Wall clock time and date at job start Sun Mar 29 2020 22:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00053 * 2 1 4 4 H 1.48506 * 109.47126 * 270.00230 * 3 2 1 5 5 H 1.48504 * 109.46796 * 29.99727 * 3 2 1 6 6 H 1.48493 * 109.47518 * 149.99809 * 3 2 1 7 7 C 1.37878 * 120.00148 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99896 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.46975 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47049 * 180.02562 * 10 9 7 12 12 O 1.20830 * 119.99538 * 359.97438 * 11 10 9 13 13 O 1.34228 * 120.00117 * 180.02562 * 11 10 9 14 14 C 1.45197 * 116.99901 * 180.02562 * 13 11 10 15 15 C 1.53006 * 109.47078 * 179.97438 * 14 13 11 16 16 H 1.09002 * 115.56020 * 29.30343 * 15 14 13 17 17 C 1.52997 * 117.49537 * 243.62214 * 15 14 13 18 18 C 1.53000 * 117.49776 * 174.99760 * 15 14 13 19 19 H 1.08990 * 117.49990 * 359.97438 * 18 15 14 20 20 C 1.52998 * 117.49463 * 214.97475 * 18 15 14 21 21 C 1.53002 * 117.49563 * 128.73419 * 20 18 15 22 22 C 1.53006 * 117.49984 * 60.07748 * 20 18 15 23 23 H 0.96997 * 120.00201 * 0.02562 * 1 2 3 24 24 H 1.08991 * 109.46759 * 60.00464 * 9 7 2 25 25 H 1.08994 * 109.46763 * 300.00025 * 9 7 2 26 26 H 1.08996 * 109.46970 * 60.00139 * 10 9 7 27 27 H 1.09002 * 109.46650 * 299.99903 * 10 9 7 28 28 H 1.08997 * 109.47490 * 59.99923 * 14 13 11 29 29 H 1.09003 * 109.47030 * 299.99316 * 14 13 11 30 30 H 1.08999 * 117.49685 * 145.02116 * 17 15 14 31 31 H 1.08999 * 117.52022 * 359.97438 * 17 15 14 32 32 H 1.08994 * 115.55409 * 274.40321 * 20 18 15 33 33 H 1.09004 * 117.50008 * 0.02562 * 21 20 18 34 34 H 1.09008 * 117.49513 * 145.01790 * 21 20 18 35 35 H 1.08993 * 117.49976 * 214.97789 * 22 20 18 36 36 H 1.08996 * 117.49425 * 359.97318 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4919 -4.9672 -0.0012 12 8 0.2836 -4.9671 -0.0011 13 8 2.1631 -6.1296 -0.0008 14 6 1.3723 -7.3474 -0.0020 15 6 2.3044 -8.5608 -0.0020 16 1 3.2705 -8.4116 0.4801 17 6 2.2574 -9.4876 -1.2183 18 6 1.6624 -9.9446 0.1152 19 1 0.5762 -9.9906 0.1926 20 6 2.4259 -11.0133 0.9000 21 6 1.6662 -11.7614 1.9974 22 6 2.7301 -10.7265 2.3719 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8903 25 1 0.6248 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8906 28 1 0.7445 -7.3720 -0.8926 29 1 0.7426 -7.3725 0.8874 30 1 3.1926 -9.9483 -1.5364 31 1 1.5623 -9.2335 -2.0186 32 1 3.1695 -11.5722 0.3321 33 1 0.6224 -11.4925 2.1599 34 1 1.9104 -12.8125 2.1515 35 1 3.6737 -11.0970 2.7722 36 1 2.3867 -9.7763 2.7808 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870669718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:45 Heat of formation + Delta-G solvation = -75.109435 kcal Electronic energy + Delta-G solvation = -15998.105960 eV Core-core repulsion = 13254.646440 eV Total energy + Delta-G solvation = -2743.459520 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.51402 -39.66368 -37.67835 -36.12321 -35.65478 -33.16525 -29.39617 -27.61454 -24.61638 -24.09860 -23.28781 -21.95585 -21.57669 -20.66385 -19.06319 -18.18762 -17.68851 -17.20868 -16.58260 -16.45525 -15.89567 -15.40148 -14.97070 -14.36968 -14.24538 -14.10167 -13.61785 -13.21238 -12.83397 -12.60772 -12.50648 -12.35339 -12.20602 -12.13140 -12.00089 -11.90519 -11.75534 -11.45707 -11.43044 -11.27784 -10.78751 -10.58174 -10.45455 -8.20297 -6.34276 1.21818 1.43224 1.45949 1.56607 1.64402 2.42800 2.61060 3.01738 3.13480 3.51748 3.68770 3.81868 4.04749 4.08246 4.12846 4.17454 4.27285 4.41442 4.43641 4.49906 4.52243 4.56262 4.81739 4.88319 4.91126 5.04155 5.15996 5.20811 5.28116 5.32834 5.40993 5.47615 5.54417 5.80145 6.12711 6.77967 6.85757 7.36067 8.92469 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.059756 B = 0.003389 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 468.458021 B = 8259.755995 C = 8303.069701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.975 3.025 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.038 3.962 10 C -0.094 4.094 11 C 0.465 3.535 12 O -0.546 6.546 13 O -0.354 6.354 14 C 0.090 3.910 15 C -0.157 4.157 16 H 0.119 0.881 17 C -0.157 4.157 18 C -0.106 4.106 19 H 0.107 0.893 20 C -0.129 4.129 21 C -0.174 4.174 22 C -0.183 4.183 23 H 0.264 0.736 24 H -0.010 1.010 25 H -0.011 1.011 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.844 -22.307 1.051 23.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.001 3.999 10 C -0.131 4.131 11 C 0.310 3.690 12 O -0.437 6.437 13 O -0.271 6.271 14 C 0.017 3.983 15 C -0.175 4.175 16 H 0.137 0.863 17 C -0.194 4.194 18 C -0.124 4.124 19 H 0.125 0.875 20 C -0.147 4.147 21 C -0.210 4.210 22 C -0.220 4.220 23 H 0.073 0.927 24 H 0.008 0.992 25 H 0.008 0.992 26 H 0.134 0.866 27 H 0.135 0.865 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.136 0.864 33 H 0.111 0.889 34 H 0.126 0.874 35 H 0.123 0.877 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.337 -22.250 1.056 23.453 hybrid contribution -0.469 0.971 0.031 1.079 sum 6.868 -21.280 1.088 22.387 Atomic orbital electron populations 1.70159 1.08261 1.27962 1.51233 1.26117 0.95746 1.03924 0.94487 0.85295 0.78658 0.77594 0.78552 1.19678 1.21154 1.17927 1.21650 0.94136 0.91263 1.51168 0.90388 1.18803 0.93696 0.92004 0.95435 1.21524 0.99338 0.85979 1.06296 1.24546 0.87153 0.86596 0.70707 1.90625 1.17569 1.88382 1.47076 1.86511 1.41820 1.14876 1.83896 1.22679 0.93002 0.80645 1.01987 1.22152 1.01188 0.88551 1.05627 0.86338 1.23329 1.03692 1.01460 0.90917 1.21932 0.98863 0.92156 0.99413 0.87487 1.21803 1.02504 0.99879 0.90521 1.23086 0.97517 0.98099 1.02343 1.23032 1.00987 1.00682 0.97315 0.92733 0.99199 0.99216 0.86572 0.86537 0.91582 0.91715 0.86730 0.88257 0.86358 0.88933 0.87401 0.87747 0.89649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.62 13.29 21.45 0.28 -58.33 16 2 C 0.00 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.98 43.88 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 8 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 9 C 0.04 2.08 4.26 29.85 0.13 2.21 16 10 C -0.09 -3.86 5.75 29.85 0.17 -3.69 16 11 C 0.46 18.87 7.96 71.24 0.57 19.44 16 12 O -0.55 -26.29 15.73 21.95 0.35 -25.95 16 13 O -0.35 -11.81 10.22 -51.40 -0.53 -12.34 16 14 C 0.09 2.51 5.75 71.98 0.41 2.92 16 15 C -0.16 -3.24 5.71 -10.79 -0.06 -3.30 16 16 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 17 C -0.16 -2.57 9.90 30.60 0.30 -2.27 16 18 C -0.11 -1.76 5.59 -10.79 -0.06 -1.82 16 19 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.13 -1.82 5.87 -10.79 -0.06 -1.89 16 21 C -0.17 -2.25 10.25 30.62 0.31 -1.94 16 22 C -0.18 -2.66 10.18 30.62 0.31 -2.34 16 23 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 24 H -0.01 -0.64 8.10 -2.39 -0.02 -0.66 16 25 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 26 H 0.12 4.23 8.14 -2.39 -0.02 4.21 16 27 H 0.12 4.23 8.14 -2.39 -0.02 4.22 16 28 H 0.07 1.85 7.87 -2.39 -0.02 1.83 16 29 H 0.06 1.85 8.13 -2.39 -0.02 1.83 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.10 1.61 8.03 -2.39 -0.02 1.59 16 32 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -69.51 313.58 5.89 -63.62 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.04 Total: 10.01 kcal Atomic # 6 Polarization: -25.63 SS G_CDS: 2.72 Total: -22.92 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.28 Total: -58.33 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.18 Total: -38.28 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.51 5.89 -63.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870669718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.489 kcal (2) G-P(sol) polarization free energy of solvation -69.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds