Wall clock time and date at job start Sun Mar 29 2020 23:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 120.00232 * 2 1 4 4 H 1.48505 * 109.47480 * 240.00295 * 3 2 1 5 5 H 1.48508 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47333 * 120.00077 * 3 2 1 7 7 C 1.37878 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00190 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99993 * 180.02562 * 10 9 7 12 12 O 1.21592 * 120.00049 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.46508 * 120.00030 * 179.97438 * 13 11 10 15 15 C 1.51872 * 108.55759 * 80.94795 * 14 13 11 16 16 C 1.53029 * 110.76080 * 187.50962 * 15 14 13 17 17 C 1.51376 * 108.61350 * 274.28983 * 16 15 14 18 18 C 1.29521 * 120.35897 * 71.92013 * 17 16 15 19 19 C 1.51368 * 120.36592 * 359.97438 * 18 17 16 20 20 C 1.51846 * 108.65224 * 205.00228 * 14 13 11 21 21 H 0.96998 * 120.00099 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46919 * 60.00284 * 9 7 2 23 23 H 1.08995 * 109.47121 * 300.00077 * 9 7 2 24 24 H 0.96998 * 119.99474 * 359.97438 * 10 9 7 25 25 H 0.96995 * 120.00568 * 0.02562 * 13 11 10 26 26 H 1.09003 * 108.60300 * 323.01967 * 14 13 11 27 27 H 1.09002 * 109.19818 * 67.18585 * 15 14 13 28 28 H 1.09003 * 109.23746 * 307.85451 * 15 14 13 29 29 H 1.08996 * 109.61401 * 154.54781 * 16 15 14 30 30 H 1.09007 * 109.61034 * 34.02360 * 16 15 14 31 31 H 1.07998 * 119.81373 * 251.89593 * 17 16 15 32 32 H 1.08006 * 119.81476 * 179.97438 * 18 17 16 33 33 H 1.09005 * 109.61186 * 47.83692 * 19 18 17 34 34 H 1.09003 * 109.61765 * 168.18474 * 19 18 17 35 35 H 1.09007 * 109.22116 * 52.20474 * 20 14 13 36 36 H 1.08998 * 109.21839 * 292.86391 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8833 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6296 -5.9077 -0.0016 14 6 2.1412 -7.2890 -0.0016 15 6 1.7660 -7.6690 -1.4233 16 6 1.0767 -9.0349 -1.4557 17 6 2.1394 -10.1108 -1.5244 18 6 2.8742 -10.3720 -0.4904 19 6 2.6803 -9.6045 0.7998 20 6 3.2090 -8.1816 0.6059 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 3.1566 -3.4354 -0.0009 25 1 3.5832 -5.7306 -0.0012 26 1 1.2475 -7.3419 0.6202 27 1 2.6680 -7.7076 -2.0340 28 1 1.0903 -6.9164 -1.8298 29 1 0.4335 -9.0994 -2.3333 30 1 0.4814 -9.1658 -0.5520 31 1 2.2852 -10.6638 -2.4406 32 1 3.6296 -11.1418 -0.5490 33 1 1.6197 -9.5699 1.0491 34 1 3.2292 -10.0952 1.6036 35 1 3.5091 -7.7755 1.5720 36 1 4.0744 -8.2074 -0.0562 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888907398.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:01:26 Heat of formation + Delta-G solvation = -56.070589 kcal Electronic energy + Delta-G solvation = -16754.175620 eV Core-core repulsion = 14043.834437 eV Total energy + Delta-G solvation = -2710.341183 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.18438 -39.32035 -36.21241 -35.53167 -34.33775 -32.76287 -31.71455 -29.04311 -25.93082 -24.95689 -24.41373 -21.83444 -21.57834 -19.77074 -18.81957 -18.08696 -17.67866 -16.91861 -16.58538 -16.29980 -15.60117 -15.17254 -14.93281 -14.70959 -14.07891 -13.97658 -13.89506 -13.81656 -13.22238 -12.90143 -12.69085 -12.64414 -12.22540 -12.10898 -11.86362 -11.58556 -11.48992 -11.25309 -11.17239 -10.78540 -10.23569 -9.92118 -9.57053 -8.27651 -6.44507 1.43706 1.47010 1.48463 1.56463 1.91136 2.27367 2.40485 3.07105 3.54107 3.65332 3.91816 4.09756 4.18418 4.27322 4.41710 4.50186 4.59369 4.67909 4.86268 4.92421 5.04828 5.10109 5.19157 5.24433 5.27483 5.28820 5.38522 5.50220 5.63983 5.71013 5.83881 5.85969 6.09295 6.30293 6.67289 7.25105 7.34848 7.75683 8.84633 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.062414 B = 0.004174 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.506656 B = 6705.799037 C = 6885.057855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.262 1.262 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.286 3.714 10 N -0.725 5.725 11 C 0.690 3.310 12 O -0.649 6.649 13 N -0.733 5.733 14 C 0.166 3.834 15 C -0.118 4.118 16 C -0.088 4.088 17 C -0.162 4.162 18 C -0.155 4.155 19 C -0.089 4.089 20 C -0.110 4.110 21 H 0.269 0.731 22 H -0.016 1.016 23 H -0.016 1.016 24 H 0.404 0.596 25 H 0.409 0.591 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.115 -18.908 -0.579 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.378 5.378 11 C 0.390 3.610 12 O -0.531 6.531 13 N -0.389 5.389 14 C 0.061 3.939 15 C -0.157 4.157 16 C -0.126 4.126 17 C -0.180 4.180 18 C -0.173 4.173 19 C -0.127 4.127 20 C -0.148 4.148 21 H 0.078 0.922 22 H 0.002 0.998 23 H 0.002 0.998 24 H 0.239 0.761 25 H 0.245 0.755 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.098 0.902 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.877 -18.965 -0.568 21.390 hybrid contribution 0.397 1.204 -0.146 1.276 sum 10.273 -17.761 -0.715 20.531 Atomic orbital electron populations 1.70140 1.08321 1.28650 1.49885 1.26081 0.95783 1.03915 0.93813 0.85177 0.77873 0.76456 0.79497 1.18648 1.21057 1.18613 1.21581 0.94314 0.90485 1.53056 0.89813 1.18388 0.88128 0.83432 0.93814 1.45313 1.10834 1.03890 1.77795 1.16366 0.85245 0.81626 0.77798 1.90830 1.16767 1.84933 1.60598 1.45198 1.08950 1.04627 1.80141 1.20609 0.97799 0.79156 0.96326 1.21625 1.00660 0.96585 0.96807 1.20714 0.97070 0.92433 1.02394 1.22615 0.97564 0.98310 0.99502 1.22719 0.99867 0.99937 0.94753 1.20768 1.01701 0.93486 0.96761 1.21495 0.97389 0.94188 1.01696 0.92224 0.99844 0.99779 0.76062 0.75480 0.93074 0.90800 0.94728 0.91217 0.91548 0.86230 0.85498 0.91774 0.88968 0.90243 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.80 16 2 C 0.00 0.20 5.46 84.66 0.46 0.67 16 3 Si 0.99 42.69 29.54 68.60 2.03 44.71 16 4 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.56 -30.89 9.28 25.60 0.24 -30.66 16 8 H 0.08 4.18 7.60 -2.91 -0.02 4.15 16 9 C 0.29 16.29 5.43 85.63 0.46 16.75 16 10 N -0.72 -32.28 5.55 -482.29 -2.68 -34.96 16 11 C 0.69 29.85 8.32 179.06 1.49 31.34 16 12 O -0.65 -34.66 15.66 -4.00 -0.06 -34.73 16 13 N -0.73 -22.07 5.03 -461.42 -2.32 -24.39 16 14 C 0.17 4.40 1.97 44.24 0.09 4.49 16 15 C -0.12 -3.12 5.14 30.23 0.16 -2.96 16 16 C -0.09 -1.92 5.62 30.07 0.17 -1.75 16 17 C -0.16 -2.70 9.34 27.37 0.26 -2.45 16 18 C -0.15 -2.24 9.34 27.37 0.26 -1.98 16 19 C -0.09 -1.36 5.62 30.07 0.17 -1.19 16 20 C -0.11 -1.93 5.06 30.22 0.15 -1.77 16 21 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 22 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 23 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 24 H 0.40 14.78 8.34 -92.71 -0.77 14.00 16 25 H 0.41 9.25 8.58 -92.71 -0.80 8.46 16 26 H 0.05 1.67 7.34 -2.39 -0.02 1.65 16 27 H 0.07 1.73 7.86 -2.39 -0.02 1.72 16 28 H 0.03 1.19 7.62 -2.39 -0.02 1.17 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.07 1.52 6.68 -2.38 -0.02 1.50 16 31 H 0.12 1.66 8.06 -2.91 -0.02 1.63 16 32 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 33 H 0.06 1.14 6.68 -2.38 -0.02 1.12 16 34 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.08 1.25 7.86 -2.39 -0.02 1.23 16 Total: -1.00 -73.59 294.66 0.66 -72.93 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -0.49 Total: 22.75 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 3.90 Total: 10.48 kcal Atomic # 7 Polarization: -111.44 SS G_CDS: -4.72 Total: -116.15 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.06 Total: -34.73 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.71 kcal Total: -73.59 0.66 -72.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888907398.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.864 kcal (2) G-P(sol) polarization free energy of solvation -73.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds