Wall clock time and date at job start Sun Mar 29 2020 22:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 C 1.50697 * 109.47172 * 240.00217 * 2 1 3 5 5 H 1.07997 * 120.00306 * 239.99642 * 4 2 1 6 6 C 1.37882 * 119.99932 * 59.99805 * 4 2 1 7 7 N 1.31515 * 119.99654 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99890 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46652 * 60.00328 * 8 6 4 10 10 H 1.48501 * 109.46792 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47334 * 300.00241 * 8 6 4 12 12 C 1.50703 * 109.47336 * 120.00297 * 2 1 3 13 13 O 1.20827 * 120.00161 * 120.00119 * 12 2 1 14 14 O 1.34232 * 119.99925 * 299.99976 * 12 2 1 15 15 C 1.45197 * 116.99922 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.47316 * 30.00093 * 15 14 12 17 17 C 1.52993 * 109.47113 * 269.99747 * 15 14 12 18 18 C 1.53005 * 109.47031 * 150.00019 * 15 14 12 19 19 H 1.09002 * 115.55067 * 154.41755 * 18 15 14 20 20 C 1.53003 * 117.51993 * 8.71513 * 18 15 14 21 21 C 1.52991 * 117.49889 * 300.08668 * 18 15 14 22 22 C 1.52994 * 138.58981 * 336.62516 * 21 18 15 23 23 C 1.52995 * 138.59126 * 238.40133 * 21 18 15 24 24 H 1.09005 * 109.47175 * 299.99795 * 1 2 3 25 25 H 1.08994 * 109.47447 * 59.99498 * 1 2 3 26 26 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99511 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47472 * 179.97438 * 17 15 14 29 29 H 1.08995 * 109.47613 * 299.99894 * 17 15 14 30 30 H 1.09004 * 109.46952 * 60.00285 * 17 15 14 31 31 H 1.09003 * 117.49779 * 0.02562 * 20 18 15 32 32 H 1.08995 * 117.49866 * 145.02674 * 20 18 15 33 33 H 1.08999 * 117.49666 * 336.58848 * 22 21 18 34 34 H 1.08996 * 117.50179 * 121.61648 * 22 21 18 35 35 H 1.08997 * 117.50099 * 238.38532 * 23 21 18 36 36 H 1.08996 * 117.49432 * 23.41054 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5196 -4.0082 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1188 -4.0078 12 6 2.0323 -0.7105 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4496 15 6 2.2268 -0.9865 3.5896 16 1 3.1795 -1.4444 3.3238 17 6 1.2309 -2.0768 3.9898 18 6 2.4320 -0.0273 4.7639 19 1 2.3925 -0.4812 5.7541 20 6 1.8901 1.3960 4.6171 21 6 3.3978 1.1417 4.5607 22 6 4.5900 1.5041 3.6730 23 6 4.6788 1.6943 5.1886 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.7088 1.1615 -3.4843 28 1 1.6205 -2.6286 4.8453 29 1 0.2782 -1.6189 4.2556 30 1 1.0847 -2.7601 3.1532 31 1 1.3869 1.6492 3.6839 32 1 1.4942 1.8784 5.5107 33 1 5.1586 0.6841 3.2346 34 1 4.5055 2.3997 3.0576 35 1 4.6526 2.7150 5.5702 36 1 5.3058 0.9993 5.7471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873624714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:13 Heat of formation + Delta-G solvation = -42.252357 kcal Electronic energy + Delta-G solvation = -17310.725624 eV Core-core repulsion = 14568.690893 eV Total energy + Delta-G solvation = -2742.034730 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.81366 -38.11970 -35.68783 -33.85467 -32.95879 -30.74093 -30.10921 -25.18972 -24.21153 -22.97678 -22.31583 -20.66682 -19.33404 -18.95887 -16.68078 -16.14963 -15.61712 -15.36346 -14.93500 -14.77322 -14.43050 -13.77778 -13.13835 -12.69977 -12.50229 -12.29315 -11.77941 -11.57225 -11.45473 -11.35306 -11.00729 -10.81778 -10.71412 -10.67014 -10.38481 -10.20560 -10.03275 -9.86920 -9.77123 -9.48238 -9.03923 -9.01283 -8.42572 -6.08745 -4.13936 3.33097 3.35897 3.38191 3.39004 3.50742 3.78718 3.82597 4.40612 4.43293 4.83026 4.96031 5.22931 5.24916 5.34515 5.51371 5.62317 5.63658 5.69126 5.78438 5.82526 5.93306 6.01242 6.08486 6.21639 6.25229 6.40341 6.42871 6.68804 6.89968 6.91607 7.33195 7.47291 7.76600 7.96829 8.17232 8.90273 8.98194 9.51394 10.98649 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030905 B = 0.006306 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.775365 B = 4438.891076 C = 4665.124880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.062 0.938 4 C -0.512 4.512 5 H 0.074 0.926 6 C 0.062 3.938 7 N -0.893 5.893 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.465 3.535 13 O -0.520 6.520 14 O -0.355 6.355 15 C 0.109 3.891 16 H 0.080 0.920 17 C -0.162 4.162 18 C -0.104 4.104 19 H 0.116 0.884 20 C -0.112 4.112 21 C -0.226 4.226 22 C -0.127 4.127 23 C -0.133 4.133 24 H 0.023 0.977 25 H 0.095 0.905 26 H 0.030 0.970 27 H 0.263 0.737 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 1.170 14.017 14.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.080 0.920 4 C -0.550 4.550 5 H 0.092 0.908 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.407 6.407 14 O -0.274 6.274 15 C 0.054 3.946 16 H 0.098 0.902 17 C -0.220 4.220 18 C -0.122 4.122 19 H 0.134 0.866 20 C -0.148 4.148 21 C -0.226 4.226 22 C -0.164 4.164 23 C -0.170 4.170 24 H 0.042 0.958 25 H 0.113 0.887 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.110 0.890 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.914 0.978 13.865 14.031 hybrid contribution 0.409 -0.595 -0.742 1.035 sum 2.323 0.383 13.123 13.333 Atomic orbital electron populations 1.21720 0.95701 0.99957 1.01645 1.18719 0.94769 0.96873 0.85728 0.92030 1.21100 1.31851 1.13196 0.88856 0.90766 1.24933 0.94931 0.95018 0.99090 1.69874 1.36557 1.22799 1.23901 0.86449 0.79287 0.79687 0.81401 1.20099 1.21210 1.20117 1.25285 0.76322 0.83141 0.84237 1.90475 1.36590 1.26917 1.86704 1.86657 1.70001 1.55571 1.15146 1.21870 0.97987 0.91010 0.83755 0.90169 1.22110 0.99780 0.98156 1.01931 1.22214 1.02126 0.89980 0.97904 0.86604 1.22692 0.91969 0.96676 1.03501 1.21450 0.88740 1.04687 1.07758 1.22599 0.98226 1.02828 0.92744 1.22646 0.96999 1.01117 0.96198 0.95817 0.88654 0.95079 0.92678 0.91535 0.91651 0.91789 0.86989 0.88997 0.88806 0.88435 0.88831 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.90 37.15 0.33 -2.83 16 2 C 0.06 1.49 2.74 -92.93 -0.25 1.24 16 3 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.51 -14.52 8.37 -34.44 -0.29 -14.81 16 5 H 0.07 2.19 6.76 -52.49 -0.35 1.84 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.01 11.32 55.43 0.63 -24.38 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 C 0.47 11.05 7.22 36.01 0.26 11.31 16 13 O -0.52 -13.40 14.68 -18.75 -0.28 -13.67 16 14 O -0.36 -7.11 8.13 -39.26 -0.32 -7.43 16 15 C 0.11 1.81 2.92 -26.73 -0.08 1.73 16 16 H 0.08 1.46 7.16 -51.93 -0.37 1.09 16 17 C -0.16 -2.33 9.53 37.15 0.35 -1.97 16 18 C -0.10 -1.42 5.71 -90.62 -0.52 -1.94 16 19 H 0.12 1.30 8.11 -51.93 -0.42 0.88 16 20 C -0.11 -1.50 9.88 -26.73 -0.26 -1.77 16 21 C -0.23 -3.13 5.34 -154.52 -0.82 -3.96 16 22 C -0.13 -1.77 10.53 -26.73 -0.28 -2.05 16 23 C -0.13 -1.52 10.53 -26.73 -0.28 -1.80 16 24 H 0.02 0.49 8.11 -51.93 -0.42 0.07 16 25 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.11 1.72 7.05 -51.93 -0.37 1.35 16 32 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 304.95 15.07 4.60 4.60 Total: -1.00 -29.73 304.95 -7.94 -37.67 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -5.61 Total: 1.83 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -1.94 Total: -15.25 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.59 Total: -21.10 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.73 -7.94 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873624714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.582 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds