Wall clock time and date at job start Sun Mar 29 2020 22:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00053 * 2 1 4 4 H 1.48506 * 109.47126 * 270.00230 * 3 2 1 5 5 H 1.48504 * 109.46796 * 29.99727 * 3 2 1 6 6 H 1.48493 * 109.47518 * 149.99809 * 3 2 1 7 7 C 1.37878 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47049 * 180.02562 * 10 9 7 12 12 O 1.20830 * 119.99538 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00117 * 180.02562 * 11 10 9 14 14 C 1.45197 * 116.99901 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47078 * 179.97438 * 14 13 11 16 16 H 1.09002 * 115.56020 * 29.30343 * 15 14 13 17 17 C 1.52997 * 117.49537 * 243.62214 * 15 14 13 18 18 C 1.53000 * 117.49776 * 174.99760 * 15 14 13 19 19 H 1.08990 * 117.49990 * 359.97438 * 18 15 14 20 20 C 1.52998 * 117.49463 * 214.97475 * 18 15 14 21 21 C 1.53002 * 117.49563 * 128.73419 * 20 18 15 22 22 C 1.53006 * 117.49984 * 60.07748 * 20 18 15 23 23 H 0.96997 * 120.00201 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.46759 * 60.00464 * 9 7 2 25 25 H 1.08994 * 109.46763 * 300.00025 * 9 7 2 26 26 H 1.08996 * 109.46970 * 60.00139 * 10 9 7 27 27 H 1.09002 * 109.46650 * 299.99903 * 10 9 7 28 28 H 1.08997 * 109.47490 * 59.99923 * 14 13 11 29 29 H 1.09003 * 109.47030 * 299.99316 * 14 13 11 30 30 H 1.08999 * 117.49685 * 145.02116 * 17 15 14 31 31 H 1.08999 * 117.52022 * 359.97438 * 17 15 14 32 32 H 1.08994 * 115.55409 * 274.40321 * 20 18 15 33 33 H 1.09004 * 117.50008 * 0.02562 * 21 20 18 34 34 H 1.09008 * 117.49513 * 145.01790 * 21 20 18 35 35 H 1.08993 * 117.49976 * 214.97789 * 22 20 18 36 36 H 1.08996 * 117.49425 * 359.97318 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2836 -4.9671 -0.0011 13 8 2.1631 -6.1296 -0.0008 14 6 1.3723 -7.3474 -0.0020 15 6 2.3044 -8.5608 -0.0020 16 1 3.2705 -8.4116 0.4801 17 6 2.2574 -9.4876 -1.2183 18 6 1.6624 -9.9446 0.1152 19 1 0.5762 -9.9906 0.1926 20 6 2.4259 -11.0133 0.9000 21 6 1.6662 -11.7614 1.9974 22 6 2.7301 -10.7265 2.3719 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.7445 -7.3720 -0.8926 29 1 0.7426 -7.3725 0.8874 30 1 3.1926 -9.9483 -1.5364 31 1 1.5623 -9.2335 -2.0186 32 1 3.1695 -11.5722 0.3321 33 1 0.6224 -11.4925 2.1599 34 1 1.9104 -12.8125 2.1515 35 1 3.6737 -11.0970 2.7722 36 1 2.3867 -9.7763 2.7808 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870669718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:46 Heat of formation + Delta-G solvation = -58.696511 kcal Electronic energy + Delta-G solvation = -15997.394243 eV Core-core repulsion = 13254.646440 eV Total energy + Delta-G solvation = -2742.747802 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98918 -38.83739 -36.32953 -35.22655 -33.56954 -31.15804 -28.08825 -25.73841 -23.86628 -22.69908 -22.23232 -21.04777 -20.21449 -19.57338 -17.30319 -16.50851 -16.15558 -15.88403 -15.70451 -14.87084 -14.44887 -14.12578 -13.87577 -13.21428 -12.54890 -12.30817 -12.22747 -11.92285 -11.69761 -11.38854 -11.18966 -11.13437 -11.03835 -10.94895 -10.63711 -10.48616 -10.10734 -10.03852 -9.89672 -9.72118 -9.48119 -9.16684 -8.37177 -6.00915 -4.05783 2.85150 2.95078 3.32125 3.37938 3.40440 3.44233 3.70149 4.29545 4.44705 4.51115 4.60825 4.78256 4.82777 5.01218 5.16777 5.18557 5.34472 5.37918 5.39030 5.51910 5.57710 5.63111 5.66235 5.84938 5.88391 5.94630 6.09182 6.14168 6.22842 6.68172 6.97110 7.67329 7.74497 7.98848 8.27257 8.43603 9.01418 9.58226 11.10150 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059756 B = 0.003389 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.458021 B = 8259.755995 C = 8303.069701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.508 6.508 13 O -0.364 6.364 14 C 0.095 3.905 15 C -0.144 4.144 16 H 0.118 0.882 17 C -0.167 4.167 18 C -0.115 4.115 19 H 0.108 0.892 20 C -0.125 4.125 21 C -0.177 4.177 22 C -0.177 4.177 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 -21.464 1.184 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.004 4.004 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.394 6.394 13 O -0.282 6.282 14 C 0.021 3.979 15 C -0.162 4.162 16 H 0.136 0.864 17 C -0.204 4.204 18 C -0.133 4.133 19 H 0.126 0.874 20 C -0.143 4.143 21 C -0.214 4.214 22 C -0.214 4.214 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.044 0.956 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.113 -21.374 1.189 22.009 hybrid contribution 0.248 0.813 -0.016 0.850 sum 5.361 -20.561 1.173 21.281 Atomic orbital electron populations 1.69991 1.06103 1.26755 1.49971 1.25026 0.94859 0.99345 0.95133 0.86538 0.79764 0.83218 0.78127 1.20603 1.21192 1.19780 1.21164 0.93081 0.90653 1.51750 0.92295 1.19018 0.93243 0.89303 0.98881 1.21760 1.00658 0.87660 1.03997 1.24773 0.87924 0.85703 0.71596 1.90632 1.15945 1.87743 1.45099 1.86545 1.42036 1.14856 1.84749 1.22406 0.92291 0.81018 1.02231 1.22256 1.01563 0.89129 1.03298 0.86394 1.23221 1.02942 1.02919 0.91271 1.21872 0.98735 0.93367 0.99363 0.87421 1.21744 1.02104 0.99968 0.90499 1.23003 0.97768 0.97449 1.03221 1.23003 1.00190 1.00852 0.97310 0.92849 0.95599 0.95600 0.88957 0.88958 0.91412 0.91214 0.88368 0.88414 0.87579 0.88692 0.88847 0.88809 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.19 13.29 55.43 0.74 -26.45 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 10 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 11 C 0.46 9.23 7.96 36.00 0.29 9.52 16 12 O -0.51 -11.83 15.73 -18.75 -0.29 -12.12 16 13 O -0.36 -6.20 10.22 -39.25 -0.40 -6.61 16 14 C 0.09 1.33 5.75 37.16 0.21 1.54 16 15 C -0.14 -1.58 5.71 -90.62 -0.52 -2.10 16 16 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.17 -1.53 9.90 -26.73 -0.26 -1.80 16 18 C -0.12 -1.05 5.59 -90.62 -0.51 -1.56 16 19 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 20 C -0.13 -1.01 5.87 -90.62 -0.53 -1.55 16 21 C -0.18 -1.32 10.25 -26.69 -0.27 -1.59 16 22 C -0.18 -1.42 10.18 -26.69 -0.27 -1.69 16 23 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 24 H 0.03 0.75 8.10 -51.93 -0.42 0.32 16 25 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 27 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 28 H 0.07 0.95 7.87 -51.93 -0.41 0.54 16 29 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16 30 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 32 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 0.59 8.14 -51.92 -0.42 0.16 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 313.58 15.07 4.73 4.73 Total: -1.00 -31.79 313.58 -8.67 -40.45 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -5.86 Total: -2.13 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -2.56 Total: -14.39 kcal Atomic # 7 Polarization: -27.19 SS G_CDS: 0.74 Total: -26.45 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.70 Total: -18.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.79 -8.67 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870669718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.242 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds