Wall clock time and date at job start Sun Mar 29 2020 23:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99736 * 2 1 4 4 H 1.48497 * 109.46705 * 239.99881 * 3 2 1 5 5 H 1.48492 * 109.47434 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46895 * 120.00182 * 3 2 1 7 7 C 1.37874 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99973 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46847 * 174.52989 * 9 7 2 11 11 C 1.47137 * 110.99833 * 315.85978 * 10 9 7 12 12 C 1.52885 * 110.24953 * 175.78305 * 11 10 9 13 13 C 1.53387 * 109.94325 * 57.58801 * 12 11 10 14 14 C 1.52792 * 108.35405 * 303.08151 * 13 12 11 15 15 H 1.08998 * 109.46799 * 299.58613 * 14 13 12 16 16 C 1.52793 * 111.42020 * 178.36578 * 14 13 12 17 17 C 1.54871 * 107.46491 * 172.41195 * 16 14 13 18 18 N 1.45621 * 111.23601 * 48.39376 * 17 16 14 19 19 C 1.33727 * 124.66951 * 342.48343 * 18 17 16 20 20 O 1.21287 * 118.83626 * 184.09777 * 19 18 17 21 21 C 1.46405 * 110.99842 * 192.76402 * 10 9 7 22 22 H 1.08993 * 108.80027 * 68.03814 * 21 10 9 23 23 H 0.97000 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47273 * 54.52771 * 9 7 2 25 25 H 1.09005 * 109.47625 * 294.52997 * 9 7 2 26 26 H 1.09005 * 109.34146 * 296.02021 * 11 10 9 27 27 H 1.08998 * 109.33822 * 55.54404 * 11 10 9 28 28 H 1.08994 * 109.39426 * 177.73436 * 12 11 10 29 29 H 1.08997 * 109.39333 * 297.44703 * 12 11 10 30 30 H 1.08993 * 109.68822 * 183.36836 * 13 12 11 31 31 H 1.09003 * 109.68576 * 62.79481 * 13 12 11 32 32 H 1.09000 * 109.68415 * 292.79048 * 16 14 13 33 33 H 1.08997 * 109.68192 * 53.34243 * 16 14 13 34 34 H 1.09000 * 109.46294 * 287.74087 * 17 16 14 35 35 H 1.08999 * 108.78497 * 168.60315 * 17 16 14 36 36 H 0.97006 * 117.66589 * 162.50045 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2002 -3.6126 -0.1300 11 6 3.2094 -3.3259 -1.1615 12 6 4.2478 -4.4470 -1.2119 13 6 3.5563 -5.7886 -1.4853 14 6 2.5065 -6.0188 -0.3993 15 1 2.9928 -6.0483 0.5757 16 6 1.7442 -7.3232 -0.6277 17 6 0.8499 -7.5625 0.6138 18 7 0.1002 -6.3638 0.9628 19 6 0.3961 -5.1309 0.5377 20 8 -0.2555 -4.1965 0.9541 21 6 1.5027 -4.8633 -0.4342 22 1 1.0807 -4.7952 -1.4369 23 1 -0.4850 0.8400 0.0004 24 1 0.5526 -2.5161 -0.8349 25 1 0.7002 -2.5999 0.9369 26 1 2.7202 -3.2431 -2.1321 27 1 3.7061 -2.3840 -0.9287 28 1 4.9647 -4.2408 -2.0066 29 1 4.7720 -4.4979 -0.2577 30 1 4.2920 -6.5925 -1.4611 31 1 3.0740 -5.7607 -2.4624 32 1 1.1371 -7.2406 -1.5292 33 1 2.4499 -8.1470 -0.7341 34 1 1.4730 -7.8525 1.4598 35 1 0.1507 -8.3689 0.3926 36 1 -0.6685 -6.4670 1.5454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880532283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:30 Heat of formation + Delta-G solvation = -28.457073 kcal Electronic energy + Delta-G solvation = -18031.441871 eV Core-core repulsion = 15322.298100 eV Total energy + Delta-G solvation = -2709.143771 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.36624 -37.39249 -36.07992 -33.32164 -31.88445 -31.22639 -28.93019 -26.67173 -24.48465 -23.58214 -22.41231 -20.53956 -19.66189 -18.97231 -16.79894 -16.23181 -16.02001 -15.08096 -14.68960 -14.36194 -14.08489 -13.78657 -13.72688 -13.07984 -13.01072 -12.43564 -12.17479 -11.85487 -11.59853 -11.41292 -11.14456 -10.72660 -10.64401 -10.61874 -10.50155 -10.27677 -9.99408 -9.75691 -9.13266 -8.75396 -8.48364 -8.16208 -7.12420 -5.86684 -3.88933 3.14965 3.39555 3.43725 3.46037 3.59283 4.50804 4.66533 4.69613 4.83309 5.00529 5.22421 5.34578 5.42386 5.46780 5.53040 5.58146 5.71179 5.76927 5.89634 5.97431 6.04911 6.22751 6.26050 6.27743 6.50045 6.78546 6.87157 7.10191 7.55014 7.62925 7.72002 7.90008 8.32693 8.34415 8.67318 8.84490 9.21597 9.72724 11.23415 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.008028 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.745655 B = 3486.896265 C = 4235.462894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.186 3.814 10 N -0.520 5.520 11 C 0.060 3.940 12 C -0.121 4.121 13 C -0.110 4.110 14 C -0.086 4.086 15 H 0.083 0.917 16 C -0.129 4.129 17 C 0.116 3.884 18 N -0.732 5.732 19 C 0.520 3.480 20 O -0.511 6.511 21 C 0.076 3.924 22 H 0.056 0.944 23 H 0.260 0.740 24 H -0.009 1.009 25 H 0.068 0.932 26 H 0.021 0.979 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.069 -16.684 -2.348 17.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.062 3.938 10 N -0.246 5.246 11 C -0.068 4.068 12 C -0.159 4.159 13 C -0.148 4.148 14 C -0.105 4.105 15 H 0.101 0.899 16 C -0.167 4.167 17 C -0.009 4.009 18 N -0.387 5.387 19 C 0.307 3.693 20 O -0.384 6.384 21 C -0.037 4.037 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.009 0.991 25 H 0.086 0.914 26 H 0.040 0.960 27 H 0.113 0.887 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.994 -16.042 -1.830 16.901 hybrid contribution -0.343 0.880 -0.613 1.126 sum 4.651 -15.162 -2.442 16.047 Atomic orbital electron populations 1.70009 1.05956 1.26456 1.50458 1.24987 0.94795 0.99039 0.95630 0.86653 0.79498 0.83279 0.78485 1.20402 1.21384 1.20233 1.21378 0.93148 0.90709 1.50826 0.91902 1.20138 0.89553 0.85435 0.98659 1.62290 1.16017 1.02198 1.44059 1.22106 0.93324 0.98576 0.92799 1.21702 0.98134 0.94573 1.01454 1.21575 0.97403 0.97871 0.97911 1.21221 0.95793 0.92707 1.00746 0.89885 1.22160 0.98677 0.98356 0.97489 1.21557 0.95083 0.86884 0.97381 1.45576 1.33427 1.06823 1.52917 1.20132 0.85506 0.81953 0.81732 1.90851 1.51027 1.40361 1.56203 1.21247 0.92400 0.94027 0.95996 0.92682 0.93071 0.99105 0.91394 0.96031 0.88651 0.92229 0.91582 0.92085 0.92343 0.91081 0.89984 0.92057 0.91405 0.77178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -28.23 13.29 55.43 0.74 -27.49 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -15.40 8.32 -34.44 -0.29 -15.69 16 8 H 0.06 1.78 5.80 -52.49 -0.30 1.47 16 9 C 0.19 5.31 3.84 -4.97 -0.02 5.29 16 10 N -0.52 -11.87 4.75 -230.26 -1.09 -12.97 16 11 C 0.06 1.21 4.98 -3.75 -0.02 1.19 16 12 C -0.12 -1.82 6.06 -26.59 -0.16 -1.98 16 13 C -0.11 -1.41 5.45 -26.64 -0.15 -1.55 16 14 C -0.09 -1.19 2.04 -90.78 -0.18 -1.38 16 15 H 0.08 1.23 8.09 -51.93 -0.42 0.80 16 16 C -0.13 -1.31 5.59 -25.85 -0.14 -1.46 16 17 C 0.12 1.15 7.17 -3.53 -0.03 1.13 16 18 N -0.73 -10.46 5.44 -60.51 -0.33 -10.79 16 19 C 0.52 10.32 7.54 -11.94 -0.09 10.23 16 20 O -0.51 -12.90 13.90 5.55 0.08 -12.82 16 21 C 0.08 1.44 1.68 -69.56 -0.12 1.33 16 22 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 23 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 24 H -0.01 -0.28 8.04 -51.93 -0.42 -0.70 16 25 H 0.07 2.17 5.69 -51.93 -0.30 1.88 16 26 H 0.02 0.45 8.12 -51.93 -0.42 0.02 16 27 H 0.10 2.10 5.57 -51.93 -0.29 1.81 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.39 5.11 8.81 -40.82 -0.36 4.75 16 LS Contribution 278.00 15.07 4.19 4.19 Total: -1.00 -34.86 278.00 -8.17 -43.04 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.44 Total: 0.73 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.29 Total: -1.29 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.69 Total: -51.25 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.08 Total: -12.82 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -34.86 -8.17 -43.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880532283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.582 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds