Wall clock time and date at job start Sun Mar 29 2020 22:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47473 * 179.97438 * 10 9 7 12 12 C 1.34777 * 120.00376 * 180.02562 * 11 10 9 13 13 O 1.21591 * 119.99538 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00462 * 180.02562 * 12 11 10 15 15 C 1.46490 * 120.00326 * 179.97438 * 14 12 11 16 16 H 1.09000 * 115.56232 * 350.73775 * 15 14 12 17 17 C 1.53130 * 117.51444 * 136.53763 * 15 14 12 18 18 C 1.52463 * 59.85538 * 107.44607 * 17 15 14 19 19 C 1.53261 * 128.58144 * 117.60112 * 18 17 15 20 20 C 1.53883 * 86.88402 * 114.94081 * 19 18 17 21 21 C 1.53252 * 128.58595 * 242.39170 * 18 17 15 22 22 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 24 24 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 25 25 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 26 26 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 27 27 H 0.97004 * 119.99396 * 0.02562 * 11 10 9 28 28 H 0.97004 * 119.99310 * 359.97438 * 14 12 11 29 29 H 1.09002 * 117.51206 * 214.90064 * 17 15 14 30 30 H 1.09001 * 117.50945 * 359.97438 * 17 15 14 31 31 H 1.08994 * 113.65011 * 229.44454 * 19 18 17 32 32 H 1.09005 * 113.64280 * 0.44475 * 19 18 17 33 33 H 1.09000 * 113.59377 * 270.39664 * 20 19 18 34 34 H 1.08998 * 113.58970 * 139.57013 * 20 19 18 35 35 H 1.08997 * 113.64397 * 359.56343 * 21 18 17 36 36 H 1.08999 * 113.64188 * 130.47247 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4864 -2.6368 -0.0001 12 6 6.1602 -3.8040 -0.0008 13 8 5.5522 -4.8570 -0.0018 14 7 7.5080 -3.8042 -0.0003 15 6 8.2404 -5.0729 -0.0004 16 1 7.6349 -5.9654 0.1574 17 6 9.4481 -5.1924 -0.9342 18 6 9.6536 -5.0703 0.5715 19 6 10.2976 -6.0753 1.5329 20 6 11.4008 -5.0262 1.7572 21 6 10.3670 -3.9609 1.3519 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6798 -0.8895 24 1 3.8745 -0.6810 0.8905 25 1 3.6577 -3.1507 0.8897 26 1 3.6584 -3.1504 -0.8902 27 1 5.9714 -1.7967 0.0003 28 1 7.9930 -2.9641 0.0001 29 1 9.6370 -6.1638 -1.3911 30 1 9.6971 -4.3271 -1.5486 31 1 9.6984 -6.2764 2.4209 32 1 10.6506 -6.9833 1.0441 33 1 12.2338 -5.1132 1.0596 34 1 11.7238 -4.9480 2.7953 35 1 10.7756 -3.1739 0.7181 36 1 9.7864 -3.5724 2.1887 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872965947.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:40 Heat of formation + Delta-G solvation = -14.912421 kcal Electronic energy + Delta-G solvation = -16284.254485 eV Core-core repulsion = 13575.698055 eV Total energy + Delta-G solvation = -2708.556431 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26250 -40.05226 -36.74406 -35.78862 -34.80642 -33.07942 -31.46577 -26.84137 -26.54702 -23.90824 -23.36227 -22.52237 -21.86887 -19.73104 -19.06277 -18.91215 -17.45613 -16.65635 -16.34949 -16.08400 -15.97617 -15.76949 -15.14983 -15.08411 -14.57791 -13.73458 -13.39495 -13.34448 -13.18923 -13.03091 -12.43909 -12.31559 -12.19131 -12.15080 -11.75805 -11.65080 -11.54985 -11.34792 -11.14379 -10.79674 -10.78334 -10.17306 -9.44553 -8.29487 -6.36894 1.39680 1.42606 1.53863 1.64183 2.05832 2.37634 2.87973 3.05577 3.22931 3.59356 3.74770 3.82422 3.95187 3.98583 4.33727 4.44926 4.52904 4.63816 4.75772 4.85823 4.87119 4.87943 4.95796 5.10872 5.13279 5.16028 5.40411 5.41644 5.43993 5.52878 5.56523 5.66485 6.02114 6.23759 6.70523 7.11587 7.27545 7.57664 8.87486 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.047111 B = 0.003948 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.204547 B = 7090.506157 C = 7425.069553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.236 1.236 7 C -0.540 4.540 8 H 0.028 0.972 9 C -0.011 4.011 10 C 0.164 3.836 11 N -0.730 5.730 12 C 0.700 3.300 13 O -0.641 6.641 14 N -0.699 5.699 15 C 0.087 3.913 16 H 0.110 0.890 17 C -0.147 4.147 18 C -0.163 4.163 19 C -0.103 4.103 20 C -0.128 4.128 21 C -0.101 4.101 22 H 0.268 0.732 23 H 0.036 0.964 24 H 0.037 0.963 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.411 0.589 28 H 0.411 0.589 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.445 -5.079 1.358 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.047 0.953 9 C -0.049 4.049 10 C 0.040 3.960 11 N -0.385 5.385 12 C 0.400 3.600 13 O -0.523 6.523 14 N -0.353 5.353 15 C -0.019 4.019 16 H 0.128 0.872 17 C -0.185 4.185 18 C -0.165 4.165 19 C -0.141 4.141 20 C -0.165 4.165 21 C -0.138 4.138 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.247 0.753 28 H 0.248 0.752 29 H 0.130 0.870 30 H 0.128 0.872 31 H 0.098 0.902 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 26.713 -5.913 1.366 27.394 hybrid contribution -0.339 1.127 -0.078 1.179 sum 26.374 -4.786 1.288 26.835 Atomic orbital electron populations 1.70080 1.08624 1.28455 1.51986 1.26098 0.95703 1.03926 0.93641 0.85511 0.79642 0.77203 0.79335 1.18958 1.21255 1.15938 1.21260 0.91596 0.93409 1.51583 0.95335 1.19639 0.94347 0.92758 0.98112 1.20886 0.77053 0.98332 0.99751 1.45103 1.07308 1.07205 1.78932 1.16116 0.82357 0.83990 0.77554 1.90871 1.68997 1.32277 1.60164 1.44177 1.03058 1.09261 1.78783 1.21352 0.87290 0.87265 1.06024 0.87242 1.23448 0.99354 1.04579 0.91146 1.23022 0.96206 1.01443 0.95788 1.22532 0.96902 0.96886 0.97771 1.22712 0.96302 0.95254 1.02228 1.22461 0.96689 0.95748 0.98919 0.92308 0.94532 0.94426 0.94113 0.94079 0.75338 0.75223 0.86951 0.87204 0.90173 0.90530 0.89104 0.90556 0.90282 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 2 C 0.00 0.19 5.47 84.66 0.46 0.65 16 3 Si 0.96 42.33 27.47 68.60 1.88 44.22 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.24 -9.21 6.54 99.48 0.65 -8.56 16 7 C -0.54 -31.15 9.66 25.60 0.25 -30.90 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.82 16 9 C -0.01 -0.48 4.15 29.85 0.12 -0.36 16 10 C 0.16 6.92 5.61 86.38 0.48 7.41 16 11 N -0.73 -23.84 5.56 -478.54 -2.66 -26.50 16 12 C 0.70 23.88 8.57 179.06 1.53 25.42 16 13 O -0.64 -28.31 15.91 -4.00 -0.06 -28.37 16 14 N -0.70 -16.72 5.55 -458.48 -2.55 -19.26 16 15 C 0.09 1.95 6.43 44.86 0.29 2.24 16 16 H 0.11 3.07 7.40 -2.39 -0.02 3.05 16 17 C -0.15 -2.29 10.46 30.46 0.32 -1.97 16 18 C -0.16 -2.56 3.01 -52.37 -0.16 -2.72 16 19 C -0.10 -1.42 8.10 30.98 0.25 -1.17 16 20 C -0.13 -1.38 8.08 31.19 0.25 -1.13 16 21 C -0.10 -1.28 8.08 30.98 0.25 -1.03 16 22 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 24 H 0.04 1.58 7.20 -2.39 -0.02 1.57 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.41 10.23 8.49 -92.71 -0.79 9.44 16 28 H 0.41 7.06 8.84 -92.71 -0.82 6.24 16 29 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -73.47 304.04 0.39 -73.08 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -0.58 Total: 19.81 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 4.06 Total: -3.56 kcal Atomic # 7 Polarization: -100.27 SS G_CDS: -4.91 Total: -105.17 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.06 Total: -28.37 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.22 kcal Total: -73.47 0.39 -73.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872965947.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.170 kcal (2) G-P(sol) polarization free energy of solvation -73.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds