Wall clock time and date at job start Sun Mar 29 2020 23:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48497 * 109.46718 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47007 * 300.00307 * 3 2 1 6 6 H 1.48494 * 109.46959 * 60.00312 * 3 2 1 7 7 C 1.37878 * 119.99678 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99739 * 179.72352 * 7 2 1 9 9 C 1.50697 * 119.99879 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46911 * 179.97438 * 9 7 2 11 11 C 1.47143 * 111.00064 * 292.22391 * 10 9 7 12 12 C 1.52877 * 110.25779 * 184.20061 * 11 10 9 13 13 C 1.53386 * 109.95587 * 302.43410 * 12 11 10 14 14 C 1.52788 * 108.34237 * 56.90217 * 13 12 11 15 15 H 1.09009 * 109.46769 * 60.38771 * 14 13 12 16 16 C 1.52799 * 111.43218 * 181.61586 * 14 13 12 17 17 C 1.53066 * 108.40273 * 186.90730 * 16 14 13 18 18 N 1.45623 * 111.31047 * 312.14555 * 17 16 14 19 19 C 1.33723 * 124.66748 * 17.14235 * 18 17 16 20 20 O 1.21275 * 118.83367 * 175.90336 * 19 18 17 21 21 C 1.46398 * 110.99967 * 55.30455 * 10 9 7 22 22 H 1.09009 * 108.80103 * 291.92711 * 21 10 9 23 23 H 0.97001 * 119.99664 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47450 * 299.99897 * 9 7 2 25 25 H 1.08995 * 109.47425 * 60.00183 * 9 7 2 26 26 H 1.08995 * 109.33797 * 304.44039 * 11 10 9 27 27 H 1.08999 * 109.33339 * 64.11940 * 11 10 9 28 28 H 1.08998 * 109.39522 * 62.58508 * 12 11 10 29 29 H 1.09003 * 109.38875 * 182.29126 * 12 11 10 30 30 H 1.09003 * 109.68916 * 176.61468 * 13 12 11 31 31 H 1.08999 * 109.68908 * 297.15174 * 13 12 11 32 32 H 1.08996 * 109.67720 * 306.63903 * 16 14 13 33 33 H 1.09001 * 109.67298 * 67.17870 * 16 14 13 34 34 H 1.09001 * 109.11091 * 72.61649 * 17 16 14 35 35 H 1.08999 * 109.11038 * 191.73196 * 17 16 14 36 36 H 0.97005 * 117.66329 * 197.16717 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0050 9 6 1.2509 -2.4991 -0.0005 10 7 2.2055 -3.6157 -0.0018 11 6 2.9421 -3.6784 -1.2740 12 6 3.8538 -4.9053 -1.2979 13 6 4.8228 -4.8607 -0.1097 14 6 4.0028 -4.7721 1.1764 15 1 3.3602 -5.6488 1.2586 16 6 4.9032 -4.6834 2.4077 17 6 4.0235 -4.7727 3.6571 18 7 2.8799 -3.8759 3.5643 19 6 2.4353 -3.3251 2.4297 20 8 1.4269 -2.6522 2.4622 21 6 3.1386 -3.5095 1.1213 22 1 3.7864 -2.6478 0.9595 23 1 -0.4850 0.8401 -0.0004 24 1 0.6246 -2.5571 0.8897 25 1 0.6239 -2.5567 -0.8902 26 1 2.2326 -3.7397 -2.0992 27 1 3.5479 -2.7791 -1.3849 28 1 3.2469 -5.8085 -1.2362 29 1 4.4221 -4.9158 -2.2281 30 1 5.4298 -5.7660 -0.0967 31 1 5.4686 -3.9868 -0.1951 32 1 5.6162 -5.5079 2.4011 33 1 5.4390 -3.7342 2.4029 34 1 3.6661 -5.7963 3.7696 35 1 4.6167 -4.5039 4.5311 36 1 2.4071 -3.6627 4.3840 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880532282.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:27 Heat of formation + Delta-G solvation = -54.586176 kcal Electronic energy + Delta-G solvation = -18343.482778 eV Core-core repulsion = 15633.205964 eV Total energy + Delta-G solvation = -2710.276814 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.73896 -38.79512 -37.47304 -35.07343 -33.66712 -32.46630 -30.13568 -28.55218 -26.07983 -24.79000 -24.05298 -22.08893 -21.00807 -20.18437 -18.54072 -17.94317 -17.27457 -16.72740 -16.44427 -15.73106 -15.28530 -15.25860 -14.96956 -14.42396 -14.36533 -14.17311 -13.69613 -13.31228 -12.98434 -12.85742 -12.82061 -12.57864 -12.16134 -12.06157 -11.92272 -11.69845 -11.52345 -11.44787 -11.03464 -10.62415 -9.97682 -9.77920 -9.01186 -8.08723 -6.23441 1.29024 1.31194 1.41581 1.81152 2.37058 2.45617 3.17342 3.38630 3.71174 3.85698 3.93294 4.06766 4.25634 4.37841 4.48039 4.52593 4.62772 4.81448 4.90905 4.93237 4.99305 5.10293 5.11308 5.17060 5.29157 5.32906 5.37640 5.50349 5.57787 5.84933 6.10105 6.15541 6.27884 6.38765 6.65416 6.96189 7.42972 7.54535 8.96487 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.024477 B = 0.009885 C = 0.008457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.667991 B = 2832.011433 C = 3310.253641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.953 3.047 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.283 1.283 7 C -0.530 4.530 8 H 0.047 0.953 9 C 0.180 3.820 10 N -0.526 5.526 11 C 0.057 3.943 12 C -0.110 4.110 13 C -0.105 4.105 14 C -0.080 4.080 15 H 0.081 0.919 16 C -0.124 4.124 17 C 0.107 3.893 18 N -0.723 5.723 19 C 0.510 3.490 20 O -0.564 6.564 21 C 0.083 3.917 22 H 0.042 0.958 23 H 0.259 0.741 24 H 0.051 0.949 25 H -0.017 1.017 26 H 0.054 0.946 27 H 0.015 0.985 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.056 0.944 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.642 -13.303 4.869 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.778 3.222 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.065 0.935 9 C 0.054 3.946 10 N -0.251 5.251 11 C -0.071 4.071 12 C -0.147 4.147 13 C -0.143 4.143 14 C -0.099 4.099 15 H 0.099 0.901 16 C -0.162 4.162 17 C -0.015 4.015 18 N -0.376 5.376 19 C 0.297 3.703 20 O -0.442 6.442 21 C -0.029 4.029 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.001 0.999 26 H 0.072 0.928 27 H 0.033 0.967 28 H 0.090 0.910 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 13.835 -13.355 4.710 19.798 hybrid contribution -0.174 2.388 0.058 2.395 sum 13.661 -10.967 4.768 18.156 Atomic orbital electron populations 1.70116 1.07636 1.27041 1.52109 1.25800 0.95617 1.02720 0.95194 0.85591 0.79009 0.79873 0.77701 1.18922 1.19963 1.20947 1.21763 0.92369 0.93142 1.49633 0.93513 1.19955 0.92011 0.86363 0.96280 1.62526 1.16103 1.44465 1.01982 1.22065 0.96035 0.97781 0.91215 1.21619 0.96917 0.96691 0.99499 1.21588 0.96990 1.03205 0.92468 1.21280 0.96266 0.95520 0.96812 0.90080 1.21890 0.97820 1.04600 0.91910 1.21646 0.86341 0.93755 0.99775 1.45603 1.33791 1.49435 1.08761 1.20402 0.84227 0.78481 0.87199 1.90760 1.26817 1.40602 1.86028 1.21164 0.93460 0.99096 0.89159 0.94014 0.93196 0.93158 0.99863 0.92784 0.96675 0.91029 0.89702 0.87793 0.92528 0.85608 0.91821 0.89920 0.88065 0.76749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -61.21 13.29 21.45 0.28 -60.93 16 2 C 0.00 0.29 5.46 84.65 0.46 0.75 16 3 Si 0.95 47.87 29.54 68.60 2.03 49.90 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 7 C -0.53 -32.29 7.20 25.60 0.18 -32.11 16 8 H 0.05 2.79 5.76 -2.91 -0.02 2.77 16 9 C 0.18 10.68 4.55 85.56 0.39 11.07 16 10 N -0.53 -24.52 4.82 -882.46 -4.25 -28.77 16 11 C 0.06 2.28 5.15 86.22 0.44 2.72 16 12 C -0.11 -2.96 6.06 30.68 0.19 -2.77 16 13 C -0.11 -2.36 5.45 30.65 0.17 -2.20 16 14 C -0.08 -2.09 2.06 -10.90 -0.02 -2.11 16 15 H 0.08 2.15 8.11 -2.38 -0.02 2.13 16 16 C -0.12 -2.22 5.46 30.55 0.17 -2.06 16 17 C 0.11 1.90 7.13 86.57 0.62 2.51 16 18 N -0.72 -21.36 5.44 -467.42 -2.54 -23.90 16 19 C 0.51 21.82 7.52 87.51 0.66 22.48 16 20 O -0.56 -31.44 13.43 -3.01 -0.04 -31.48 16 21 C 0.08 3.35 1.22 43.98 0.05 3.41 16 22 H 0.04 1.91 6.41 -2.38 -0.02 1.90 16 23 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 24 H 0.05 3.39 5.13 -8.68 -0.04 3.34 16 25 H -0.02 -1.08 8.05 -2.39 -0.02 -1.10 16 26 H 0.05 2.23 8.07 -2.39 -0.02 2.22 16 27 H 0.01 0.65 7.06 -2.39 -0.02 0.64 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.26 8.12 -2.39 -0.02 1.24 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.40 10.92 8.81 -92.70 -0.82 10.10 16 Total: -1.00 -81.71 275.92 -0.99 -82.71 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.23 Total: 10.78 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 3.31 Total: 1.70 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -6.51 Total: -113.60 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.04 Total: -31.48 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -81.71 -0.99 -82.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880532282.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.122 kcal (2) G-P(sol) polarization free energy of solvation -81.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds