Wall clock time and date at job start Sun Mar 29 2020 23:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47480 * 240.00295 * 3 2 1 5 5 H 1.48508 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47333 * 120.00077 * 3 2 1 7 7 C 1.37878 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21592 * 120.00049 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.46508 * 120.00030 * 179.97438 * 13 11 10 15 15 C 1.51872 * 108.55759 * 80.94795 * 14 13 11 16 16 C 1.53029 * 110.76080 * 187.50962 * 15 14 13 17 17 C 1.51376 * 108.61350 * 274.28983 * 16 15 14 18 18 C 1.29521 * 120.35897 * 71.92013 * 17 16 15 19 19 C 1.51368 * 120.36592 * 359.97438 * 18 17 16 20 20 C 1.51846 * 108.65224 * 205.00228 * 14 13 11 21 21 H 0.96998 * 120.00099 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46919 * 60.00284 * 9 7 2 23 23 H 1.08995 * 109.47121 * 300.00077 * 9 7 2 24 24 H 0.96998 * 119.99474 * 359.97438 * 10 9 7 25 25 H 0.96995 * 120.00568 * 0.02562 * 13 11 10 26 26 H 1.09003 * 108.60300 * 323.01967 * 14 13 11 27 27 H 1.09002 * 109.19818 * 67.18585 * 15 14 13 28 28 H 1.09003 * 109.23746 * 307.85451 * 15 14 13 29 29 H 1.08996 * 109.61401 * 154.54781 * 16 15 14 30 30 H 1.09007 * 109.61034 * 34.02360 * 16 15 14 31 31 H 1.07998 * 119.81373 * 251.89593 * 17 16 15 32 32 H 1.08006 * 119.81476 * 179.97438 * 18 17 16 33 33 H 1.09005 * 109.61186 * 47.83692 * 19 18 17 34 34 H 1.09003 * 109.61765 * 168.18474 * 19 18 17 35 35 H 1.09007 * 109.22116 * 52.20474 * 20 14 13 36 36 H 1.08998 * 109.21839 * 292.86391 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6296 -5.9077 -0.0016 14 6 2.1412 -7.2890 -0.0016 15 6 1.7660 -7.6690 -1.4233 16 6 1.0767 -9.0349 -1.4557 17 6 2.1394 -10.1108 -1.5244 18 6 2.8742 -10.3720 -0.4904 19 6 2.6803 -9.6045 0.7998 20 6 3.2090 -8.1816 0.6059 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 3.1566 -3.4354 -0.0009 25 1 3.5832 -5.7306 -0.0012 26 1 1.2475 -7.3419 0.6202 27 1 2.6680 -7.7076 -2.0340 28 1 1.0903 -6.9164 -1.8298 29 1 0.4335 -9.0994 -2.3333 30 1 0.4814 -9.1658 -0.5520 31 1 2.2852 -10.6638 -2.4406 32 1 3.6296 -11.1418 -0.5490 33 1 1.6197 -9.5699 1.0491 34 1 3.2292 -10.0952 1.6036 35 1 3.5091 -7.7755 1.5720 36 1 4.0744 -8.2074 -0.0562 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888907398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:27 Heat of formation + Delta-G solvation = -33.071385 kcal Electronic energy + Delta-G solvation = -16753.178300 eV Core-core repulsion = 14043.834437 eV Total energy + Delta-G solvation = -2709.343862 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.72511 -38.09528 -34.55083 -33.89271 -32.31014 -31.89664 -30.46752 -27.05588 -24.77594 -24.05934 -22.46619 -20.50504 -20.06912 -18.19252 -17.89123 -16.68668 -15.87645 -15.74262 -14.81848 -14.62477 -14.36199 -13.76231 -13.51854 -13.30771 -13.03425 -12.80692 -12.23769 -11.92741 -11.91471 -11.69874 -11.32013 -10.94750 -10.90647 -10.76649 -10.62466 -10.37174 -10.26922 -9.41725 -9.35194 -9.10412 -8.71799 -8.62001 -7.70848 -6.12349 -4.18868 2.18513 3.27706 3.31493 3.33290 3.44597 4.01593 4.35382 4.53770 4.77601 4.95427 5.05484 5.09475 5.12831 5.23561 5.32460 5.39948 5.46680 5.66576 5.72760 5.79308 5.88672 6.07638 6.11859 6.29275 6.38467 6.57722 6.80238 6.99236 7.18589 7.56533 7.60073 7.61339 7.96020 8.09322 8.80379 9.00635 9.38679 9.53126 10.97917 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062414 B = 0.004174 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.506656 B = 6705.799037 C = 6885.057855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.731 5.731 11 C 0.692 3.308 12 O -0.601 6.601 13 N -0.757 5.757 14 C 0.167 3.833 15 C -0.123 4.123 16 C -0.090 4.090 17 C -0.152 4.152 18 C -0.164 4.164 19 C -0.087 4.087 20 C -0.120 4.120 21 H 0.266 0.734 22 H 0.024 0.976 23 H 0.024 0.976 24 H 0.385 0.615 25 H 0.389 0.611 26 H 0.079 0.921 27 H 0.060 0.940 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.016 -18.160 -0.700 19.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.392 3.608 12 O -0.480 6.480 13 N -0.414 5.414 14 C 0.062 3.938 15 C -0.162 4.162 16 C -0.128 4.128 17 C -0.170 4.170 18 C -0.182 4.182 19 C -0.125 4.125 20 C -0.158 4.158 21 H 0.076 0.924 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.217 0.783 25 H 0.222 0.778 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.695 -18.158 -0.690 19.366 hybrid contribution 1.404 1.065 -0.118 1.766 sum 8.099 -17.093 -0.808 18.932 Atomic orbital electron populations 1.69968 1.06088 1.27340 1.48938 1.24941 0.94907 0.99366 0.94794 0.86477 0.79400 0.82370 0.78639 1.20106 1.21084 1.20111 1.21203 0.93221 0.90506 1.53133 0.92034 1.18957 0.87799 0.81098 0.97541 1.45724 1.10704 1.04517 1.77350 1.16181 0.85300 0.81066 0.78250 1.90861 1.14237 1.84234 1.58709 1.45381 1.08678 1.05125 1.82169 1.20374 0.97319 0.79851 0.96268 1.21708 1.00908 0.96360 0.97196 1.20775 0.96464 0.92960 1.02594 1.22624 0.97758 0.98351 0.98285 1.22516 1.00081 1.00118 0.95492 1.20722 1.01964 0.94125 0.95708 1.21548 0.98441 0.94421 1.01352 0.92430 0.95804 0.95808 0.78253 0.77804 0.90269 0.92114 0.90642 0.91374 0.90817 0.87724 0.87717 0.90714 0.91229 0.91052 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 9 C 0.27 7.29 5.43 -5.19 -0.03 7.26 16 10 N -0.73 -15.99 5.55 -66.41 -0.37 -16.36 16 11 C 0.69 14.57 8.32 -86.93 -0.72 13.85 16 12 O -0.60 -15.20 15.66 5.28 0.08 -15.12 16 13 N -0.76 -11.60 5.03 -59.81 -0.30 -11.90 16 14 C 0.17 2.25 1.97 -69.09 -0.14 2.11 16 15 C -0.12 -1.62 5.14 -27.29 -0.14 -1.76 16 16 C -0.09 -0.99 5.62 -27.54 -0.15 -1.14 16 17 C -0.15 -1.44 9.34 -35.28 -0.33 -1.77 16 18 C -0.16 -1.45 9.34 -35.29 -0.33 -1.78 16 19 C -0.09 -0.78 5.62 -27.54 -0.15 -0.94 16 20 C -0.12 -1.20 5.06 -27.30 -0.14 -1.34 16 21 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.39 7.22 8.34 -40.82 -0.34 6.88 16 25 H 0.39 4.81 8.58 -40.82 -0.35 4.46 16 26 H 0.08 1.25 7.34 -51.93 -0.38 0.87 16 27 H 0.06 0.75 7.86 -51.93 -0.41 0.34 16 28 H 0.07 1.23 7.62 -51.93 -0.40 0.83 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.82 6.68 -51.93 -0.35 0.48 16 31 H 0.10 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.10 0.79 8.06 -52.48 -0.42 0.36 16 33 H 0.07 0.71 6.68 -51.93 -0.35 0.36 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 36 H 0.07 0.63 7.86 -51.93 -0.41 0.22 16 LS Contribution 294.66 15.07 4.44 4.44 Total: -1.00 -32.43 294.66 -8.45 -40.88 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -5.47 Total: 6.84 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -2.55 Total: 0.90 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.07 Total: -53.98 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.08 Total: -15.12 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.43 -8.45 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888907398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.813 kcal (2) G-P(sol) polarization free energy of solvation -32.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds