Wall clock time and date at job start Sun Mar 29 2020 22:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47377 * 2 1 4 4 C 1.36933 * 120.00302 * 275.64889 * 3 2 1 5 5 H 1.08001 * 119.99881 * 33.98339 * 4 3 2 6 6 C 1.38809 * 120.00080 * 213.98441 * 4 3 2 7 7 N 1.31615 * 120.00153 * 22.95469 * 6 4 3 8 8 Si 1.86802 * 119.99707 * 202.95559 * 6 4 3 9 9 H 1.48492 * 109.47528 * 59.99963 * 8 6 4 10 10 H 1.48507 * 109.47029 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46948 * 299.99514 * 8 6 4 12 12 C 1.46499 * 119.99549 * 95.64772 * 3 2 1 13 13 C 1.50702 * 109.47275 * 269.99849 * 12 3 2 14 14 C 1.38154 * 120.38669 * 90.00186 * 13 12 3 15 15 N 1.31900 * 120.79503 * 179.72566 * 14 13 12 16 16 C 1.32063 * 121.69248 * 0.02562 * 15 14 13 17 17 F 1.35094 * 119.65019 * 180.02562 * 16 15 14 18 18 C 1.38521 * 120.69720 * 0.02562 * 16 15 14 19 19 C 1.50698 * 120.42855 * 179.97438 * 18 16 15 20 20 C 1.38541 * 119.14009 * 359.97438 * 18 16 15 21 21 H 1.09007 * 109.47017 * 300.00008 * 1 2 3 22 22 H 1.08997 * 109.47471 * 59.99170 * 1 2 3 23 23 H 1.08993 * 109.47535 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46957 * 240.00657 * 2 1 3 25 25 H 1.09003 * 109.47150 * 120.00185 * 2 1 3 26 26 H 0.96999 * 120.00202 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46999 * 150.00479 * 12 3 2 28 28 H 1.09001 * 109.47876 * 30.00137 * 12 3 2 29 29 H 1.08001 * 119.60039 * 359.75169 * 14 13 12 30 30 H 1.09008 * 109.47363 * 89.99345 * 19 18 16 31 31 H 1.08998 * 109.47451 * 209.99599 * 19 18 16 32 32 H 1.09004 * 109.47364 * 329.99688 * 19 18 16 33 33 H 1.07999 * 120.77574 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1366 2.0657 -1.1801 5 1 1.4328 1.8886 -1.9799 6 6 3.1610 2.9872 -1.3483 7 7 4.2517 2.8995 -0.6171 8 14 2.9913 4.3518 -2.6127 9 1 1.8081 5.1867 -2.2842 10 1 4.2131 5.1958 -2.5971 11 1 2.8183 3.7572 -3.9624 12 6 2.3802 2.0301 1.2626 13 6 1.1713 2.7240 1.8354 14 6 0.3219 2.0532 2.6939 15 7 -0.7355 2.6543 3.2042 16 6 -1.0246 3.9108 2.9183 17 9 -2.1180 4.4860 3.4647 18 6 -0.2184 4.6452 2.0641 19 6 -0.5543 6.0784 1.7416 20 6 0.9006 4.0449 1.5101 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.9674 3.5436 -0.7344 27 1 3.1677 2.7619 1.0824 28 1 2.7365 1.2794 1.9681 29 1 0.5264 1.0243 2.9507 30 1 -0.0716 6.7363 2.4644 31 1 -0.1999 6.3179 0.7390 32 1 -1.6344 6.2179 1.7881 33 1 1.5476 4.5930 0.8412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891778258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:19 Heat of formation + Delta-G solvation = 2.840496 kcal Electronic energy + Delta-G solvation = -17228.558301 eV Core-core repulsion = 14397.311390 eV Total energy + Delta-G solvation = -2831.246911 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.58190 -39.65029 -36.10752 -33.37628 -32.01205 -31.77770 -28.80487 -27.05913 -25.78597 -23.69445 -22.83872 -21.12018 -20.12781 -17.56089 -17.03958 -16.64513 -15.69996 -15.09148 -14.18368 -14.00522 -13.84819 -13.78183 -13.32265 -13.15823 -12.62548 -12.55023 -12.42770 -12.23519 -11.99325 -11.60753 -11.28423 -10.89876 -10.83876 -10.61931 -10.29298 -10.10187 -9.96564 -9.15798 -9.13779 -8.63461 -8.13931 -6.78120 -5.95032 -3.47459 1.42566 1.69608 3.26527 3.33936 3.36114 4.05370 4.08972 4.37252 4.94316 5.11509 5.18235 5.31811 5.48031 5.54907 5.73892 5.82250 5.93059 5.97366 6.10793 6.27519 6.31028 6.42148 6.48099 6.55815 6.56226 6.82415 6.96557 7.08270 7.19096 7.47271 7.69083 8.13227 8.34333 9.01844 9.65186 10.21205 11.05004 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.009882 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.742717 B = 2832.835130 C = 3636.438039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.575 5.575 4 C -0.254 4.254 5 H 0.062 0.938 6 C 0.010 3.990 7 N -0.883 5.883 8 Si 0.892 3.108 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.280 1.280 12 C 0.172 3.828 13 C -0.121 4.121 14 C 0.118 3.882 15 N -0.516 5.516 16 C 0.269 3.731 17 F -0.126 7.126 18 C -0.161 4.161 19 C -0.106 4.106 20 C -0.037 4.037 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.038 0.962 24 H 0.047 0.953 25 H 0.038 0.962 26 H 0.258 0.742 27 H 0.113 0.887 28 H 0.041 0.959 29 H 0.156 0.844 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 1.887 4.527 7.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.294 5.294 4 C -0.383 4.383 5 H 0.080 0.920 6 C -0.190 4.190 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.206 1.206 12 C 0.045 3.955 13 C -0.126 4.126 14 C -0.039 4.039 15 N -0.230 5.230 16 C 0.115 3.885 17 F -0.105 7.105 18 C -0.164 4.164 19 C -0.164 4.164 20 C -0.063 4.063 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.130 0.870 28 H 0.059 0.941 29 H 0.173 0.827 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.610 1.512 5.066 7.709 hybrid contribution 0.031 1.280 -1.124 1.704 sum -5.579 2.792 3.942 7.380 Atomic orbital electron populations 1.22385 0.99893 0.99217 1.01477 1.20896 0.91754 0.86701 0.99154 1.43791 1.75458 1.08170 1.01962 1.19017 1.07581 1.18806 0.92933 0.92019 1.25065 0.94129 1.01436 0.98381 1.69954 1.04503 1.35835 1.42198 0.86533 0.77173 0.82439 0.81782 1.20738 1.21410 1.20554 1.20103 0.92076 0.97277 0.85998 1.22353 1.01435 0.94265 0.94591 1.22295 0.88646 0.99129 0.93825 1.66868 1.20500 1.09271 1.26331 1.17819 0.85794 0.89246 0.95616 1.91519 1.51544 1.82936 1.84535 1.20600 0.97301 0.98296 1.00219 1.20642 1.02068 0.91283 1.02365 1.21368 0.94430 0.94582 0.95960 0.93517 0.93326 0.94331 0.93435 0.94386 0.93207 0.86989 0.94070 0.82726 0.91077 0.90886 0.91442 0.84176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 10.20 37.16 0.38 -2.69 16 2 C 0.14 2.79 6.44 -4.04 -0.03 2.77 16 3 N -0.58 -13.19 2.44 -174.61 -0.43 -13.62 16 4 C -0.25 -6.44 9.48 -15.06 -0.14 -6.59 16 5 H 0.06 1.60 7.93 -52.49 -0.42 1.18 16 6 C 0.01 0.26 4.95 -17.43 -0.09 0.17 16 7 N -0.88 -23.34 11.31 55.49 0.63 -22.71 16 8 Si 0.89 20.14 29.61 -169.99 -5.03 15.11 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 C 0.17 3.68 5.48 -5.19 -0.03 3.65 16 13 C -0.12 -2.35 5.46 -104.48 -0.57 -2.92 16 14 C 0.12 2.16 9.05 -17.55 -0.16 2.00 16 15 N -0.52 -9.86 10.37 -13.59 -0.14 -10.01 16 16 C 0.27 4.97 8.36 -17.35 -0.15 4.83 16 17 F -0.13 -2.21 16.51 2.25 0.04 -2.17 16 18 C -0.16 -2.81 5.90 -104.41 -0.62 -3.42 16 19 C -0.11 -1.49 9.86 36.00 0.35 -1.13 16 20 C -0.04 -0.70 9.54 -39.30 -0.37 -1.08 16 21 H 0.05 0.86 6.14 -51.92 -0.32 0.54 16 22 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 25 H 0.04 0.69 7.83 -51.93 -0.41 0.28 16 26 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 27 H 0.11 2.69 5.26 -51.93 -0.27 2.42 16 28 H 0.04 0.82 7.81 -51.93 -0.41 0.41 16 29 H 0.16 2.49 8.01 -52.49 -0.42 2.07 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.07 0.88 7.66 -51.93 -0.40 0.48 16 33 H 0.14 2.74 8.06 -52.49 -0.42 2.32 16 LS Contribution 283.92 15.07 4.28 4.28 Total: -1.00 -26.91 283.92 -6.38 -33.28 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.30 Total: 0.25 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -1.42 Total: -4.41 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.06 Total: -46.34 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.91 -6.38 -33.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891778258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.123 kcal (2) G-P(sol) polarization free energy of solvation -26.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds