomic # 7 Polarization: -27.04 SS G_CDS: 0.74 Total: -26.30 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.57 Total: -17.62 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.87 -8.45 -39.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870490035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.429 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds