Wall clock time and date at job start Sun Mar 29 2020 22:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47425 * 270.00334 * 3 2 1 5 5 H 1.48505 * 109.46813 * 30.00158 * 3 2 1 6 6 H 1.48495 * 109.47404 * 149.99881 * 3 2 1 7 7 C 1.37875 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00235 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47323 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47219 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99994 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00125 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99836 * 180.02562 * 12 11 10 15 15 C 1.51872 * 108.55980 * 55.94395 * 14 12 11 16 16 C 1.53029 * 110.76080 * 187.50883 * 15 14 12 17 17 C 1.51376 * 108.61350 * 274.28983 * 16 15 14 18 18 C 1.29521 * 120.35897 * 71.92013 * 17 16 15 19 19 C 1.51368 * 120.36592 * 359.97438 * 18 17 16 20 20 C 1.51846 * 108.65038 * 179.97438 * 14 12 11 21 21 H 0.96997 * 120.00105 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46666 * 59.99641 * 9 7 2 23 23 H 1.09006 * 109.46783 * 300.00048 * 9 7 2 24 24 H 1.09002 * 109.47419 * 59.99705 * 10 9 7 25 25 H 1.09006 * 109.47314 * 299.99826 * 10 9 7 26 26 H 1.09003 * 108.60262 * 298.01464 * 14 12 11 27 27 H 1.09002 * 109.19818 * 67.18506 * 15 14 12 28 28 H 1.09003 * 109.23746 * 307.85372 * 15 14 12 29 29 H 1.08996 * 109.61401 * 154.54781 * 16 15 14 30 30 H 1.09007 * 109.61034 * 34.02360 * 16 15 14 31 31 H 1.07998 * 119.81373 * 251.89593 * 17 16 15 32 32 H 1.08006 * 119.81476 * 179.97438 * 18 17 16 33 33 H 1.09005 * 109.61186 * 47.83692 * 19 18 17 34 34 H 1.09003 * 109.61765 * 168.18474 * 19 18 17 35 35 H 1.09007 * 109.22116 * 52.20325 * 20 14 12 36 36 H 1.08998 * 109.21839 * 292.86242 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0001 11 8 5.4736 -2.6365 0.0011 12 6 6.0830 -3.8325 0.0006 13 8 5.4250 -4.8458 -0.0003 14 6 7.5880 -3.9113 0.0023 15 6 8.1114 -3.1327 1.1966 16 6 9.6369 -3.0222 1.1457 17 6 10.2324 -4.2600 1.7819 18 6 10.1746 -5.4015 1.1727 19 6 9.5104 -5.5126 -0.1829 20 6 7.9976 -5.3735 0.0020 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6808 0.8905 23 1 3.8752 -0.6796 -0.8895 24 1 3.6586 -3.1502 -0.8903 25 1 3.6580 -3.1506 0.8897 26 1 7.9617 -3.4440 -0.9088 27 1 7.8189 -3.6437 2.1138 28 1 7.6788 -2.1322 1.1906 29 1 9.9582 -2.1376 1.6955 30 1 9.9641 -2.9505 0.1084 31 1 10.7084 -4.1907 2.7489 32 1 10.6027 -6.2790 1.6346 33 1 9.8741 -4.7182 -0.8347 34 1 9.7401 -6.4823 -0.6246 35 1 7.4880 -5.8887 -0.8123 36 1 7.7083 -5.8274 0.9498 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873428677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:48 Heat of formation + Delta-G solvation = -97.400154 kcal Electronic energy + Delta-G solvation = -16750.651925 eV Core-core repulsion = 14006.225806 eV Total energy + Delta-G solvation = -2744.426118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.43432 -38.37177 -36.17425 -33.38042 -32.89886 -32.00485 -30.69907 -26.58041 -24.99087 -24.10723 -21.97226 -20.65969 -19.94433 -18.23427 -17.50014 -16.81532 -16.52620 -16.06094 -15.55995 -14.67138 -14.23154 -13.89069 -13.60484 -13.31401 -13.16156 -12.90593 -12.57542 -12.14098 -11.91038 -11.51526 -11.46741 -11.26410 -10.93389 -10.82908 -10.68402 -10.51632 -10.46912 -9.95989 -9.84963 -9.69363 -9.35201 -9.21523 -8.62796 -6.13321 -4.14534 2.09842 2.52812 3.11493 3.27382 3.34731 3.39044 4.38129 4.40509 4.59534 4.76567 4.82590 4.91512 5.02771 5.20228 5.22046 5.31900 5.36111 5.46248 5.58971 5.62756 5.82206 5.94412 5.98004 5.98125 5.99380 6.07575 6.18458 6.45742 6.47199 6.71325 6.81974 7.19830 7.22308 7.62243 8.15985 8.39522 8.88414 9.46252 10.99326 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044357 B = 0.004656 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.093654 B = 6012.789891 C = 6475.538728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.882 3.118 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.009 4.009 10 C 0.082 3.918 11 O -0.361 6.361 12 C 0.455 3.545 13 O -0.515 6.515 14 C -0.076 4.076 15 C -0.109 4.109 16 C -0.090 4.090 17 C -0.158 4.158 18 C -0.159 4.159 19 C -0.091 4.091 20 C -0.101 4.101 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.023 0.977 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.730 -7.176 1.243 22.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.046 4.046 10 C 0.009 3.991 11 O -0.277 6.277 12 C 0.298 3.702 13 O -0.404 6.404 14 C -0.095 4.095 15 C -0.147 4.147 16 C -0.127 4.127 17 C -0.176 4.176 18 C -0.177 4.177 19 C -0.128 4.128 20 C -0.138 4.138 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.121 0.879 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 21.303 -7.330 1.245 22.563 hybrid contribution 0.118 0.733 0.059 0.745 sum 21.421 -6.597 1.304 22.452 Atomic orbital electron populations 1.69897 1.06291 1.27210 1.50137 1.24939 0.94765 0.99185 0.94121 0.86744 0.80416 0.83263 0.78739 1.20049 1.21162 1.18769 1.20855 0.88328 0.95040 1.52356 0.90678 1.19617 0.96986 0.90201 0.97830 1.23367 0.72514 1.01516 1.01704 1.86477 1.26128 1.32332 1.82757 1.23699 0.91843 0.82065 0.72613 1.90630 1.67425 1.36709 1.45636 1.20776 0.88180 0.98605 1.01959 1.21305 0.95243 1.01145 0.96991 1.20817 0.94318 0.96439 1.01123 1.22590 1.00227 0.95030 0.99786 1.22566 1.00124 0.97786 0.97228 1.20817 0.94284 1.02450 0.95218 1.21188 0.94930 0.93693 1.04003 0.92430 0.95412 0.95836 0.91799 0.91787 0.87927 0.91206 0.89723 0.90902 0.90745 0.87531 0.87565 0.90838 0.91037 0.90516 0.90928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.53 -15.12 9.66 -34.44 -0.33 -15.45 16 8 H 0.08 2.30 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.22 4.42 -27.88 -0.12 -0.34 16 10 C 0.08 1.77 5.40 37.15 0.20 1.97 16 11 O -0.36 -6.85 9.75 -39.26 -0.38 -7.24 16 12 C 0.46 7.69 7.23 36.01 0.26 7.95 16 13 O -0.52 -10.11 15.51 -18.75 -0.29 -10.40 16 14 C -0.08 -0.91 2.14 -92.93 -0.20 -1.11 16 15 C -0.11 -1.19 4.88 -27.29 -0.13 -1.32 16 16 C -0.09 -0.77 5.62 -27.54 -0.15 -0.92 16 17 C -0.16 -1.34 9.34 -35.28 -0.33 -1.67 16 18 C -0.16 -1.34 9.34 -35.29 -0.33 -1.67 16 19 C -0.09 -0.76 5.62 -27.54 -0.15 -0.92 16 20 C -0.10 -1.10 4.30 -27.30 -0.12 -1.22 16 21 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 22 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 23 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 24 H 0.06 1.40 8.13 -51.93 -0.42 0.98 16 25 H 0.06 1.41 8.13 -51.93 -0.42 0.98 16 26 H 0.10 1.07 7.89 -51.93 -0.41 0.66 16 27 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 28 H 0.08 0.98 7.73 -51.93 -0.40 0.58 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.59 6.68 -51.93 -0.35 0.24 16 31 H 0.11 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.11 0.78 8.06 -52.48 -0.42 0.36 16 33 H 0.07 0.57 6.68 -51.93 -0.35 0.22 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.89 7.78 -51.92 -0.40 0.49 16 36 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 LS Contribution 293.08 15.07 4.42 4.42 Total: -1.00 -31.39 293.08 -7.28 -38.67 By element: Atomic # 1 Polarization: 2.79 SS G_CDS: -5.61 Total: -2.82 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -1.51 Total: -12.69 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.67 Total: -17.64 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -31.39 -7.28 -38.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873428677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.733 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds