Wall clock time and date at job start Sun Mar 29 2020 22:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00013 * 2 1 4 4 H 1.48494 * 109.47035 * 239.99956 * 3 2 1 5 5 H 1.48502 * 109.46922 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46979 * 119.99362 * 3 2 1 7 7 C 1.37878 * 120.00149 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00445 * 175.15139 * 7 2 1 9 9 C 1.50709 * 119.99754 * 355.42824 * 7 2 1 10 10 C 1.53003 * 115.54995 * 274.92276 * 9 7 2 11 11 O 1.42905 * 109.46928 * 295.66454 * 10 9 7 12 12 N 1.41594 * 113.99626 * 184.97276 * 11 10 9 13 13 C 1.37002 * 120.00235 * 185.01074 * 12 11 10 14 14 N 1.29328 * 119.99701 * 5.05844 * 13 12 11 15 15 C 1.50699 * 120.00667 * 185.05181 * 13 12 11 16 16 C 1.53783 * 113.61555 * 254.14097 * 15 13 12 17 17 C 1.53954 * 87.01811 * 220.04512 * 16 15 13 18 18 C 1.53777 * 113.61732 * 156.53047 * 15 13 12 19 19 C 1.53005 * 117.49709 * 129.25405 * 9 7 2 20 20 C 1.52995 * 117.49980 * 60.59651 * 9 7 2 21 21 H 0.96998 * 120.00106 * 5.00809 * 1 2 3 22 22 H 1.09002 * 109.46817 * 55.66181 * 10 9 7 23 23 H 1.08992 * 109.46766 * 175.66487 * 10 9 7 24 24 H 0.97006 * 120.00361 * 5.01985 * 12 11 10 25 25 H 0.96998 * 120.00470 * 179.97438 * 14 13 12 26 26 H 1.08998 * 112.84428 * 25.33477 * 15 13 12 27 27 H 1.09002 * 113.61362 * 334.56854 * 16 15 13 28 28 H 1.09004 * 113.61460 * 105.46765 * 16 15 13 29 29 H 1.09006 * 113.53362 * 270.80976 * 17 16 15 30 30 H 1.09001 * 113.66528 * 139.93157 * 17 16 15 31 31 H 1.08991 * 113.61350 * 254.53291 * 18 15 13 32 32 H 1.09008 * 113.61139 * 25.35132 * 18 15 13 33 33 H 1.08997 * 117.49789 * 0.02562 * 19 9 7 34 34 H 1.09002 * 117.49506 * 145.01934 * 19 9 7 35 35 H 1.08998 * 117.49993 * 214.98352 * 20 9 7 36 36 H 1.09000 * 117.49785 * 359.97311 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0816 -1.1958 -0.0785 9 6 1.2546 -2.4971 0.1052 10 6 0.9187 -2.9529 1.5266 11 8 2.1282 -3.2204 2.2392 12 7 1.9269 -3.7567 3.5342 13 6 2.9972 -3.9632 4.3641 14 7 4.1783 -3.5787 4.0040 15 6 2.7983 -4.6384 5.6966 16 6 2.8776 -3.6755 6.8930 17 6 3.6515 -4.7834 7.6305 18 6 4.0709 -5.3045 6.2458 19 6 1.5731 -3.5803 -0.9274 20 6 0.2454 -2.8218 -0.9979 21 1 -0.4850 0.8368 -0.0733 22 1 0.3619 -2.1676 2.0378 23 1 0.3140 -3.8586 1.4842 24 1 1.0311 -3.9779 3.8337 25 1 4.9360 -3.7245 4.5916 26 1 1.9228 -5.2873 5.7157 27 1 3.4727 -2.7835 6.6970 28 1 1.9079 -3.4495 7.3367 29 1 3.0088 -5.4716 8.1797 30 1 4.4841 -4.4121 8.2279 31 1 4.0632 -6.3915 6.1676 32 1 4.9929 -4.8596 5.8713 33 1 2.3253 -3.3507 -1.6821 34 1 1.5429 -4.6177 -0.5941 35 1 -0.6578 -3.3604 -0.7111 36 1 0.1235 -2.0929 -1.7990 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871765917.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:23 Heat of formation + Delta-G solvation = 56.952656 kcal Electronic energy + Delta-G solvation = -16811.193423 eV Core-core repulsion = 14105.753296 eV Total energy + Delta-G solvation = -2705.440127 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46482 -39.09486 -37.52412 -35.26805 -34.00331 -31.61330 -28.17830 -27.22116 -26.55046 -26.42564 -22.93162 -22.14282 -21.15111 -20.06589 -18.87645 -18.06270 -17.31793 -16.75943 -16.52611 -16.16453 -16.01029 -15.39230 -14.78370 -14.10529 -13.92832 -13.78141 -13.51522 -13.40599 -12.94111 -12.86943 -12.67675 -12.39627 -12.06020 -11.94635 -11.53849 -11.45755 -11.35615 -11.12835 -10.80512 -10.46240 -10.07527 -9.93590 -8.95558 -8.13285 -6.23909 1.23881 1.37229 1.40321 1.47535 1.76966 2.40784 3.14088 3.36788 3.55294 3.69387 3.73556 3.82803 3.93893 4.17651 4.23509 4.42976 4.46563 4.64749 4.71303 4.72191 4.78162 4.84020 4.98054 5.02244 5.09354 5.14986 5.21679 5.26471 5.50182 5.54362 5.65763 5.74907 6.37141 6.45194 6.76029 6.78949 7.43192 7.85364 8.93535 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.027513 B = 0.005746 C = 0.005155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.454635 B = 4872.016643 C = 5430.104788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.030 3.970 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.504 4.504 8 H 0.038 0.962 9 C 0.007 3.993 10 C 0.095 3.905 11 O -0.155 6.155 12 N -0.594 5.594 13 C 0.430 3.570 14 N -0.807 5.807 15 C -0.111 4.111 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.132 4.132 19 C -0.187 4.187 20 C -0.131 4.131 21 H 0.262 0.738 22 H 0.033 0.967 23 H 0.055 0.945 24 H 0.420 0.580 25 H 0.345 0.655 26 H 0.131 0.869 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.139 -10.987 14.404 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.170 4.170 3 Si 0.771 3.229 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.542 4.542 8 H 0.056 0.944 9 C 0.005 3.995 10 C 0.017 3.983 11 O -0.159 6.159 12 N -0.282 5.282 13 C 0.147 3.853 14 N -0.444 5.444 15 C -0.134 4.134 16 C -0.169 4.169 17 C -0.160 4.160 18 C -0.170 4.170 19 C -0.224 4.224 20 C -0.169 4.169 21 H 0.071 0.929 22 H 0.051 0.949 23 H 0.073 0.927 24 H 0.263 0.737 25 H 0.164 0.836 26 H 0.149 0.851 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.587 -10.293 13.402 16.973 hybrid contribution -0.063 0.811 0.460 0.935 sum 1.523 -9.482 13.862 16.864 Atomic orbital electron populations 1.70039 1.06547 1.27470 1.50143 1.25556 0.95699 1.01490 0.94296 0.85818 0.78689 0.79867 0.78495 1.19618 1.20050 1.20899 1.20545 0.92166 0.90528 1.50934 0.94385 1.18796 1.00872 0.93782 0.86045 1.22371 0.86161 0.96905 0.92868 1.90698 1.27038 1.83742 1.14385 1.45754 1.07930 1.68655 1.05902 1.21624 0.87472 0.89064 0.87125 1.69032 1.01332 1.32665 1.41329 1.22705 1.02856 0.99479 0.88392 1.22987 1.02271 0.96936 0.94661 1.22805 1.00468 0.97378 0.95348 1.23075 0.95474 1.01650 0.96839 1.22989 0.99317 0.96292 1.03850 1.22424 0.91822 1.01086 1.01558 0.92868 0.94921 0.92677 0.73728 0.83570 0.85118 0.91662 0.89291 0.87618 0.90263 0.89214 0.90697 0.90775 0.89086 0.89664 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.00 12.65 21.45 0.27 -51.73 16 2 C 0.03 1.71 5.43 84.65 0.46 2.17 16 3 Si 0.95 45.94 29.54 68.60 2.03 47.97 16 4 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 7 C -0.50 -29.58 8.75 25.60 0.22 -29.35 16 8 H 0.04 2.34 7.82 -2.91 -0.02 2.32 16 9 C 0.01 0.35 1.69 -52.92 -0.09 0.26 16 10 C 0.09 4.37 6.05 71.98 0.44 4.81 16 11 O -0.16 -7.37 11.03 -38.77 -0.43 -7.80 16 12 N -0.59 -21.00 6.48 -50.05 -0.32 -21.33 16 13 C 0.43 13.78 7.39 137.83 1.02 14.80 16 14 N -0.81 -30.86 13.54 -49.84 -0.67 -31.54 16 15 C -0.11 -2.18 4.16 -11.01 -0.05 -2.23 16 16 C -0.13 -2.24 7.64 31.18 0.24 -2.00 16 17 C -0.12 -1.51 8.09 31.18 0.25 -1.26 16 18 C -0.13 -2.14 7.48 31.12 0.23 -1.91 16 19 C -0.19 -8.43 9.96 30.62 0.30 -8.12 16 20 C -0.13 -6.14 9.14 30.62 0.28 -5.86 16 21 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 22 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 24 H 0.42 11.47 8.58 -92.70 -0.80 10.67 16 25 H 0.35 11.10 6.49 -92.71 -0.60 10.50 16 26 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 28 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.07 1.42 6.04 -2.38 -0.01 1.40 16 33 H 0.07 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 35 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 36 H 0.07 3.44 8.14 -2.39 -0.02 3.42 16 Total: -1.00 -70.86 305.20 3.87 -67.00 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.32 Total: 26.11 kcal Atomic # 6 Polarization: -32.00 SS G_CDS: 3.31 Total: -28.68 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -0.73 Total: -104.59 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.43 Total: -7.80 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -70.86 3.87 -67.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871765917.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.951 kcal (2) G-P(sol) polarization free energy of solvation -70.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds