Wall clock time and date at job start Sun Mar 29 2020 23:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48497 * 109.46718 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47007 * 300.00307 * 3 2 1 6 6 H 1.48494 * 109.46959 * 60.00312 * 3 2 1 7 7 C 1.37878 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99739 * 179.72352 * 7 2 1 9 9 C 1.50697 * 119.99879 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.47143 * 111.00064 * 292.22391 * 10 9 7 12 12 C 1.52877 * 110.25779 * 184.20061 * 11 10 9 13 13 C 1.53386 * 109.95587 * 302.43410 * 12 11 10 14 14 C 1.52788 * 108.34237 * 56.90217 * 13 12 11 15 15 H 1.09009 * 109.46769 * 60.38771 * 14 13 12 16 16 C 1.52799 * 111.43218 * 181.61586 * 14 13 12 17 17 C 1.53066 * 108.40273 * 186.90730 * 16 14 13 18 18 N 1.45623 * 111.31047 * 312.14555 * 17 16 14 19 19 C 1.33723 * 124.66748 * 17.14235 * 18 17 16 20 20 O 1.21275 * 118.83367 * 175.90336 * 19 18 17 21 21 C 1.46398 * 110.99967 * 55.30455 * 10 9 7 22 22 H 1.09009 * 108.80103 * 291.92711 * 21 10 9 23 23 H 0.97001 * 119.99664 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47450 * 299.99897 * 9 7 2 25 25 H 1.08995 * 109.47425 * 60.00183 * 9 7 2 26 26 H 1.08995 * 109.33797 * 304.44039 * 11 10 9 27 27 H 1.08999 * 109.33339 * 64.11940 * 11 10 9 28 28 H 1.08998 * 109.39522 * 62.58508 * 12 11 10 29 29 H 1.09003 * 109.38875 * 182.29126 * 12 11 10 30 30 H 1.09003 * 109.68916 * 176.61468 * 13 12 11 31 31 H 1.08999 * 109.68908 * 297.15174 * 13 12 11 32 32 H 1.08996 * 109.67720 * 306.63903 * 16 14 13 33 33 H 1.09001 * 109.67298 * 67.17870 * 16 14 13 34 34 H 1.09001 * 109.11091 * 72.61649 * 17 16 14 35 35 H 1.08999 * 109.11038 * 191.73196 * 17 16 14 36 36 H 0.97005 * 117.66329 * 197.16717 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 2.9421 -3.6784 -1.2740 12 6 3.8538 -4.9053 -1.2979 13 6 4.8228 -4.8607 -0.1097 14 6 4.0028 -4.7721 1.1764 15 1 3.3602 -5.6488 1.2586 16 6 4.9032 -4.6834 2.4077 17 6 4.0235 -4.7727 3.6571 18 7 2.8799 -3.8759 3.5643 19 6 2.4353 -3.3251 2.4297 20 8 1.4269 -2.6522 2.4622 21 6 3.1386 -3.5095 1.1213 22 1 3.7864 -2.6478 0.9595 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 0.8897 25 1 0.6239 -2.5567 -0.8902 26 1 2.2326 -3.7397 -2.0992 27 1 3.5479 -2.7791 -1.3849 28 1 3.2469 -5.8085 -1.2362 29 1 4.4221 -4.9158 -2.2281 30 1 5.4298 -5.7660 -0.0967 31 1 5.4686 -3.9868 -0.1951 32 1 5.6162 -5.5079 2.4011 33 1 5.4390 -3.7342 2.4029 34 1 3.6661 -5.7963 3.7696 35 1 4.6167 -4.5039 4.5311 36 1 2.4071 -3.6627 4.3840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880532282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:27 Heat of formation + Delta-G solvation = -27.100668 kcal Electronic energy + Delta-G solvation = -18342.290917 eV Core-core repulsion = 15633.205964 eV Total energy + Delta-G solvation = -2709.084953 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25778 -37.24339 -36.03482 -33.20800 -31.82917 -31.11290 -28.76774 -26.59726 -24.33636 -23.57389 -22.31921 -20.60445 -19.61489 -18.78808 -16.71853 -16.31937 -15.69030 -15.13094 -14.66057 -14.15190 -13.96552 -13.74857 -13.52262 -13.05662 -12.85242 -12.47344 -12.07099 -11.84045 -11.44431 -11.41227 -10.94821 -10.83123 -10.59250 -10.52147 -10.39404 -10.11212 -9.96098 -9.68987 -9.40842 -8.56774 -8.52434 -7.94353 -7.08826 -5.81793 -3.86093 3.35475 3.42235 3.43263 3.44616 3.76639 4.55206 4.73544 4.85376 4.95811 5.11659 5.33029 5.42295 5.50055 5.52074 5.63252 5.64546 5.81278 5.88140 6.05077 6.08401 6.13078 6.25012 6.29358 6.37548 6.59995 6.68760 6.84679 7.24414 7.44661 7.78787 7.87426 8.11593 8.18526 8.46078 8.52726 9.07058 9.26228 9.75952 11.25299 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024477 B = 0.009885 C = 0.008457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.667991 B = 2832.011433 C = 3310.253641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.531 4.531 8 H 0.047 0.953 9 C 0.164 3.836 10 N -0.522 5.522 11 C 0.060 3.940 12 C -0.118 4.118 13 C -0.109 4.109 14 C -0.088 4.088 15 H 0.079 0.921 16 C -0.129 4.129 17 C 0.118 3.882 18 N -0.738 5.738 19 C 0.520 3.480 20 O -0.494 6.494 21 C 0.086 3.914 22 H 0.070 0.930 23 H 0.257 0.743 24 H 0.084 0.916 25 H 0.020 0.980 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.107 -11.512 4.076 16.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.135 4.135 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.040 3.960 10 N -0.247 5.247 11 C -0.069 4.069 12 C -0.156 4.156 13 C -0.147 4.147 14 C -0.107 4.107 15 H 0.097 0.903 16 C -0.168 4.168 17 C -0.006 4.006 18 N -0.394 5.394 19 C 0.306 3.694 20 O -0.366 6.366 21 C -0.026 4.026 22 H 0.088 0.912 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.038 0.962 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 10.227 -11.505 3.891 15.878 hybrid contribution 0.913 1.927 0.256 2.147 sum 11.140 -9.578 4.147 15.265 Atomic orbital electron populations 1.69959 1.05841 1.26023 1.50782 1.24853 0.94646 0.98571 0.95386 0.86725 0.79994 0.84852 0.77473 1.20189 1.21154 1.21125 1.21568 0.92446 0.92351 1.50669 0.93460 1.20419 0.91298 0.84491 0.99788 1.62638 1.15181 1.47293 0.99612 1.21957 0.96039 0.95825 0.93046 1.21655 0.97286 0.99586 0.97085 1.21551 0.97452 1.01194 0.94496 1.21240 0.96397 0.99085 0.93970 0.90252 1.21826 0.97930 1.02972 0.94044 1.21178 0.87616 0.93571 0.98281 1.45659 1.33046 1.50413 1.10244 1.20063 0.84841 0.78904 0.85555 1.90787 1.23758 1.37254 1.84780 1.20999 0.94107 0.96871 0.90623 0.91222 0.93280 0.89825 0.96184 0.91328 0.94435 0.91803 0.92326 0.92208 0.92231 0.90183 0.91214 0.92481 0.91614 0.77443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.88 13.29 55.43 0.74 -27.14 16 2 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.88 22.66 29.54 -169.99 -5.02 17.64 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.53 -15.42 7.20 -34.44 -0.25 -15.66 16 8 H 0.05 1.35 5.76 -52.49 -0.30 1.05 16 9 C 0.16 4.55 4.55 -4.97 -0.02 4.53 16 10 N -0.52 -11.68 4.82 -230.28 -1.11 -12.79 16 11 C 0.06 1.17 5.15 -3.75 -0.02 1.15 16 12 C -0.12 -1.74 6.06 -26.59 -0.16 -1.90 16 13 C -0.11 -1.45 5.45 -26.64 -0.15 -1.60 16 14 C -0.09 -1.28 2.06 -90.78 -0.19 -1.47 16 15 H 0.08 1.19 8.11 -51.92 -0.42 0.77 16 16 C -0.13 -1.47 5.46 -26.80 -0.15 -1.62 16 17 C 0.12 1.31 7.13 -4.48 -0.03 1.28 16 18 N -0.74 -11.42 5.44 -61.49 -0.33 -11.75 16 19 C 0.52 10.89 7.52 -11.94 -0.09 10.80 16 20 O -0.49 -12.96 13.43 5.56 0.07 -12.89 16 21 C 0.09 1.72 1.22 -69.57 -0.08 1.64 16 22 H 0.07 1.55 6.41 -51.92 -0.33 1.21 16 23 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 24 H 0.08 2.59 5.13 -52.33 -0.27 2.32 16 25 H 0.02 0.59 8.05 -51.93 -0.42 0.18 16 26 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 27 H 0.04 0.79 7.06 -51.93 -0.37 0.42 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.39 5.56 8.81 -40.82 -0.36 5.20 16 LS Contribution 275.92 15.07 4.16 4.16 Total: -1.00 -34.09 275.92 -8.13 -42.23 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.40 Total: 1.49 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -1.23 Total: -0.95 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.71 Total: -51.68 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: 0.07 Total: -12.89 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.09 -8.13 -42.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880532282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.127 kcal (2) G-P(sol) polarization free energy of solvation -34.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds