Wall clock time and date at job start Sun Mar 29 2020 22:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46505 * 109.47377 * 2 1 4 4 C 1.36933 * 120.00302 * 275.64889 * 3 2 1 5 5 H 1.08001 * 119.99881 * 33.98339 * 4 3 2 6 6 C 1.38809 * 120.00080 * 213.98441 * 4 3 2 7 7 N 1.31615 * 120.00153 * 22.95469 * 6 4 3 8 8 Si 1.86802 * 119.99707 * 202.95559 * 6 4 3 9 9 H 1.48492 * 109.47528 * 59.99963 * 8 6 4 10 10 H 1.48507 * 109.47029 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.46948 * 299.99514 * 8 6 4 12 12 C 1.46499 * 119.99549 * 95.64772 * 3 2 1 13 13 C 1.50702 * 109.47275 * 269.99849 * 12 3 2 14 14 C 1.38154 * 120.38669 * 90.00186 * 13 12 3 15 15 N 1.31900 * 120.79503 * 179.72566 * 14 13 12 16 16 C 1.32063 * 121.69248 * 0.02562 * 15 14 13 17 17 F 1.35094 * 119.65019 * 180.02562 * 16 15 14 18 18 C 1.38521 * 120.69720 * 0.02562 * 16 15 14 19 19 C 1.50698 * 120.42855 * 179.97438 * 18 16 15 20 20 C 1.38541 * 119.14009 * 359.97438 * 18 16 15 21 21 H 1.09007 * 109.47017 * 300.00008 * 1 2 3 22 22 H 1.08997 * 109.47471 * 59.99170 * 1 2 3 23 23 H 1.08993 * 109.47535 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46957 * 240.00657 * 2 1 3 25 25 H 1.09003 * 109.47150 * 120.00185 * 2 1 3 26 26 H 0.96999 * 120.00202 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46999 * 150.00479 * 12 3 2 28 28 H 1.09001 * 109.47876 * 30.00137 * 12 3 2 29 29 H 1.08001 * 119.60039 * 359.75169 * 14 13 12 30 30 H 1.09008 * 109.47363 * 89.99345 * 19 18 16 31 31 H 1.08998 * 109.47451 * 209.99599 * 19 18 16 32 32 H 1.09004 * 109.47364 * 329.99688 * 19 18 16 33 33 H 1.07999 * 120.77574 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1366 2.0657 -1.1801 5 1 1.4328 1.8886 -1.9799 6 6 3.1610 2.9872 -1.3483 7 7 4.2517 2.8995 -0.6171 8 14 2.9913 4.3518 -2.6127 9 1 1.8081 5.1867 -2.2842 10 1 4.2131 5.1958 -2.5971 11 1 2.8183 3.7572 -3.9624 12 6 2.3802 2.0301 1.2626 13 6 1.1713 2.7240 1.8354 14 6 0.3219 2.0532 2.6939 15 7 -0.7355 2.6543 3.2042 16 6 -1.0246 3.9108 2.9183 17 9 -2.1180 4.4860 3.4647 18 6 -0.2184 4.6452 2.0641 19 6 -0.5543 6.0784 1.7416 20 6 0.9006 4.0449 1.5101 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.9674 3.5436 -0.7344 27 1 3.1677 2.7619 1.0824 28 1 2.7365 1.2794 1.9681 29 1 0.5264 1.0243 2.9507 30 1 -0.0716 6.7363 2.4644 31 1 -0.1999 6.3179 0.7390 32 1 -1.6344 6.2179 1.7881 33 1 1.5476 4.5930 0.8412 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891778258.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:06:19 Heat of formation + Delta-G solvation = -10.957102 kcal Electronic energy + Delta-G solvation = -17229.156610 eV Core-core repulsion = 14397.311390 eV Total energy + Delta-G solvation = -2831.845220 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.99419 -41.11857 -37.80351 -34.74645 -33.85088 -33.28466 -30.45294 -28.35764 -27.51232 -25.37587 -24.28673 -22.63381 -21.77256 -18.99426 -18.72270 -18.23912 -17.12320 -16.88696 -15.80491 -15.61520 -15.48927 -15.27340 -14.71834 -14.43783 -14.14677 -14.01396 -13.92206 -13.60658 -13.31615 -13.13632 -13.09733 -12.60083 -12.39977 -12.33079 -12.11146 -11.81733 -11.55692 -10.66291 -10.60890 -10.48671 -9.59189 -8.62295 -7.84679 -5.41294 -0.00712 0.21154 1.46084 1.50098 1.55547 2.49233 2.62530 2.65524 3.22405 3.56777 3.80874 3.82533 3.94256 4.09260 4.39567 4.44804 4.58963 4.68805 4.75875 4.82920 4.86482 4.94225 5.06284 5.08920 5.14012 5.28217 5.42882 5.56328 5.67296 5.72426 5.78144 6.45455 6.67439 7.14912 7.84090 8.34985 9.11611 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.021554 B = 0.009882 C = 0.007698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.742717 B = 2832.835130 C = 3636.438039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.261 4.261 5 H 0.050 0.950 6 C -0.026 4.026 7 N -0.908 5.908 8 Si 0.941 3.059 9 H -0.275 1.275 10 H -0.290 1.290 11 H -0.282 1.282 12 C 0.178 3.822 13 C -0.127 4.127 14 C 0.124 3.876 15 N -0.528 5.528 16 C 0.262 3.738 17 F -0.120 7.120 18 C -0.154 4.154 19 C -0.106 4.106 20 C -0.049 4.049 21 H 0.043 0.957 22 H 0.028 0.972 23 H 0.067 0.933 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.255 0.745 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.177 0.823 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.315 2.125 5.050 8.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.011 3.989 3 N -0.310 5.310 4 C -0.392 4.392 5 H 0.068 0.932 6 C -0.224 4.224 7 N -0.551 5.551 8 Si 0.770 3.230 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.208 1.208 12 C 0.051 3.949 13 C -0.132 4.132 14 C -0.033 4.033 15 N -0.241 5.241 16 C 0.109 3.891 17 F -0.099 7.099 18 C -0.157 4.157 19 C -0.163 4.163 20 C -0.075 4.075 21 H 0.062 0.938 22 H 0.048 0.952 23 H 0.086 0.914 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.103 0.897 28 H 0.071 0.929 29 H 0.194 0.806 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.730 1.748 5.602 8.929 hybrid contribution 0.333 1.178 -1.232 1.737 sum -6.397 2.927 4.370 8.282 Atomic orbital electron populations 1.22218 0.98281 1.00740 1.00317 1.21016 0.92896 0.85360 0.99579 1.43971 1.75844 1.09392 1.01769 1.19085 1.07099 1.19273 0.93705 0.93227 1.25553 0.93922 1.02911 0.99979 1.70052 1.05006 1.36402 1.43682 0.85755 0.76992 0.80398 0.79893 1.20137 1.21631 1.20762 1.19916 0.92154 0.96992 0.85799 1.22160 1.00962 0.94629 0.95498 1.22494 0.87928 0.99817 0.93026 1.66913 1.20788 1.09764 1.26663 1.18004 0.86044 0.89310 0.95756 1.91533 1.51203 1.82797 1.84411 1.20835 0.96101 0.99811 0.98987 1.20742 1.03115 0.89265 1.03158 1.21383 0.95105 0.94725 0.96318 0.93770 0.95249 0.91430 0.94535 0.92393 0.93583 0.89666 0.92854 0.80632 0.89059 0.90485 0.90205 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.36 10.20 71.98 0.73 -4.63 16 2 C 0.14 5.26 6.44 86.38 0.56 5.82 16 3 N -0.59 -26.90 2.44 -706.34 -1.73 -28.63 16 4 C -0.26 -13.34 9.48 84.03 0.80 -12.54 16 5 H 0.05 2.61 7.93 -2.91 -0.02 2.58 16 6 C -0.03 -1.31 4.95 84.86 0.42 -0.89 16 7 N -0.91 -48.57 11.31 21.65 0.24 -48.33 16 8 Si 0.94 41.51 29.61 68.60 2.03 43.54 16 9 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 10 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.18 7.55 5.48 85.63 0.47 8.02 16 13 C -0.13 -4.84 5.46 -19.77 -0.11 -4.95 16 14 C 0.12 4.31 9.05 84.66 0.77 5.08 16 15 N -0.53 -19.13 10.37 -196.92 -2.04 -21.17 16 16 C 0.26 9.17 8.36 84.73 0.71 9.88 16 17 F -0.12 -3.93 16.51 44.97 0.74 -3.19 16 18 C -0.15 -5.10 5.90 -19.73 -0.12 -5.22 16 19 C -0.11 -2.69 9.86 71.24 0.70 -1.99 16 20 C -0.05 -1.82 9.54 22.45 0.21 -1.61 16 21 H 0.04 1.52 6.14 -2.38 -0.01 1.51 16 22 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 1.46 8.09 -2.39 -0.02 1.44 16 25 H 0.06 1.98 7.83 -2.39 -0.02 1.96 16 26 H 0.25 13.26 8.31 -92.71 -0.77 12.49 16 27 H 0.09 4.16 5.26 -2.39 -0.01 4.14 16 28 H 0.05 2.07 7.81 -2.39 -0.02 2.05 16 29 H 0.18 5.22 8.01 -2.91 -0.02 5.20 16 30 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 31 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 32 H 0.08 1.85 7.66 -2.39 -0.02 1.83 16 33 H 0.13 5.10 8.06 -2.91 -0.02 5.08 16 Total: -1.00 -56.06 283.92 5.49 -50.57 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 1.10 Total: 10.25 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 5.14 Total: -3.04 kcal Atomic # 7 Polarization: -94.60 SS G_CDS: -3.52 Total: -98.13 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.74 Total: -3.19 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -56.06 5.49 -50.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891778258.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.613 kcal (2) G-P(sol) polarization free energy of solvation -56.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds