Wall clock time and date at job start Sun Mar 29 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21591 * 119.99538 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00462 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00326 * 179.97438 * 14 12 11 16 16 H 1.09000 * 115.56232 * 350.73775 * 15 14 12 17 17 C 1.53130 * 117.51444 * 136.53763 * 15 14 12 18 18 C 1.52463 * 59.85538 * 107.44607 * 17 15 14 19 19 C 1.53261 * 128.58144 * 117.60112 * 18 17 15 20 20 C 1.53883 * 86.88402 * 114.94081 * 19 18 17 21 21 C 1.53252 * 128.58595 * 242.39170 * 18 17 15 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 28 28 H 0.97004 * 119.99310 * 359.97438 * 14 12 11 29 29 H 1.09002 * 117.51206 * 214.90064 * 17 15 14 30 30 H 1.09001 * 117.50945 * 359.97438 * 17 15 14 31 31 H 1.08994 * 113.65011 * 229.44454 * 19 18 17 32 32 H 1.09005 * 113.64280 * 0.44475 * 19 18 17 33 33 H 1.09000 * 113.59377 * 270.39664 * 20 19 18 34 34 H 1.08998 * 113.58970 * 139.57013 * 20 19 18 35 35 H 1.08997 * 113.64397 * 359.56343 * 21 18 17 36 36 H 1.08999 * 113.64188 * 130.47247 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.1602 -3.8040 -0.0008 13 8 5.5522 -4.8570 -0.0018 14 7 7.5080 -3.8042 -0.0003 15 6 8.2404 -5.0729 -0.0004 16 1 7.6349 -5.9654 0.1574 17 6 9.4481 -5.1924 -0.9342 18 6 9.6536 -5.0703 0.5715 19 6 10.2976 -6.0753 1.5329 20 6 11.4008 -5.0262 1.7572 21 6 10.3670 -3.9609 1.3519 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 3.6577 -3.1507 0.8897 26 1 3.6584 -3.1504 -0.8902 27 1 5.9714 -1.7967 0.0003 28 1 7.9930 -2.9641 0.0001 29 1 9.6370 -6.1638 -1.3911 30 1 9.6971 -4.3271 -1.5486 31 1 9.6984 -6.2764 2.4209 32 1 10.6506 -6.9833 1.0441 33 1 12.2338 -5.1132 1.0596 34 1 11.7238 -4.9480 2.7953 35 1 10.7756 -3.1739 0.7181 36 1 9.7864 -3.5724 2.1887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872965947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:40 Heat of formation + Delta-G solvation = 8.176500 kcal Electronic energy + Delta-G solvation = -16283.253275 eV Core-core repulsion = 13575.698055 eV Total energy + Delta-G solvation = -2707.555220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.19383 -39.01235 -35.28598 -34.59104 -32.86046 -31.84395 -29.75643 -25.98595 -24.91797 -23.30266 -22.18092 -20.76108 -20.60530 -18.73508 -17.98184 -16.90364 -16.32690 -15.51742 -15.19074 -15.15546 -14.52637 -14.12653 -13.65920 -13.51637 -12.90568 -12.64212 -12.58852 -12.48636 -11.81808 -11.66566 -11.47284 -11.23855 -10.80953 -10.56823 -10.36727 -10.26521 -10.07225 -9.96841 -9.75805 -9.31475 -8.78835 -8.61059 -8.31025 -6.10044 -4.09963 2.85291 3.25735 3.30516 3.33259 3.34613 3.75271 4.24098 4.37897 4.38494 4.50282 4.53882 4.64411 4.69697 5.10867 5.22911 5.42189 5.45273 5.48707 5.55029 5.61216 5.72795 5.78963 6.03600 6.09593 6.10752 6.26023 6.57222 6.62019 6.82073 7.05455 7.25748 7.30766 7.68488 8.29347 8.46931 8.90044 8.95160 9.50087 11.03085 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047111 B = 0.003948 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.204547 B = 7090.506157 C = 7425.069553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.522 4.522 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.148 3.852 11 N -0.741 5.741 12 C 0.702 3.298 13 O -0.593 6.593 14 N -0.721 5.721 15 C 0.124 3.876 16 H 0.137 0.863 17 C -0.165 4.165 18 C -0.175 4.175 19 C -0.097 4.097 20 C -0.136 4.136 21 C -0.100 4.100 22 H 0.265 0.735 23 H 0.017 0.983 24 H 0.021 0.979 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.391 0.609 28 H 0.394 0.606 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.744 -6.781 1.427 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.395 5.395 12 C 0.402 3.598 13 O -0.471 6.471 14 N -0.374 5.374 15 C 0.017 3.983 16 H 0.155 0.845 17 C -0.204 4.204 18 C -0.176 4.176 19 C -0.135 4.135 20 C -0.173 4.173 21 C -0.138 4.138 22 H 0.074 0.926 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.224 0.776 28 H 0.228 0.772 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.924 -7.622 1.433 24.201 hybrid contribution 0.834 1.791 -0.106 1.979 sum 23.758 -5.831 1.328 24.499 Atomic orbital electron populations 1.69906 1.06289 1.27031 1.50490 1.25001 0.94765 0.99139 0.94406 0.86742 0.80241 0.83546 0.78471 1.20245 1.21285 1.19124 1.20925 0.88640 0.94926 1.51555 0.90561 1.19797 0.97936 0.91423 0.96783 1.21388 0.74641 0.99865 1.01556 1.45521 1.08966 1.06166 1.78836 1.15979 0.81069 0.84884 0.77832 1.90899 1.67600 1.30569 1.58052 1.44440 1.04827 1.07858 1.80319 1.21287 0.86435 0.88686 1.01896 0.84511 1.23397 1.02562 1.03477 0.90956 1.22873 0.99270 1.00038 0.95459 1.22444 0.96566 0.96305 0.98186 1.22726 0.96605 0.96622 1.01384 1.22402 0.96714 0.95524 0.99132 0.92558 0.96463 0.96039 0.92092 0.92109 0.77582 0.77214 0.87950 0.88453 0.89600 0.91301 0.90177 0.91360 0.91534 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.02 6.54 56.52 0.37 -5.65 16 7 C -0.52 -14.73 9.66 -34.44 -0.33 -15.06 16 8 H 0.08 2.33 7.99 -52.49 -0.42 1.91 16 9 C -0.02 -0.50 4.15 -27.88 -0.12 -0.61 16 10 C 0.15 3.10 5.61 -4.04 -0.02 3.07 16 11 N -0.74 -12.57 5.56 -65.23 -0.36 -12.93 16 12 C 0.70 12.12 8.57 -86.92 -0.74 11.38 16 13 O -0.59 -12.73 15.91 5.29 0.08 -12.65 16 14 N -0.72 -9.14 5.55 -58.89 -0.33 -9.47 16 15 C 0.12 1.44 6.43 -68.14 -0.44 1.01 16 16 H 0.14 1.85 7.40 -51.93 -0.38 1.46 16 17 C -0.17 -1.49 10.46 -26.94 -0.28 -1.77 16 18 C -0.17 -1.56 3.01 -154.79 -0.47 -2.03 16 19 C -0.10 -0.77 8.10 -26.14 -0.21 -0.98 16 20 C -0.14 -0.94 8.08 -25.81 -0.21 -1.15 16 21 C -0.10 -0.79 8.08 -26.14 -0.21 -1.00 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 24 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 25 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.39 5.45 8.49 -40.82 -0.35 5.11 16 28 H 0.39 3.93 8.84 -40.82 -0.36 3.57 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -32.69 304.04 -8.72 -41.41 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.67 Total: 4.60 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -3.13 Total: -5.26 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: 0.08 Total: -49.12 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: 0.08 Total: -12.65 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.69 -8.72 -41.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872965947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.585 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds