Wall clock time and date at job start Sun Mar 29 2020 22:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48502 * 109.47323 * 239.99679 * 3 2 1 5 5 H 1.48505 * 109.46890 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47365 * 119.99591 * 3 2 1 7 7 C 1.37875 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00765 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99830 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99740 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99775 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00205 * 179.97438 * 13 11 10 15 15 C 1.52292 * 115.26016 * 249.14706 * 14 13 11 16 16 C 1.51990 * 115.89191 * 181.06777 * 14 13 11 17 17 H 1.08999 * 116.54629 * 358.28245 * 16 14 13 18 18 C 1.52706 * 120.50884 * 209.99745 * 16 14 13 19 19 C 1.52879 * 110.15214 * 21.45782 * 18 16 14 20 20 C 1.53302 * 108.58241 * 305.47757 * 19 18 16 21 21 C 1.52076 * 114.63693 * 34.41565 * 14 13 11 22 22 H 0.97004 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46549 * 59.99722 * 9 7 2 24 24 H 1.09000 * 109.46994 * 300.00737 * 9 7 2 25 25 H 0.96998 * 120.00493 * 359.97438 * 10 9 7 26 26 H 0.96997 * 119.99667 * 0.02562 * 13 11 10 27 27 H 1.09004 * 117.53287 * 145.85510 * 15 14 13 28 28 H 1.08999 * 117.56386 * 0.58813 * 15 14 13 29 29 H 1.09003 * 109.35689 * 261.25103 * 18 16 14 30 30 H 1.08996 * 109.24691 * 141.60003 * 18 16 14 31 31 H 1.09008 * 109.61681 * 185.75400 * 19 18 16 32 32 H 1.08990 * 109.76864 * 65.30076 * 19 18 16 33 33 H 1.08998 * 109.61983 * 314.71528 * 20 19 18 34 34 H 1.08998 * 109.61657 * 194.17121 * 20 19 18 35 35 H 1.09002 * 109.26697 * 46.58054 * 21 14 13 36 36 H 1.08996 * 109.27059 * 287.07790 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6126 0.0027 11 6 1.7538 -4.8833 0.0033 12 8 0.5583 -5.1055 0.0035 13 7 2.6296 -5.9078 0.0037 14 6 2.1413 -7.2889 0.0049 15 6 2.3875 -8.0641 1.2925 16 6 3.2090 -8.3703 0.0308 17 1 4.2452 -8.0323 0.0170 18 6 2.9542 -9.7271 -0.6220 19 6 1.8404 -9.6100 -1.6627 20 6 0.6053 -9.0001 -0.9899 21 6 0.8545 -7.5071 -0.7756 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 3.1567 -3.4354 0.0022 26 1 3.5832 -5.7305 0.0039 27 1 1.6351 -8.7933 1.5933 28 1 2.8901 -7.5425 2.1070 29 1 2.6602 -10.4464 0.1424 30 1 3.8680 -10.0694 -1.1077 31 1 1.5955 -10.5993 -2.0495 32 1 2.1663 -8.9677 -2.4807 33 1 0.4357 -9.4845 -0.0283 34 1 -0.2657 -9.1375 -1.6306 35 1 0.9331 -7.0130 -1.7440 36 1 0.0199 -7.0793 -0.2202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875539596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:48 Heat of formation + Delta-G solvation = -22.001904 kcal Electronic energy + Delta-G solvation = -16984.336512 eV Core-core repulsion = 14275.472658 eV Total energy + Delta-G solvation = -2708.863854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.28063 -38.31502 -34.26045 -33.95033 -32.37754 -31.77910 -30.13813 -26.97466 -24.65709 -23.04049 -21.97449 -21.37657 -19.92023 -18.50359 -17.84732 -16.73651 -15.89080 -15.02402 -14.69673 -14.52129 -14.01889 -13.86243 -13.76183 -13.36966 -13.07900 -12.55697 -12.19036 -11.92705 -11.76402 -11.67103 -11.09910 -10.95455 -10.86379 -10.82399 -10.68283 -10.28402 -10.06683 -9.87284 -9.36032 -8.98757 -8.70165 -8.43980 -7.71605 -6.13163 -4.19709 3.25148 3.27214 3.32311 3.35338 3.68584 4.08237 4.34390 4.65633 4.70866 4.84274 4.93827 5.03465 5.19578 5.22715 5.23630 5.42301 5.58457 5.64894 5.72466 5.85728 5.94225 6.02373 6.13587 6.16970 6.25099 6.43486 6.65651 7.00820 7.16247 7.55183 7.59499 7.60177 7.93999 8.07688 8.79128 8.98371 9.37604 9.51859 10.97057 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057788 B = 0.004535 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.410516 B = 6172.232723 C = 6392.179470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.268 3.732 10 N -0.730 5.730 11 C 0.695 3.305 12 O -0.593 6.593 13 N -0.732 5.732 14 C 0.157 3.843 15 C -0.195 4.195 16 C -0.155 4.155 17 H 0.101 0.899 18 C -0.084 4.084 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.082 4.082 22 H 0.266 0.734 23 H 0.025 0.975 24 H 0.024 0.976 25 H 0.385 0.615 26 H 0.391 0.609 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.069 -17.604 -1.037 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.382 5.382 11 C 0.395 3.605 12 O -0.472 6.472 13 N -0.386 5.386 14 C 0.069 3.931 15 C -0.234 4.234 16 C -0.175 4.175 17 H 0.119 0.881 18 C -0.122 4.122 19 C -0.159 4.159 20 C -0.160 4.160 21 C -0.120 4.120 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.217 0.783 26 H 0.225 0.775 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.753 -17.582 -1.039 18.528 hybrid contribution 1.525 1.203 0.115 1.946 sum 7.277 -16.379 -0.924 17.946 Atomic orbital electron populations 1.69966 1.06085 1.27351 1.48906 1.24934 0.94904 0.99355 0.94775 0.86478 0.79406 0.82375 0.78640 1.20110 1.21069 1.20112 1.21197 0.93215 0.90498 1.53183 0.92055 1.18963 0.87758 0.81016 0.97577 1.45739 1.10737 1.04417 1.77319 1.16122 0.85273 0.80860 0.78207 1.90825 1.14177 1.83774 1.58454 1.44778 1.08487 1.03788 1.81594 1.19982 0.95441 0.78954 0.98768 1.23682 1.03213 1.04298 0.92190 1.22630 0.96649 0.96548 1.01645 0.88077 1.21020 0.98812 0.94306 0.98018 1.21602 0.95595 1.00629 0.98101 1.21686 0.97648 0.96016 1.00631 1.21042 0.95791 0.94932 1.00205 0.92421 0.95746 0.95767 0.78284 0.77511 0.88354 0.88857 0.91540 0.91745 0.92086 0.91657 0.91933 0.91546 0.91498 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.93 9.28 -34.44 -0.32 -15.25 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.27 5.43 -5.19 -0.03 7.24 16 10 N -0.73 -15.92 5.55 -66.41 -0.37 -16.29 16 11 C 0.70 14.61 8.39 -86.92 -0.73 13.88 16 12 O -0.59 -14.63 13.59 5.29 0.07 -14.56 16 13 N -0.73 -11.59 5.49 -53.69 -0.29 -11.88 16 14 C 0.16 2.23 2.79 -133.17 -0.37 1.86 16 15 C -0.19 -2.39 9.51 -26.76 -0.25 -2.64 16 16 C -0.16 -1.69 5.99 -90.95 -0.54 -2.23 16 17 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 18 C -0.08 -0.76 5.83 -26.94 -0.16 -0.92 16 19 C -0.12 -1.18 5.92 -26.64 -0.16 -1.33 16 20 C -0.12 -1.37 5.70 -26.64 -0.15 -1.53 16 21 C -0.08 -1.23 4.20 -27.27 -0.11 -1.35 16 22 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 23 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.39 7.22 8.34 -40.82 -0.34 6.88 16 26 H 0.39 5.04 8.74 -40.82 -0.36 4.69 16 27 H 0.10 1.13 7.26 -51.93 -0.38 0.75 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.56 8.06 -51.93 -0.42 0.14 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 33 H 0.06 0.66 7.11 -51.93 -0.37 0.30 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.10 1.77 6.45 -51.93 -0.33 1.43 16 LS Contribution 292.31 15.07 4.41 4.41 Total: -1.00 -31.79 292.31 -8.93 -40.72 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.53 Total: 7.81 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.93 Total: -0.58 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.07 Total: -53.80 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.07 Total: -14.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.79 -8.93 -40.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.714 kcal (2) G-P(sol) polarization free energy of solvation -31.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds