Wall clock time and date at job start Sun Mar 29 2020 22:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 O 1.45200 * 109.47003 * 119.99974 * 2 1 3 5 5 C 1.34234 * 116.99857 * 270.00226 * 4 2 1 6 6 O 1.20823 * 120.00331 * 359.97438 * 5 4 2 7 7 C 1.50697 * 119.99706 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.47125 * 179.97438 * 7 5 4 9 9 C 1.50698 * 109.47505 * 179.97438 * 8 7 5 10 10 H 1.08006 * 119.99628 * 0.02562 * 9 8 7 11 11 C 1.37872 * 120.00334 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00354 * 179.97438 * 11 9 8 13 13 Si 1.86806 * 120.00007 * 0.02562 * 11 9 8 14 14 H 1.48498 * 109.47169 * 89.99295 * 13 11 9 15 15 H 1.48498 * 109.47197 * 209.99931 * 13 11 9 16 16 H 1.48496 * 109.46763 * 329.99400 * 13 11 9 17 17 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 18 18 H 1.08995 * 115.54814 * 34.33364 * 17 2 1 19 19 C 1.53001 * 117.50084 * 248.62346 * 17 2 1 20 20 C 1.52991 * 117.49994 * 180.02562 * 17 2 1 21 21 C 1.52999 * 138.58532 * 336.59671 * 20 17 2 22 22 C 1.52994 * 138.58982 * 238.39013 * 20 17 2 23 23 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 24 24 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 26 26 H 1.09003 * 109.47541 * 299.99778 * 7 5 4 27 27 H 1.08999 * 109.47468 * 59.99981 * 7 5 4 28 28 H 1.08997 * 109.47361 * 300.00164 * 8 7 5 29 29 H 1.09003 * 109.47195 * 60.00301 * 8 7 5 30 30 H 0.96997 * 120.00481 * 180.02562 * 12 11 9 31 31 H 1.08999 * 117.49417 * 359.97438 * 19 17 2 32 32 H 1.08992 * 117.50051 * 145.02222 * 19 17 2 33 33 H 1.09001 * 117.49933 * 336.59685 * 21 20 17 34 34 H 1.09000 * 117.49616 * 121.61860 * 21 20 17 35 35 H 1.09007 * 117.49616 * 238.38131 * 22 20 17 36 36 H 1.09003 * 117.50006 * 23.39156 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0140 -0.6845 1.1856 5 6 2.2171 0.0641 2.2812 6 8 1.9982 1.2519 2.2504 7 6 2.7182 -0.5772 3.5495 8 6 2.8634 0.4891 4.6371 9 6 3.3639 -0.1522 5.9057 10 1 3.5592 -1.2141 5.9333 11 6 3.5734 0.6167 7.0308 12 7 4.0097 0.0570 8.1380 13 14 3.2362 2.4535 6.9828 14 1 1.8266 2.7083 7.3742 15 1 4.1460 3.1486 7.9284 16 1 3.4680 2.9635 5.6076 17 6 2.0401 -0.7213 -1.2492 18 1 1.4311 -0.5979 -2.1447 19 6 2.7419 -2.0663 -1.0513 20 6 3.5550 -0.8287 -1.4339 21 6 4.8210 -0.1013 -0.9769 22 6 4.6174 -0.4253 -2.4582 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 2.0086 -1.3369 3.8775 27 1 3.6870 -1.0409 3.3641 28 1 3.5731 1.2485 4.3090 29 1 1.8947 0.9531 4.8228 30 1 4.1567 0.5979 8.9296 31 1 2.8407 -2.4371 -0.0311 32 1 2.5947 -2.8282 -1.8167 33 1 4.7205 0.9401 -0.6710 34 1 5.5661 -0.6816 -0.4325 35 1 5.2285 -1.2188 -2.8885 36 1 4.3830 0.4029 -3.1270 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873625650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:32 Heat of formation + Delta-G solvation = -61.493939 kcal Electronic energy + Delta-G solvation = -16827.092926 eV Core-core repulsion = 14084.223818 eV Total energy + Delta-G solvation = -2742.869108 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66205 -39.44803 -37.48691 -35.64661 -34.27990 -33.39395 -31.57318 -28.45949 -25.26599 -23.84838 -23.31328 -21.90515 -20.99339 -20.09515 -19.38288 -18.33083 -17.43819 -17.01847 -16.32426 -16.03171 -15.86116 -15.50919 -15.11000 -14.82613 -14.37009 -13.96901 -13.52300 -13.40152 -12.95745 -12.91371 -12.60821 -12.41033 -12.25326 -12.05132 -11.92383 -11.89141 -11.81536 -11.48979 -11.39897 -10.91670 -10.83276 -10.80378 -10.61926 -8.33316 -6.37580 1.22742 1.32700 1.34779 1.48531 1.69978 2.33068 2.67400 2.74176 3.02038 3.35297 3.71233 3.81215 3.86347 4.01997 4.16215 4.27419 4.35458 4.36401 4.59169 4.68864 4.72027 4.77543 4.79335 4.80256 4.89951 4.95652 4.99770 5.14938 5.21904 5.24272 5.30163 5.33811 5.45547 5.58798 6.19935 6.67801 6.82586 7.27718 8.82347 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.032557 B = 0.005260 C = 0.005037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.823179 B = 5321.829552 C = 5557.304147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 H 0.065 0.935 4 O -0.347 6.347 5 C 0.468 3.532 6 O -0.543 6.543 7 C -0.092 4.092 8 C 0.004 3.996 9 C -0.532 4.532 10 H 0.051 0.949 11 C 0.017 3.983 12 N -0.942 5.942 13 Si 0.938 3.062 14 H -0.267 1.267 15 H -0.278 1.278 16 H -0.260 1.260 17 C -0.102 4.102 18 H 0.149 0.851 19 C -0.108 4.108 20 C -0.249 4.249 21 C -0.152 4.152 22 C -0.106 4.106 23 H 0.098 0.902 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.113 0.887 27 H 0.109 0.891 28 H 0.015 0.985 29 H 0.015 0.985 30 H 0.269 0.731 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.111 0.889 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.006 -2.284 -23.045 23.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.049 3.951 3 H 0.083 0.917 4 O -0.264 6.264 5 C 0.313 3.687 6 O -0.433 6.433 7 C -0.129 4.129 8 C -0.034 4.034 9 C -0.570 4.570 10 H 0.069 0.931 11 C -0.181 4.181 12 N -0.582 5.582 13 Si 0.762 3.238 14 H -0.192 1.192 15 H -0.203 1.203 16 H -0.184 1.184 17 C -0.120 4.120 18 H 0.166 0.834 19 C -0.145 4.145 20 C -0.249 4.249 21 C -0.189 4.189 22 C -0.142 4.142 23 H 0.117 0.883 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.129 0.871 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -4.035 -1.900 -22.916 23.346 hybrid contribution 0.034 1.004 0.710 1.230 sum -4.000 -0.897 -22.206 22.582 Atomic orbital electron populations 1.22136 0.92391 1.03902 1.03288 1.22316 0.95367 0.95826 0.81593 0.91724 1.86568 1.76942 1.42350 1.20493 1.24279 0.72989 0.85661 0.85760 1.90589 1.49676 1.18291 1.84716 1.21320 1.03791 1.00128 0.87681 1.19299 0.96662 0.94679 0.92746 1.21327 1.44290 0.96000 0.95357 0.93071 1.25777 0.94263 1.03163 0.94933 1.70015 1.47454 1.38056 1.02674 0.85838 0.78839 0.80423 0.78695 1.19166 1.20292 1.18443 1.22298 0.91993 1.00779 0.96929 0.83381 1.22722 0.98881 0.89959 1.02914 1.21693 0.90187 1.04857 1.08159 1.22632 0.97440 0.99869 0.98990 1.22743 0.97736 1.02786 0.90978 0.88285 0.90189 0.93816 0.86919 0.87242 0.96677 0.96649 0.92243 0.88858 0.86320 0.90183 0.88774 0.87084 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 9.53 71.98 0.69 -2.66 16 2 C 0.10 2.64 2.92 30.60 0.09 2.72 16 3 H 0.06 1.92 7.16 -2.39 -0.02 1.90 16 4 O -0.35 -10.69 8.23 -51.46 -0.42 -11.12 16 5 C 0.47 17.47 7.93 71.24 0.56 18.04 16 6 O -0.54 -23.34 15.20 21.97 0.33 -23.01 16 7 C -0.09 -3.60 5.75 29.85 0.17 -3.42 16 8 C 0.00 0.18 3.33 29.85 0.10 0.28 16 9 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 10 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 11 C 0.02 0.99 5.47 84.65 0.46 1.45 16 12 N -0.94 -58.65 13.96 21.45 0.30 -58.35 16 13 Si 0.94 46.01 27.47 68.60 1.88 47.90 16 14 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 16 H -0.26 -12.60 6.54 99.48 0.65 -11.95 16 17 C -0.10 -2.00 5.71 -10.80 -0.06 -2.06 16 18 H 0.15 2.06 8.11 -2.39 -0.02 2.04 16 19 C -0.11 -2.09 9.87 30.58 0.30 -1.79 16 20 C -0.25 -5.22 5.33 -52.20 -0.28 -5.50 16 21 C -0.15 -3.45 10.53 30.59 0.32 -3.12 16 22 C -0.11 -1.77 10.53 30.59 0.32 -1.45 16 23 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 4.06 8.14 -2.39 -0.02 4.04 16 27 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 28 H 0.01 0.76 7.16 -2.39 -0.02 0.74 16 29 H 0.02 0.76 7.53 -2.39 -0.02 0.74 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.09 2.14 7.04 -2.39 -0.02 2.12 16 32 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 35 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -68.39 306.89 6.01 -62.38 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.99 Total: 10.00 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 2.93 Total: -27.80 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.30 Total: -58.35 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.09 Total: -34.13 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.88 Total: 47.90 kcal Total: -68.39 6.01 -62.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873625650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.887 kcal (2) G-P(sol) polarization free energy of solvation -68.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds