Wall clock time and date at job start Sun Mar 29 2020 22:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00357 * 3 2 1 5 5 H 1.48506 * 109.47297 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47261 * 120.00350 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47184 * 180.02562 * 10 9 7 12 12 O 1.20825 * 119.99963 * 0.02562 * 11 10 9 13 13 O 1.34225 * 119.99990 * 180.02562 * 11 10 9 14 14 C 1.45197 * 117.00038 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47517 * 150.00076 * 14 13 11 16 16 C 1.53002 * 117.49684 * 8.74558 * 15 14 13 17 17 C 1.53004 * 117.49887 * 300.08577 * 15 14 13 18 18 C 1.52997 * 109.47025 * 270.00107 * 14 13 11 19 19 C 1.53003 * 117.50102 * 128.74880 * 18 14 13 20 20 C 1.53002 * 117.49831 * 60.08628 * 18 14 13 21 21 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 23 23 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 24 24 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 25 25 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 26 26 H 1.09000 * 109.47331 * 30.00026 * 14 13 11 27 27 H 1.08996 * 115.55500 * 154.41832 * 15 14 13 28 28 H 1.08998 * 117.49664 * 359.97438 * 16 15 14 29 29 H 1.08995 * 117.49894 * 145.02225 * 16 15 14 30 30 H 1.08992 * 117.50220 * 214.97630 * 17 15 14 31 31 H 1.09002 * 117.49611 * 359.97417 * 17 15 14 32 32 H 1.09006 * 115.55110 * 274.41445 * 18 14 13 33 33 H 1.09001 * 117.49629 * 359.97438 * 19 18 14 34 34 H 1.09002 * 117.50106 * 145.02138 * 19 18 14 35 35 H 1.09003 * 117.49593 * 214.98036 * 20 18 14 36 36 H 1.08992 * 117.49947 * 359.97272 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4920 -4.9672 -0.0012 12 8 0.2837 -4.9672 -0.0020 13 8 2.1631 -6.1296 -0.0008 14 6 1.3724 -7.3473 -0.0020 15 6 2.1431 -8.4552 -0.7227 16 6 3.5991 -8.1732 -1.0988 17 6 2.5219 -8.2158 -2.1856 18 6 1.0931 -7.7754 1.4400 19 6 -0.3595 -8.0683 1.8213 20 6 0.3247 -6.7974 2.3311 21 1 -0.4851 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6248 -2.5571 0.8896 24 1 2.8721 -3.6042 -0.8905 25 1 2.8721 -3.6043 0.8895 26 1 0.4287 -7.1673 -0.5168 27 1 1.8873 -9.4733 -0.4293 28 1 4.0077 -7.1982 -0.8333 29 1 4.3010 -9.0058 -1.0533 30 1 2.5156 -9.0763 -2.8545 31 1 2.2216 -7.2690 -2.6347 32 1 1.8684 -8.3812 1.9093 33 1 -1.1161 -7.9556 1.0448 34 1 -0.5397 -8.8664 2.5416 35 1 0.5944 -6.7599 3.3866 36 1 0.0187 -5.8488 1.8901 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870490035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:29 Heat of formation + Delta-G solvation = -68.866111 kcal Electronic energy + Delta-G solvation = -16973.657104 eV Core-core repulsion = 14230.468315 eV Total energy + Delta-G solvation = -2743.188789 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.79360 -39.11384 -37.36926 -36.71578 -35.65226 -33.14882 -29.47460 -27.77947 -24.34667 -23.39863 -23.26516 -22.26206 -21.71062 -20.93621 -19.16020 -18.19447 -17.75090 -17.08984 -16.50619 -16.37360 -16.00302 -15.34193 -15.00059 -14.39047 -14.28718 -13.78067 -13.49692 -13.17968 -12.81735 -12.81088 -12.53743 -12.43024 -12.32400 -11.99613 -11.88973 -11.74119 -11.54769 -11.41019 -11.32226 -11.20137 -11.01895 -10.75726 -10.58004 -8.20816 -6.35025 1.25511 1.42352 1.46785 1.54284 1.66772 2.42286 2.80259 2.86821 3.12828 3.43057 3.75677 3.86233 3.92532 4.02454 4.07770 4.13866 4.21660 4.37695 4.42034 4.58534 4.67632 4.70589 4.82239 4.90413 4.92263 5.01527 5.14237 5.18620 5.22380 5.35946 5.43779 5.52384 5.53447 5.78998 6.12198 6.80088 6.88441 7.35380 8.91644 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032197 B = 0.005301 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.443713 B = 5281.242701 C = 5825.581482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.095 4.095 11 C 0.464 3.536 12 O -0.538 6.538 13 O -0.345 6.345 14 C 0.137 3.863 15 C -0.154 4.154 16 C -0.160 4.160 17 C -0.182 4.182 18 C -0.166 4.166 19 C -0.150 4.150 20 C -0.206 4.206 21 H 0.264 0.736 22 H -0.012 1.012 23 H -0.011 1.011 24 H 0.112 0.888 25 H 0.112 0.888 26 H 0.063 0.937 27 H 0.147 0.853 28 H 0.090 0.910 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.072 0.928 32 H 0.134 0.866 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.737 -18.762 0.589 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.094 0.906 9 C 0.005 3.995 10 C -0.133 4.133 11 C 0.309 3.691 12 O -0.427 6.427 13 O -0.263 6.263 14 C 0.082 3.918 15 C -0.172 4.172 16 C -0.196 4.196 17 C -0.219 4.219 18 C -0.184 4.184 19 C -0.186 4.186 20 C -0.243 4.243 21 H 0.073 0.927 22 H 0.007 0.993 23 H 0.007 0.993 24 H 0.130 0.870 25 H 0.130 0.870 26 H 0.081 0.919 27 H 0.165 0.835 28 H 0.109 0.891 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.152 0.848 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.227 -18.696 0.582 19.714 hybrid contribution -0.449 1.164 -0.016 1.248 sum 5.778 -17.532 0.566 18.468 Atomic orbital electron populations 1.70150 1.08248 1.28024 1.51122 1.26091 0.95713 1.03841 0.94407 0.85369 0.78074 0.77296 0.79496 1.18716 1.21219 1.18718 1.21609 0.94050 0.91345 1.51384 0.90573 1.18751 0.93554 0.91892 0.95294 1.21501 0.99384 0.86523 1.05857 1.24401 0.87295 0.86722 0.70636 1.90588 1.17314 1.88132 1.46715 1.86571 1.41505 1.14599 1.83580 1.21848 0.93842 0.81133 0.94946 1.22407 0.99097 0.98221 0.97486 1.22986 0.90961 1.04006 1.01684 1.23046 1.04199 1.03275 0.91346 1.22669 0.96832 1.04344 0.94530 1.23042 0.93268 0.98932 1.03400 1.23144 1.05777 0.95138 1.00250 0.92729 0.99335 0.99278 0.87019 0.86985 0.91931 0.83536 0.89132 0.86354 0.86287 0.90934 0.84845 0.89519 0.85582 0.87480 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.29 21.45 0.28 -58.41 16 2 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 3 Si 0.97 43.99 29.54 68.60 2.03 46.01 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 9 C 0.04 2.33 4.26 29.85 0.13 2.46 16 10 C -0.10 -3.97 5.75 29.85 0.17 -3.79 16 11 C 0.46 18.76 7.18 71.24 0.51 19.28 16 12 O -0.54 -25.33 13.03 21.97 0.29 -25.04 16 13 O -0.35 -11.39 8.21 -51.37 -0.42 -11.81 16 14 C 0.14 3.80 2.61 30.59 0.08 3.88 16 15 C -0.15 -3.13 5.69 -10.79 -0.06 -3.20 16 16 C -0.16 -3.05 9.88 30.62 0.30 -2.75 16 17 C -0.18 -3.64 10.20 30.62 0.31 -3.32 16 18 C -0.17 -4.04 5.38 -10.79 -0.06 -4.10 16 19 C -0.15 -3.40 10.18 30.62 0.31 -3.09 16 20 C -0.21 -5.99 9.80 30.62 0.30 -5.69 16 21 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 22 H -0.01 -0.73 8.10 -2.39 -0.02 -0.75 16 23 H -0.01 -0.69 8.10 -2.39 -0.02 -0.71 16 24 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 25 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 26 H 0.06 2.04 6.91 -2.39 -0.02 2.03 16 27 H 0.15 2.20 8.11 -2.39 -0.02 2.18 16 28 H 0.09 2.08 7.04 -2.39 -0.02 2.06 16 29 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.13 2.63 8.11 -2.38 -0.02 2.61 16 33 H 0.09 2.13 8.05 -2.39 -0.02 2.12 16 34 H 0.13 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 36 H 0.07 2.74 5.37 -2.39 -0.01 2.73 16 Total: -1.00 -69.79 303.73 5.92 -63.88 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.05 Total: 16.06 kcal Atomic # 6 Polarization: -33.38 SS G_CDS: 2.69 Total: -30.69 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.28 Total: -58.41 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -0.14 Total: -36.85 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.79 5.92 -63.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870490035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.990 kcal (2) G-P(sol) polarization free energy of solvation -69.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds