Wall clock time and date at job start Sun Mar 29 2020 22:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00004 * 2 1 4 4 H 1.48496 * 109.47425 * 270.00334 * 3 2 1 5 5 H 1.48505 * 109.46813 * 30.00158 * 3 2 1 6 6 H 1.48495 * 109.47404 * 149.99881 * 3 2 1 7 7 C 1.37875 * 120.00043 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00235 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47323 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47219 * 180.02562 * 10 9 7 12 12 C 1.34231 * 116.99994 * 180.02562 * 11 10 9 13 13 O 1.20824 * 120.00125 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99836 * 180.02562 * 12 11 10 15 15 C 1.51872 * 108.55980 * 55.94395 * 14 12 11 16 16 C 1.53029 * 110.76080 * 187.50883 * 15 14 12 17 17 C 1.51376 * 108.61350 * 274.28983 * 16 15 14 18 18 C 1.29521 * 120.35897 * 71.92013 * 17 16 15 19 19 C 1.51368 * 120.36592 * 359.97438 * 18 17 16 20 20 C 1.51846 * 108.65038 * 179.97438 * 14 12 11 21 21 H 0.96997 * 120.00105 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46666 * 59.99641 * 9 7 2 23 23 H 1.09006 * 109.46783 * 300.00048 * 9 7 2 24 24 H 1.09002 * 109.47419 * 59.99705 * 10 9 7 25 25 H 1.09006 * 109.47314 * 299.99826 * 10 9 7 26 26 H 1.09003 * 108.60262 * 298.01464 * 14 12 11 27 27 H 1.09002 * 109.19818 * 67.18506 * 15 14 12 28 28 H 1.09003 * 109.23746 * 307.85372 * 15 14 12 29 29 H 1.08996 * 109.61401 * 154.54781 * 16 15 14 30 30 H 1.09007 * 109.61034 * 34.02360 * 16 15 14 31 31 H 1.07998 * 119.81373 * 251.89593 * 17 16 15 32 32 H 1.08006 * 119.81476 * 179.97438 * 18 17 16 33 33 H 1.09005 * 109.61186 * 47.83692 * 19 18 17 34 34 H 1.09003 * 109.61765 * 168.18474 * 19 18 17 35 35 H 1.09007 * 109.22116 * 52.20325 * 20 14 12 36 36 H 1.08998 * 109.21839 * 292.86242 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0001 11 8 5.4736 -2.6365 0.0011 12 6 6.0830 -3.8325 0.0006 13 8 5.4250 -4.8458 -0.0003 14 6 7.5880 -3.9113 0.0023 15 6 8.1114 -3.1327 1.1966 16 6 9.6369 -3.0222 1.1457 17 6 10.2324 -4.2600 1.7819 18 6 10.1746 -5.4015 1.1727 19 6 9.5104 -5.5126 -0.1829 20 6 7.9976 -5.3735 0.0020 21 1 -0.4850 0.8400 -0.0004 22 1 3.8745 -0.6808 0.8905 23 1 3.8752 -0.6796 -0.8895 24 1 3.6586 -3.1502 -0.8903 25 1 3.6580 -3.1506 0.8897 26 1 7.9617 -3.4440 -0.9088 27 1 7.8189 -3.6437 2.1138 28 1 7.6788 -2.1322 1.1906 29 1 9.9582 -2.1376 1.6955 30 1 9.9641 -2.9505 0.1084 31 1 10.7084 -4.1907 2.7489 32 1 10.6027 -6.2790 1.6346 33 1 9.8741 -4.7182 -0.8347 34 1 9.7401 -6.4823 -0.6246 35 1 7.4880 -5.8887 -0.8123 36 1 7.7083 -5.8274 0.9498 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873428677.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:48 Heat of formation + Delta-G solvation = -114.831634 kcal Electronic energy + Delta-G solvation = -16751.407811 eV Core-core repulsion = 14006.225806 eV Total energy + Delta-G solvation = -2745.182004 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.77703 -39.32236 -37.69112 -35.41821 -33.87697 -32.81701 -32.61634 -27.85515 -26.54705 -24.90756 -23.24704 -22.50262 -21.07204 -19.28160 -18.86295 -18.37713 -17.71513 -17.59231 -16.73611 -16.31062 -15.57580 -15.16030 -14.93096 -14.56725 -14.35945 -14.00254 -13.88119 -13.38334 -13.23562 -13.00895 -12.73384 -12.49647 -12.40906 -12.16550 -11.82575 -11.81900 -11.57819 -11.53951 -11.44788 -11.30045 -11.18761 -10.82346 -9.89874 -8.35601 -6.44315 1.14803 1.37840 1.39722 1.47104 1.52494 1.71885 2.33841 2.99253 3.50439 3.63161 3.79846 4.08474 4.14421 4.15581 4.20739 4.23691 4.45212 4.47987 4.58561 4.60192 4.65305 4.86254 4.92075 5.03341 5.09864 5.16614 5.22741 5.26962 5.30032 5.38762 5.49305 5.56636 5.84818 6.09481 6.14085 6.61711 6.70640 7.21005 8.80665 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.044357 B = 0.004656 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.093654 B = 6012.789891 C = 6475.538728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.243 1.243 7 C -0.545 4.545 8 H 0.033 0.967 9 C -0.002 4.002 10 C 0.092 3.908 11 O -0.358 6.358 12 C 0.451 3.549 13 O -0.546 6.546 14 C -0.067 4.067 15 C -0.107 4.107 16 C -0.085 4.085 17 C -0.164 4.164 18 C -0.165 4.165 19 C -0.085 4.085 20 C -0.097 4.097 21 H 0.271 0.729 22 H 0.036 0.964 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.128 0.872 27 H 0.059 0.941 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.841 -6.010 1.097 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.167 1.167 7 C -0.583 4.583 8 H 0.051 0.949 9 C -0.039 4.039 10 C 0.018 3.982 11 O -0.275 6.275 12 C 0.296 3.704 13 O -0.437 6.437 14 C -0.086 4.086 15 C -0.145 4.145 16 C -0.122 4.122 17 C -0.182 4.182 18 C -0.183 4.183 19 C -0.122 4.122 20 C -0.135 4.135 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.054 0.946 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.146 0.854 27 H 0.078 0.922 28 H 0.097 0.903 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 24.440 -6.185 1.100 25.234 hybrid contribution -0.898 0.244 0.114 0.938 sum 23.541 -5.941 1.214 24.310 Atomic orbital electron populations 1.70045 1.08389 1.28687 1.51314 1.25975 0.95680 1.03658 0.93313 0.85579 0.79530 0.77501 0.79615 1.18670 1.20558 1.16652 1.21131 0.90813 0.93777 1.52590 0.94867 1.19450 0.94089 0.91870 0.98522 1.22927 0.74543 0.99842 1.00847 1.86473 1.24113 1.33731 1.83149 1.24837 0.93708 0.80812 0.71064 1.90621 1.68508 1.37506 1.47039 1.20994 0.83937 0.99880 1.03743 1.21304 0.97138 1.00255 0.95771 1.20802 0.92134 0.97094 1.02186 1.22734 1.00251 0.94979 1.00241 1.22709 1.00126 0.98251 0.97228 1.20795 0.91943 1.03730 0.95737 1.21175 0.96940 0.92565 1.02829 0.92008 0.94583 0.94620 0.92664 0.92842 0.85447 0.92244 0.90320 0.89686 0.89554 0.86622 0.86658 0.89559 0.89778 0.91508 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.03 13.96 21.45 0.30 -58.73 16 2 C 0.01 0.68 5.47 84.65 0.46 1.15 16 3 Si 0.96 43.34 27.47 68.60 1.88 45.22 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 7 C -0.55 -31.91 9.66 25.60 0.25 -31.66 16 8 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 9 C 0.00 -0.09 4.42 29.85 0.13 0.04 16 10 C 0.09 4.03 5.40 71.98 0.39 4.41 16 11 O -0.36 -13.30 9.75 -51.43 -0.50 -13.81 16 12 C 0.45 14.97 7.23 71.24 0.52 15.49 16 13 O -0.55 -21.69 15.51 21.97 0.34 -21.34 16 14 C -0.07 -1.48 2.14 -12.29 -0.03 -1.51 16 15 C -0.11 -2.10 4.88 30.23 0.15 -1.95 16 16 C -0.09 -1.19 5.62 30.07 0.17 -1.03 16 17 C -0.16 -2.32 9.34 27.37 0.26 -2.06 16 18 C -0.17 -2.34 9.34 27.37 0.26 -2.08 16 19 C -0.09 -1.20 5.62 30.07 0.17 -1.03 16 20 C -0.10 -1.99 4.30 30.23 0.13 -1.86 16 21 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 22 H 0.04 1.67 7.20 -2.39 -0.02 1.65 16 23 H 0.04 1.63 7.57 -2.38 -0.02 1.61 16 24 H 0.05 2.48 8.13 -2.39 -0.02 2.46 16 25 H 0.05 2.42 8.13 -2.38 -0.02 2.40 16 26 H 0.13 2.25 7.89 -2.39 -0.02 2.23 16 27 H 0.06 1.28 7.86 -2.39 -0.02 1.27 16 28 H 0.08 1.65 7.73 -2.39 -0.02 1.64 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.03 6.68 -2.38 -0.02 1.01 16 31 H 0.12 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.12 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.09 1.02 6.68 -2.38 -0.02 1.00 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.49 7.78 -2.38 -0.02 1.47 16 36 H 0.06 1.34 7.86 -2.39 -0.02 1.32 16 Total: -1.00 -68.60 293.08 5.86 -62.75 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.99 Total: 8.01 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 2.85 Total: -22.09 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.30 Total: -58.73 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.16 Total: -35.15 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.88 Total: 45.22 kcal Total: -68.60 5.86 -62.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873428677.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.086 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds