Wall clock time and date at job start Sun Mar 29 2020 22:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.45200 * 109.47003 * 119.99974 * 2 1 3 5 5 C 1.34234 * 116.99857 * 270.00226 * 4 2 1 6 6 O 1.20823 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99706 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47125 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47505 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99628 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00334 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00354 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 120.00007 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47169 * 89.99295 * 13 11 9 15 15 H 1.48498 * 109.47197 * 209.99931 * 13 11 9 16 16 H 1.48496 * 109.46763 * 329.99400 * 13 11 9 17 17 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 18 18 H 1.08995 * 115.54814 * 34.33364 * 17 2 1 19 19 C 1.53001 * 117.50084 * 248.62346 * 17 2 1 20 20 C 1.52991 * 117.49994 * 180.02562 * 17 2 1 21 21 C 1.52999 * 138.58532 * 336.59671 * 20 17 2 22 22 C 1.52994 * 138.58982 * 238.39013 * 20 17 2 23 23 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 26 26 H 1.09003 * 109.47541 * 299.99778 * 7 5 4 27 27 H 1.08999 * 109.47468 * 59.99981 * 7 5 4 28 28 H 1.08997 * 109.47361 * 300.00164 * 8 7 5 29 29 H 1.09003 * 109.47195 * 60.00301 * 8 7 5 30 30 H 0.96997 * 120.00481 * 180.02562 * 12 11 9 31 31 H 1.08999 * 117.49417 * 359.97438 * 19 17 2 32 32 H 1.08992 * 117.50051 * 145.02222 * 19 17 2 33 33 H 1.09001 * 117.49933 * 336.59685 * 21 20 17 34 34 H 1.09000 * 117.49616 * 121.61860 * 21 20 17 35 35 H 1.09007 * 117.49616 * 238.38131 * 22 20 17 36 36 H 1.09003 * 117.50006 * 23.39156 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0641 2.2812 6 8 1.9982 1.2519 2.2504 7 6 2.7182 -0.5772 3.5495 8 6 2.8634 0.4891 4.6371 9 6 3.3639 -0.1522 5.9057 10 1 3.5592 -1.2141 5.9333 11 6 3.5734 0.6167 7.0308 12 7 4.0097 0.0570 8.1380 13 14 3.2362 2.4535 6.9828 14 1 1.8266 2.7083 7.3742 15 1 4.1460 3.1486 7.9284 16 1 3.4680 2.9635 5.6076 17 6 2.0401 -0.7213 -1.2492 18 1 1.4311 -0.5979 -2.1447 19 6 2.7419 -2.0663 -1.0513 20 6 3.5550 -0.8287 -1.4339 21 6 4.8210 -0.1013 -0.9769 22 6 4.6174 -0.4253 -2.4582 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.0086 -1.3369 3.8775 27 1 3.6870 -1.0409 3.3641 28 1 3.5731 1.2485 4.3090 29 1 1.8947 0.9531 4.8228 30 1 4.1567 0.5979 8.9296 31 1 2.8407 -2.4371 -0.0311 32 1 2.5947 -2.8282 -1.8167 33 1 4.7205 0.9401 -0.6710 34 1 5.5661 -0.6816 -0.4325 35 1 5.2285 -1.2188 -2.8885 36 1 4.3830 0.4029 -3.1270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873625650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:32 Heat of formation + Delta-G solvation = -44.615263 kcal Electronic energy + Delta-G solvation = -16826.361011 eV Core-core repulsion = 14084.223818 eV Total energy + Delta-G solvation = -2742.137194 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28635 -38.43141 -36.17574 -33.62564 -33.25190 -31.43484 -30.57906 -26.54864 -24.16678 -22.51500 -22.22120 -20.50168 -19.61575 -19.19078 -17.56561 -16.60429 -16.03229 -15.73983 -15.10916 -14.98871 -14.40794 -14.03358 -13.72902 -13.10049 -12.77325 -12.59079 -12.33502 -12.00666 -11.72594 -11.57720 -11.45803 -11.03656 -10.97493 -10.68512 -10.30862 -10.17057 -10.10168 -10.00764 -9.89877 -9.74943 -9.61172 -9.25396 -8.55507 -6.07071 -4.06833 2.74092 3.00971 3.34233 3.41158 3.50492 3.55372 3.58172 4.18767 4.46375 4.59855 4.74136 4.95478 5.08714 5.13974 5.27777 5.29194 5.44502 5.49620 5.58211 5.60868 5.68777 5.79599 5.80270 5.83534 6.00657 6.02409 6.04025 6.09287 6.16804 6.53101 6.87827 7.24628 7.31930 7.71409 8.26560 8.47701 8.95346 9.54892 11.05581 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.005260 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.823179 B = 5321.829552 C = 5557.304147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.112 3.888 3 H 0.084 0.916 4 O -0.354 6.354 5 C 0.458 3.542 6 O -0.513 6.513 7 C -0.096 4.096 8 C -0.001 4.001 9 C -0.527 4.527 10 H 0.075 0.925 11 C 0.071 3.929 12 N -0.901 5.901 13 Si 0.876 3.124 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.262 1.262 17 C -0.106 4.106 18 H 0.119 0.881 19 C -0.111 4.111 20 C -0.228 4.228 21 C -0.128 4.128 22 C -0.131 4.131 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.097 0.903 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.230 -2.361 -20.739 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.057 3.943 3 H 0.102 0.898 4 O -0.271 6.271 5 C 0.302 3.698 6 O -0.400 6.400 7 C -0.133 4.133 8 C -0.039 4.039 9 C -0.564 4.564 10 H 0.093 0.907 11 C -0.130 4.130 12 N -0.539 5.539 13 Si 0.703 3.297 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.186 1.186 17 C -0.124 4.124 18 H 0.137 0.863 19 C -0.148 4.148 20 C -0.228 4.228 21 C -0.165 4.165 22 C -0.168 4.168 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.129 0.871 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.255 -1.955 -20.589 20.936 hybrid contribution -0.226 1.110 0.037 1.133 sum -3.481 -0.845 -20.552 20.862 Atomic orbital electron populations 1.22136 0.94143 1.02983 1.02919 1.21983 0.93904 0.96568 0.81862 0.89783 1.86599 1.77342 1.42785 1.20424 1.24692 0.73584 0.86271 0.85290 1.90598 1.48195 1.17115 1.84095 1.21524 1.02403 1.01304 0.88105 1.19469 0.97694 0.93883 0.92844 1.21035 1.44838 0.96817 0.93738 0.90674 1.24946 0.94301 0.98576 0.95218 1.69902 1.46013 1.36195 1.01823 0.86812 0.78450 0.85819 0.78575 1.20161 1.21309 1.18620 1.22218 0.91818 1.00986 0.97401 0.86287 1.22683 0.99408 0.89626 1.03068 1.21464 0.89956 1.04373 1.06959 1.22624 0.96670 1.00554 0.96671 1.22656 0.99424 1.02400 0.92284 0.91102 0.91439 0.91706 0.88443 0.88466 0.95669 0.96114 0.92605 0.87126 0.88783 0.88784 0.88363 0.88677 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.53 37.16 0.35 -1.54 16 2 C 0.11 1.51 2.92 -26.73 -0.08 1.43 16 3 H 0.08 1.27 7.16 -51.93 -0.37 0.90 16 4 O -0.35 -5.62 8.23 -39.27 -0.32 -5.94 16 5 C 0.46 8.64 7.93 36.00 0.29 8.92 16 6 O -0.51 -11.04 15.20 -18.75 -0.28 -11.32 16 7 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 8 C 0.00 -0.03 3.33 -27.88 -0.09 -0.13 16 9 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 10 H 0.08 2.23 7.99 -52.48 -0.42 1.81 16 11 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 12 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 13 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 14 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 15 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 16 H -0.26 -6.60 6.54 56.52 0.37 -6.23 16 17 C -0.11 -1.18 5.71 -90.63 -0.52 -1.70 16 18 H 0.12 1.07 8.11 -51.93 -0.42 0.65 16 19 C -0.11 -1.21 9.87 -26.76 -0.26 -1.48 16 20 C -0.23 -2.61 5.33 -154.54 -0.82 -3.44 16 21 C -0.13 -1.49 10.53 -26.73 -0.28 -1.77 16 22 C -0.13 -1.26 10.53 -26.74 -0.28 -1.54 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.10 1.79 8.14 -51.93 -0.42 1.37 16 27 H 0.10 1.80 8.14 -51.93 -0.42 1.37 16 28 H 0.02 0.64 7.16 -51.93 -0.37 0.27 16 29 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.11 1.35 7.04 -51.93 -0.37 0.98 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -31.82 306.89 -7.90 -39.72 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.73 Total: -1.21 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.29 Total: -16.56 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.77 Total: -26.93 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.61 Total: -17.26 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.82 -7.90 -39.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873625650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.891 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds