Wall clock time and date at job start Sun Mar 29 2020 23:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99736 * 2 1 4 4 H 1.48497 * 109.46705 * 239.99881 * 3 2 1 5 5 H 1.48492 * 109.47434 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.46895 * 120.00182 * 3 2 1 7 7 C 1.37874 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99639 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99973 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46847 * 174.52989 * 9 7 2 11 11 C 1.47137 * 110.99833 * 315.85978 * 10 9 7 12 12 C 1.52885 * 110.24953 * 175.78305 * 11 10 9 13 13 C 1.53387 * 109.94325 * 57.58801 * 12 11 10 14 14 C 1.52792 * 108.35405 * 303.08151 * 13 12 11 15 15 H 1.08998 * 109.46799 * 299.58613 * 14 13 12 16 16 C 1.52793 * 111.42020 * 178.36578 * 14 13 12 17 17 C 1.54871 * 107.46491 * 172.41195 * 16 14 13 18 18 N 1.45621 * 111.23601 * 48.39376 * 17 16 14 19 19 C 1.33727 * 124.66951 * 342.48343 * 18 17 16 20 20 O 1.21287 * 118.83626 * 184.09777 * 19 18 17 21 21 C 1.46405 * 110.99842 * 192.76402 * 10 9 7 22 22 H 1.08993 * 108.80027 * 68.03814 * 21 10 9 23 23 H 0.97000 * 120.00121 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47273 * 54.52771 * 9 7 2 25 25 H 1.09005 * 109.47625 * 294.52997 * 9 7 2 26 26 H 1.09005 * 109.34146 * 296.02021 * 11 10 9 27 27 H 1.08998 * 109.33822 * 55.54404 * 11 10 9 28 28 H 1.08994 * 109.39426 * 177.73436 * 12 11 10 29 29 H 1.08997 * 109.39333 * 297.44703 * 12 11 10 30 30 H 1.08993 * 109.68822 * 183.36836 * 13 12 11 31 31 H 1.09003 * 109.68576 * 62.79481 * 13 12 11 32 32 H 1.09000 * 109.68415 * 292.79048 * 16 14 13 33 33 H 1.08997 * 109.68192 * 53.34243 * 16 14 13 34 34 H 1.09000 * 109.46294 * 287.74087 * 17 16 14 35 35 H 1.08999 * 108.78497 * 168.60315 * 17 16 14 36 36 H 0.97006 * 117.66589 * 162.50045 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2002 -3.6126 -0.1300 11 6 3.2094 -3.3259 -1.1615 12 6 4.2478 -4.4470 -1.2119 13 6 3.5563 -5.7886 -1.4853 14 6 2.5065 -6.0188 -0.3993 15 1 2.9928 -6.0483 0.5757 16 6 1.7442 -7.3232 -0.6277 17 6 0.8499 -7.5625 0.6138 18 7 0.1002 -6.3638 0.9628 19 6 0.3961 -5.1309 0.5377 20 8 -0.2555 -4.1965 0.9541 21 6 1.5027 -4.8633 -0.4342 22 1 1.0807 -4.7952 -1.4369 23 1 -0.4850 0.8400 0.0004 24 1 0.5526 -2.5161 -0.8349 25 1 0.7002 -2.5999 0.9369 26 1 2.7202 -3.2431 -2.1321 27 1 3.7061 -2.3840 -0.9287 28 1 4.9647 -4.2408 -2.0066 29 1 4.7720 -4.4979 -0.2577 30 1 4.2920 -6.5925 -1.4611 31 1 3.0740 -5.7607 -2.4624 32 1 1.1371 -7.2406 -1.5292 33 1 2.4499 -8.1470 -0.7341 34 1 1.4730 -7.8525 1.4598 35 1 0.1507 -8.3689 0.3926 36 1 -0.6685 -6.4670 1.5454 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880532283.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:30 Heat of formation + Delta-G solvation = -56.969317 kcal Electronic energy + Delta-G solvation = -18032.678255 eV Core-core repulsion = 15322.298100 eV Total energy + Delta-G solvation = -2710.380155 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.80481 -38.92171 -37.47834 -35.18961 -33.74376 -32.52696 -30.34307 -28.56136 -26.14986 -24.85266 -24.06636 -22.09667 -21.02183 -20.27506 -18.39210 -18.10805 -17.57540 -16.62589 -16.47766 -15.79683 -15.45743 -15.33156 -15.07327 -14.50288 -14.42150 -14.13276 -13.71254 -13.34665 -13.21336 -12.83555 -12.70988 -12.59635 -12.34286 -12.08940 -11.86091 -11.84233 -11.52429 -11.39225 -10.82173 -10.68070 -10.15738 -9.92507 -9.05346 -8.17967 -6.30681 1.36013 1.42020 1.49524 1.60058 2.33995 2.39164 3.12905 3.29818 3.61360 3.76533 3.84162 3.98445 4.21420 4.29654 4.37720 4.47304 4.57612 4.76176 4.84203 4.92684 4.96016 5.05543 5.09472 5.16583 5.27992 5.31254 5.37472 5.54744 5.59804 5.63044 5.95302 6.07166 6.27183 6.35705 6.66512 6.89126 7.34632 7.38113 8.93602 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031856 B = 0.008028 C = 0.006609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.745655 B = 3486.896265 C = 4235.462894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.211 3.789 10 N -0.527 5.527 11 C 0.058 3.942 12 C -0.112 4.112 13 C -0.105 4.105 14 C -0.077 4.077 15 H 0.080 0.920 16 C -0.122 4.122 17 C 0.104 3.896 18 N -0.714 5.714 19 C 0.510 3.490 20 O -0.584 6.584 21 C 0.068 3.932 22 H 0.040 0.960 23 H 0.262 0.738 24 H -0.058 1.058 25 H 0.027 0.973 26 H 0.005 0.995 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.127 0.873 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -19.265 -2.877 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.186 1.186 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.579 4.579 8 H 0.092 0.908 9 C 0.085 3.915 10 N -0.252 5.252 11 C -0.069 4.069 12 C -0.150 4.150 13 C -0.142 4.142 14 C -0.096 4.096 15 H 0.098 0.902 16 C -0.160 4.160 17 C -0.018 4.018 18 N -0.367 5.367 19 C 0.297 3.703 20 O -0.463 6.463 21 C -0.044 4.044 22 H 0.057 0.943 23 H 0.070 0.930 24 H -0.040 1.040 25 H 0.045 0.955 26 H 0.023 0.977 27 H 0.088 0.912 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.124 0.876 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.145 0.855 34 H 0.102 0.898 35 H 0.124 0.876 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 7.686 -18.724 -2.366 20.378 hybrid contribution -1.212 1.556 -0.444 2.022 sum 6.474 -17.168 -2.810 18.562 Atomic orbital electron populations 1.70205 1.08187 1.27681 1.51507 1.26104 0.95749 1.03717 0.94766 0.85360 0.78068 0.77347 0.79361 1.18601 1.20879 1.19041 1.21798 0.93815 0.91565 1.50679 0.90845 1.19564 0.89502 0.87888 0.94576 1.62168 1.15429 1.01966 1.45664 1.22163 0.93597 1.00218 0.90961 1.21659 0.96802 0.93838 1.02698 1.21608 0.97706 0.97540 0.97354 1.21272 0.94909 0.92077 1.01322 0.90191 1.22223 0.99094 0.97256 0.97377 1.22042 0.96067 0.85327 0.98388 1.45535 1.33403 1.06459 1.51267 1.20430 0.85126 0.82945 0.81774 1.90825 1.53388 1.43195 1.58934 1.21485 0.93881 0.94284 0.94766 0.94259 0.92952 1.04040 0.95522 0.97653 0.91169 0.89596 0.91320 0.87648 0.92040 0.91109 0.85485 0.89780 0.87587 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.61 13.29 21.45 0.28 -62.33 16 2 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 3 Si 0.98 47.22 29.54 68.60 2.03 49.25 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -33.56 8.32 25.60 0.21 -33.35 16 8 H 0.07 4.29 5.80 -2.91 -0.02 4.28 16 9 C 0.21 13.00 3.84 85.55 0.33 13.33 16 10 N -0.53 -25.31 4.75 -882.42 -4.19 -29.50 16 11 C 0.06 2.41 4.98 86.22 0.43 2.84 16 12 C -0.11 -3.12 6.06 30.69 0.19 -2.94 16 13 C -0.10 -2.26 5.45 30.65 0.17 -2.10 16 14 C -0.08 -1.93 2.04 -10.90 -0.02 -1.95 16 15 H 0.08 2.10 8.09 -2.39 -0.02 2.09 16 16 C -0.12 -1.91 5.59 31.16 0.17 -1.74 16 17 C 0.10 1.64 7.17 87.18 0.63 2.27 16 18 N -0.71 -19.78 5.44 -464.32 -2.53 -22.31 16 19 C 0.51 21.17 7.54 87.51 0.66 21.83 16 20 O -0.58 -32.11 13.90 -3.05 -0.04 -32.16 16 21 C 0.07 2.67 1.68 43.98 0.07 2.74 16 22 H 0.04 1.66 8.09 -2.39 -0.02 1.64 16 23 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 24 H -0.06 -4.03 8.04 -2.39 -0.02 -4.05 16 25 H 0.03 1.88 5.69 -2.38 -0.01 1.87 16 26 H 0.01 0.23 8.12 -2.38 -0.02 0.21 16 27 H 0.07 3.19 5.57 -2.39 -0.01 3.18 16 28 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 33 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.40 10.20 8.81 -92.70 -0.82 9.38 16 Total: -1.00 -85.62 278.00 -0.89 -86.52 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.26 Total: 9.50 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 3.30 Total: 1.02 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -6.43 Total: -114.14 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -0.04 Total: -32.16 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -85.62 -0.89 -86.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880532283.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.548 kcal (2) G-P(sol) polarization free energy of solvation -85.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds