Wall clock time and date at job start Sun Mar 29 2020 22:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.47303 * 2 1 4 4 C 1.50697 * 109.47172 * 240.00217 * 2 1 3 5 5 H 1.07997 * 120.00306 * 239.99642 * 4 2 1 6 6 C 1.37882 * 119.99932 * 59.99805 * 4 2 1 7 7 N 1.31515 * 119.99654 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99890 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46652 * 60.00328 * 8 6 4 10 10 H 1.48501 * 109.46792 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47334 * 300.00241 * 8 6 4 12 12 C 1.50703 * 109.47336 * 120.00297 * 2 1 3 13 13 O 1.20827 * 120.00161 * 120.00119 * 12 2 1 14 14 O 1.34232 * 119.99925 * 299.99976 * 12 2 1 15 15 C 1.45197 * 116.99922 * 179.97438 * 14 12 2 16 16 H 1.08994 * 109.47316 * 30.00093 * 15 14 12 17 17 C 1.52993 * 109.47113 * 269.99747 * 15 14 12 18 18 C 1.53005 * 109.47031 * 150.00019 * 15 14 12 19 19 H 1.09002 * 115.55067 * 154.41755 * 18 15 14 20 20 C 1.53003 * 117.51993 * 8.71513 * 18 15 14 21 21 C 1.52991 * 117.49889 * 300.08668 * 18 15 14 22 22 C 1.52994 * 138.58981 * 336.62516 * 21 18 15 23 23 C 1.52995 * 138.59126 * 238.40133 * 21 18 15 24 24 H 1.09005 * 109.47175 * 299.99795 * 1 2 3 25 25 H 1.08994 * 109.47447 * 59.99498 * 1 2 3 26 26 H 1.09004 * 109.47303 * 180.02562 * 1 2 3 27 27 H 0.97003 * 119.99511 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.47472 * 179.97438 * 17 15 14 29 29 H 1.08995 * 109.47613 * 299.99894 * 17 15 14 30 30 H 1.09004 * 109.46952 * 60.00285 * 17 15 14 31 31 H 1.09003 * 117.49779 * 0.02562 * 20 18 15 32 32 H 1.08995 * 117.49866 * 145.02674 * 20 18 15 33 33 H 1.08999 * 117.49666 * 336.58848 * 22 21 18 34 34 H 1.08996 * 117.50179 * 121.61648 * 22 21 18 35 35 H 1.08997 * 117.50099 * 238.38532 * 23 21 18 36 36 H 1.08996 * 117.49432 * 23.41054 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.8279 -2.5196 -4.0082 10 1 1.8278 -0.4190 -5.2204 11 1 3.8074 -1.1188 -4.0078 12 6 2.0323 -0.7105 1.2304 13 8 2.7270 -1.6928 1.1195 14 8 1.7081 -0.2519 2.4496 15 6 2.2268 -0.9865 3.5896 16 1 3.1795 -1.4444 3.3238 17 6 1.2309 -2.0768 3.9898 18 6 2.4320 -0.0273 4.7639 19 1 2.3925 -0.4812 5.7541 20 6 1.8901 1.3960 4.6171 21 6 3.3978 1.1417 4.5607 22 6 4.5900 1.5041 3.6730 23 6 4.6788 1.6943 5.1886 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.7088 1.1615 -3.4843 28 1 1.6205 -2.6286 4.8453 29 1 0.2782 -1.6189 4.2556 30 1 1.0847 -2.7601 3.1532 31 1 1.3869 1.6492 3.6839 32 1 1.4942 1.8784 5.5107 33 1 5.1586 0.6841 3.2346 34 1 4.5055 2.3997 3.0576 35 1 4.6526 2.7150 5.5702 36 1 5.3058 0.9993 5.7471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873624714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:13 Heat of formation + Delta-G solvation = -56.866857 kcal Electronic energy + Delta-G solvation = -17311.359356 eV Core-core repulsion = 14568.690893 eV Total energy + Delta-G solvation = -2742.668463 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.50173 -39.37821 -37.31239 -35.92862 -34.20725 -32.63257 -31.45431 -27.30488 -25.72746 -24.56287 -23.31251 -22.20162 -20.89677 -20.08488 -18.60334 -18.11840 -17.34196 -16.93788 -16.38085 -15.95952 -15.82044 -15.32028 -14.90627 -14.27608 -14.20439 -13.63107 -13.36331 -13.06375 -12.88506 -12.79840 -12.66095 -12.52867 -12.39330 -12.31827 -12.04764 -11.90857 -11.77865 -11.14302 -11.09924 -10.88625 -10.79713 -10.60748 -10.52346 -8.21475 -6.34907 1.40555 1.42180 1.48291 1.50638 1.91833 2.42330 2.70147 2.75307 3.08332 3.37736 3.73417 3.88161 4.05268 4.08960 4.20143 4.38504 4.59943 4.66347 4.71993 4.76002 4.79790 4.81853 4.82445 4.88966 4.95244 4.98467 5.01843 5.16736 5.22349 5.31982 5.39274 5.55878 5.69896 5.87691 6.09547 6.71170 7.09481 7.33889 8.84886 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.030905 B = 0.006306 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.775365 B = 4438.891076 C = 4665.124880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 H 0.046 0.954 4 C -0.540 4.540 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.963 3.037 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.275 1.275 12 C 0.473 3.527 13 O -0.547 6.547 14 O -0.350 6.350 15 C 0.099 3.901 16 H 0.059 0.941 17 C -0.157 4.157 18 C -0.100 4.100 19 H 0.152 0.848 20 C -0.109 4.109 21 C -0.250 4.250 22 C -0.157 4.157 23 C -0.098 4.098 24 H 0.048 0.952 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.269 0.731 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.603 1.276 15.735 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.032 3.968 3 H 0.063 0.937 4 C -0.578 4.578 5 H 0.072 0.928 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.788 3.212 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.200 1.200 12 C 0.319 3.681 13 O -0.437 6.437 14 O -0.268 6.268 15 C 0.044 3.956 16 H 0.077 0.923 17 C -0.214 4.214 18 C -0.117 4.117 19 H 0.169 0.831 20 C -0.146 4.146 21 C -0.250 4.250 22 C -0.194 4.194 23 C -0.135 4.135 24 H 0.067 0.933 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.723 1.103 15.604 15.738 hybrid contribution 0.480 -0.592 -1.216 1.435 sum 2.203 0.511 14.388 14.565 Atomic orbital electron populations 1.21539 0.94345 0.99800 1.01942 1.18630 0.95901 0.95855 0.86379 0.93670 1.21220 1.32700 1.13280 0.90618 0.92765 1.25643 0.94870 0.95648 1.01545 1.69955 1.36595 1.23331 1.24822 0.85538 0.78681 0.78729 0.78289 1.19829 1.19678 1.20023 1.24764 0.75767 0.82433 0.85137 1.90453 1.37772 1.28040 1.87388 1.86605 1.69566 1.55727 1.14867 1.22283 0.97596 0.92417 0.83291 0.92338 1.22107 0.99959 0.97142 1.02215 1.22290 1.02194 0.89511 0.97737 0.83069 1.22707 0.91616 0.96616 1.03638 1.21707 0.89440 1.05173 1.08682 1.22608 0.99510 1.02319 0.94932 1.22747 0.94643 1.02375 0.93688 0.93291 0.90425 0.95328 0.92212 0.88049 0.90288 0.94313 0.89540 0.85935 0.90437 0.89133 0.86844 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 8.90 71.98 0.64 -5.08 16 2 C 0.05 2.72 2.74 -12.29 -0.03 2.69 16 3 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 4 C -0.54 -31.51 8.37 25.60 0.21 -31.29 16 5 H 0.05 3.32 6.76 -2.91 -0.02 3.30 16 6 C 0.02 1.28 5.30 84.66 0.45 1.73 16 7 N -0.91 -51.22 11.32 21.45 0.24 -50.98 16 8 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 9 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 12 C 0.47 23.12 7.22 71.24 0.51 23.64 16 13 O -0.55 -29.19 14.68 21.96 0.32 -28.87 16 14 O -0.35 -14.13 8.13 -51.44 -0.42 -14.55 16 15 C 0.10 3.20 2.92 30.59 0.09 3.29 16 16 H 0.06 2.16 7.16 -2.39 -0.02 2.14 16 17 C -0.16 -4.23 9.53 71.98 0.69 -3.54 16 18 C -0.10 -2.48 5.71 -10.79 -0.06 -2.54 16 19 H 0.15 2.72 8.11 -2.39 -0.02 2.70 16 20 C -0.11 -2.70 9.88 30.59 0.30 -2.40 16 21 C -0.25 -6.49 5.34 -52.19 -0.28 -6.77 16 22 C -0.16 -4.36 10.53 30.59 0.32 -4.04 16 23 C -0.10 -1.98 10.53 30.59 0.32 -1.66 16 24 H 0.05 2.05 8.11 -2.38 -0.02 2.03 16 25 H 0.08 4.04 6.07 -2.39 -0.01 4.02 16 26 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 28 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.09 2.60 7.05 -2.39 -0.02 2.58 16 32 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -65.04 304.95 6.39 -58.65 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.05 Total: 15.15 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.17 Total: -25.98 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.24 Total: -50.98 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -0.10 Total: -43.42 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -65.04 6.39 -58.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873624714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.786 kcal (2) G-P(sol) polarization free energy of solvation -65.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds