Wall clock time and date at job start Sun Mar 29 2020 22:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00171 * 2 1 4 4 H 1.48502 * 109.47323 * 239.99679 * 3 2 1 5 5 H 1.48505 * 109.46890 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47365 * 119.99591 * 3 2 1 7 7 C 1.37875 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00765 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99830 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47072 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99740 * 180.02562 * 10 9 7 12 12 O 1.21590 * 119.99775 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00069 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00205 * 179.97438 * 13 11 10 15 15 C 1.52292 * 115.26016 * 249.14706 * 14 13 11 16 16 C 1.51990 * 115.89191 * 181.06777 * 14 13 11 17 17 H 1.08999 * 116.54629 * 358.28245 * 16 14 13 18 18 C 1.52706 * 120.50884 * 209.99745 * 16 14 13 19 19 C 1.52879 * 110.15214 * 21.45782 * 18 16 14 20 20 C 1.53302 * 108.58241 * 305.47757 * 19 18 16 21 21 C 1.52076 * 114.63693 * 34.41565 * 14 13 11 22 22 H 0.97004 * 120.00064 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.46549 * 59.99722 * 9 7 2 24 24 H 1.09000 * 109.46994 * 300.00737 * 9 7 2 25 25 H 0.96998 * 120.00493 * 359.97438 * 10 9 7 26 26 H 0.96997 * 119.99667 * 0.02562 * 13 11 10 27 27 H 1.09004 * 117.53287 * 145.85510 * 15 14 13 28 28 H 1.08999 * 117.56386 * 0.58813 * 15 14 13 29 29 H 1.09003 * 109.35689 * 261.25103 * 18 16 14 30 30 H 1.08996 * 109.24691 * 141.60003 * 18 16 14 31 31 H 1.09008 * 109.61681 * 185.75400 * 19 18 16 32 32 H 1.08990 * 109.76864 * 65.30076 * 19 18 16 33 33 H 1.08998 * 109.61983 * 314.71528 * 20 19 18 34 34 H 1.08998 * 109.61657 * 194.17121 * 20 19 18 35 35 H 1.09002 * 109.26697 * 46.58054 * 21 14 13 36 36 H 1.08996 * 109.27059 * 287.07790 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6126 0.0027 11 6 1.7538 -4.8833 0.0033 12 8 0.5583 -5.1055 0.0035 13 7 2.6296 -5.9078 0.0037 14 6 2.1413 -7.2889 0.0049 15 6 2.3875 -8.0641 1.2925 16 6 3.2090 -8.3703 0.0308 17 1 4.2452 -8.0323 0.0170 18 6 2.9542 -9.7271 -0.6220 19 6 1.8404 -9.6100 -1.6627 20 6 0.6053 -9.0001 -0.9899 21 6 0.8545 -7.5071 -0.7756 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 3.1567 -3.4354 0.0022 26 1 3.5832 -5.7305 0.0039 27 1 1.6351 -8.7933 1.5933 28 1 2.8901 -7.5425 2.1070 29 1 2.6602 -10.4464 0.1424 30 1 3.8680 -10.0694 -1.1077 31 1 1.5955 -10.5993 -2.0495 32 1 2.1663 -8.9677 -2.4807 33 1 0.4357 -9.4845 -0.0283 34 1 -0.2657 -9.1375 -1.6306 35 1 0.9331 -7.0130 -1.7440 36 1 0.0199 -7.0793 -0.2202 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875539596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:48 Heat of formation + Delta-G solvation = -44.506349 kcal Electronic energy + Delta-G solvation = -16985.312378 eV Core-core repulsion = 14275.472658 eV Total energy + Delta-G solvation = -2709.839720 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.54821 -39.78938 -36.13320 -35.29586 -34.31860 -33.03461 -31.23710 -29.01090 -25.63208 -24.92956 -23.10416 -22.62295 -21.45445 -19.61776 -19.54197 -18.09057 -17.74760 -16.75327 -16.38589 -15.93769 -15.33794 -15.11813 -14.88345 -14.69990 -14.22493 -14.05014 -13.97991 -13.66647 -12.99704 -12.88886 -12.72095 -12.67785 -12.22530 -12.07453 -11.77570 -11.67437 -11.49869 -11.20262 -10.96699 -10.78940 -10.47610 -9.99312 -9.44440 -8.28302 -6.45130 1.42930 1.47678 1.55642 1.81869 2.21945 2.39357 2.84026 3.06519 3.46379 3.69732 3.76262 3.89789 4.13760 4.20779 4.33732 4.48317 4.64913 4.72049 4.84330 4.93369 5.06834 5.09685 5.14980 5.26926 5.27157 5.28063 5.35570 5.41788 5.48863 5.51332 5.69627 5.74516 5.85451 6.27092 6.66588 7.24442 7.33186 7.76566 8.83916 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057788 B = 0.004535 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.410516 B = 6172.232723 C = 6392.179470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.083 0.917 9 C 0.288 3.712 10 N -0.725 5.725 11 C 0.692 3.308 12 O -0.636 6.636 13 N -0.710 5.710 14 C 0.114 3.886 15 C -0.192 4.192 16 C -0.121 4.121 17 H 0.121 0.879 18 C -0.084 4.084 19 C -0.118 4.118 20 C -0.116 4.116 21 C -0.077 4.077 22 H 0.269 0.731 23 H -0.016 1.016 24 H -0.016 1.016 25 H 0.403 0.597 26 H 0.409 0.591 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.040 -18.830 -0.996 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.595 4.595 8 H 0.101 0.899 9 C 0.164 3.836 10 N -0.379 5.379 11 C 0.392 3.608 12 O -0.518 6.518 13 N -0.365 5.365 14 C 0.027 3.973 15 C -0.231 4.231 16 C -0.140 4.140 17 H 0.138 0.862 18 C -0.122 4.122 19 C -0.156 4.156 20 C -0.154 4.154 21 C -0.116 4.116 22 H 0.078 0.922 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.238 0.762 26 H 0.245 0.755 27 H 0.124 0.876 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.800 -18.872 -0.997 20.847 hybrid contribution 0.546 1.491 0.101 1.591 sum 9.346 -17.381 -0.896 19.755 Atomic orbital electron populations 1.70137 1.08299 1.28648 1.49856 1.26067 0.95778 1.03872 0.93801 0.85184 0.77888 0.76508 0.79469 1.18670 1.20996 1.18666 1.21573 0.94270 0.90522 1.53099 0.89922 1.18376 0.88061 0.83312 0.93825 1.45336 1.10803 1.03858 1.77906 1.16319 0.85301 0.81368 0.77843 1.90815 1.16449 1.84451 1.60084 1.44537 1.08626 1.03495 1.79857 1.20276 0.97036 0.78591 1.01412 1.23745 1.03759 1.03659 0.91946 1.22793 0.96296 0.95619 0.99303 0.86152 1.21127 0.99584 0.93219 0.98238 1.21587 0.94680 1.01399 0.97885 1.21659 0.99030 0.93173 1.01554 1.20875 0.95159 0.97311 0.98206 0.92216 0.99770 0.99782 0.76221 0.75460 0.87550 0.88825 0.90001 0.89451 0.89728 0.92618 0.90912 0.91356 0.94197 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.99 42.81 29.54 68.60 2.03 44.84 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.56 -31.00 9.28 25.60 0.24 -30.76 16 8 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.29 16.40 5.43 85.64 0.46 16.87 16 10 N -0.73 -32.54 5.55 -482.28 -2.68 -35.22 16 11 C 0.69 30.18 8.39 179.05 1.50 31.68 16 12 O -0.64 -33.51 13.59 -4.00 -0.05 -33.57 16 13 N -0.71 -22.32 5.49 -442.03 -2.43 -24.74 16 14 C 0.11 3.17 2.79 2.73 0.01 3.18 16 15 C -0.19 -4.33 9.51 30.58 0.29 -4.04 16 16 C -0.12 -2.23 5.99 -11.01 -0.07 -2.30 16 17 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 18 C -0.08 -1.18 5.83 30.46 0.18 -1.00 16 19 C -0.12 -1.95 5.92 30.66 0.18 -1.77 16 20 C -0.12 -2.52 5.70 30.65 0.17 -2.35 16 21 C -0.08 -2.43 4.20 30.25 0.13 -2.30 16 22 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 23 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 24 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 25 H 0.40 14.96 8.34 -92.71 -0.77 14.18 16 26 H 0.41 9.86 8.74 -92.71 -0.81 9.05 16 27 H 0.11 2.22 7.26 -2.38 -0.02 2.20 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 0.98 8.06 -2.39 -0.02 0.96 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.05 1.04 8.04 -2.39 -0.02 1.02 16 33 H 0.07 1.43 7.11 -2.39 -0.02 1.41 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 2.13 6.45 -2.39 -0.02 2.11 16 Total: -1.00 -73.13 292.31 0.22 -72.91 By element: Atomic # 1 Polarization: 25.16 SS G_CDS: -0.50 Total: 24.66 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 3.56 Total: 7.92 kcal Atomic # 7 Polarization: -111.94 SS G_CDS: -4.82 Total: -116.76 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.57 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.13 0.22 -72.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875539596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.406 kcal (2) G-P(sol) polarization free energy of solvation -73.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds