Wall clock time and date at job start Sun Mar 29 2020 22:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99997 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99798 * 3 2 1 5 5 H 1.48495 * 109.46988 * 29.99778 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99415 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47248 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99804 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00053 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 179.97438 * 14 13 11 16 16 H 1.08992 * 115.56284 * 29.34058 * 15 14 13 17 17 C 1.53126 * 117.51192 * 243.60471 * 15 14 13 18 18 C 1.52455 * 59.85538 * 252.55491 * 17 15 14 19 19 C 1.53259 * 128.58765 * 117.60640 * 18 17 15 20 20 C 1.53882 * 86.88654 * 114.93815 * 19 18 17 21 21 C 1.53261 * 128.58256 * 242.39701 * 18 17 15 22 22 H 0.96999 * 119.99519 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47403 * 59.99366 * 9 7 2 24 24 H 1.09004 * 109.46639 * 299.99509 * 9 7 2 25 25 H 1.09008 * 109.46866 * 59.99299 * 10 9 7 26 26 H 1.09001 * 109.47046 * 300.00182 * 10 9 7 27 27 H 1.09002 * 109.47379 * 59.99613 * 14 13 11 28 28 H 1.09001 * 109.46782 * 299.99696 * 14 13 11 29 29 H 1.09007 * 117.50826 * 0.02562 * 17 15 14 30 30 H 1.08997 * 117.51629 * 145.09978 * 17 15 14 31 31 H 1.09001 * 113.64734 * 229.43775 * 19 18 17 32 32 H 1.08999 * 113.64501 * 0.44113 * 19 18 17 33 33 H 1.09003 * 113.59097 * 270.39184 * 20 19 18 34 34 H 1.09006 * 113.59093 * 139.57183 * 20 19 18 35 35 H 1.09003 * 113.64502 * 359.55661 * 21 18 17 36 36 H 1.09003 * 113.64526 * 130.55831 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2835 -4.9671 0.0011 13 8 2.1628 -6.1297 0.0018 14 6 1.3720 -7.3474 0.0018 15 6 2.3040 -8.5607 0.0019 16 1 3.2702 -8.4116 0.4838 17 6 2.2562 -9.4895 -1.2146 18 6 1.6645 -9.9400 0.1163 19 6 0.2102 -10.2950 0.4446 20 6 0.7061 -11.7292 0.7001 21 6 2.0867 -11.1190 0.9999 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5566 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.7435 -7.3725 -0.8884 28 1 0.7428 -7.3719 0.8916 29 1 1.5610 -9.2356 -2.0148 30 1 3.1908 -9.9516 -1.5324 31 1 -0.1703 -9.7985 1.3373 32 1 -0.4635 -10.2109 -0.4081 33 1 0.6919 -12.3605 -0.1884 34 1 0.2420 -12.2038 1.5647 35 1 2.9173 -11.6953 0.5923 36 1 2.2285 -10.8517 2.0471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893467217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:05 Heat of formation + Delta-G solvation = -59.391707 kcal Electronic energy + Delta-G solvation = -16168.602069 eV Core-core repulsion = 13425.824121 eV Total energy + Delta-G solvation = -2742.777948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.15248 -39.47964 -36.17974 -34.10978 -33.56239 -31.13717 -27.78399 -25.99546 -25.56225 -23.31222 -22.18234 -20.96597 -19.77483 -18.38511 -17.31753 -16.41937 -16.14470 -15.58330 -15.49965 -15.27959 -14.47173 -14.33766 -13.77315 -12.75062 -12.64797 -12.43451 -12.23886 -12.10495 -11.79425 -11.63890 -11.44429 -11.14183 -10.95530 -10.63884 -10.58182 -10.48427 -10.12114 -10.03636 -9.88349 -9.71743 -9.46454 -9.16267 -8.36783 -6.00627 -4.05455 2.86369 3.01975 3.32310 3.38410 3.41442 3.52676 4.14748 4.35256 4.45025 4.52139 4.54069 4.69152 5.11167 5.14677 5.29188 5.34718 5.43276 5.45081 5.49602 5.56295 5.59597 5.63715 5.67765 5.78932 6.02830 6.07411 6.10129 6.14671 6.23329 6.69085 6.98317 7.67723 7.74929 7.99241 8.27896 8.44523 9.01760 9.58502 11.10420 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.074011 B = 0.003495 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.229251 B = 8008.732479 C = 8204.180007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.033 3.967 10 C -0.103 4.103 11 C 0.456 3.544 12 O -0.507 6.507 13 O -0.365 6.365 14 C 0.098 3.902 15 C -0.137 4.137 16 H 0.117 0.883 17 C -0.144 4.144 18 C -0.151 4.151 19 C -0.105 4.105 20 C -0.136 4.136 21 C -0.100 4.100 22 H 0.262 0.738 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.439 -21.611 0.383 22.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.141 4.141 11 C 0.300 3.700 12 O -0.394 6.394 13 O -0.283 6.283 14 C 0.024 3.976 15 C -0.155 4.155 16 H 0.135 0.865 17 C -0.180 4.180 18 C -0.151 4.151 19 C -0.142 4.142 20 C -0.174 4.174 21 C -0.137 4.137 22 H 0.071 0.929 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.894 -21.527 0.389 21.880 hybrid contribution 0.295 0.892 -0.048 0.940 sum 4.188 -20.636 0.341 21.059 Atomic orbital electron populations 1.70000 1.06095 1.26739 1.49982 1.25030 0.94863 0.99343 0.95140 0.86536 0.79763 0.83219 0.78124 1.20606 1.21192 1.19783 1.21163 0.93081 0.90656 1.51734 0.92298 1.19020 0.93246 0.89302 0.98884 1.21759 1.00653 0.87682 1.03985 1.24763 0.87923 0.85703 0.71615 1.90629 1.15945 1.87747 1.45082 1.86541 1.42107 1.14906 1.84746 1.22315 0.92254 0.80816 1.02220 1.22088 1.01227 0.89100 1.03109 0.86505 1.22994 1.02340 1.02033 0.90663 1.22414 0.97296 0.94841 1.00594 1.22495 0.93794 0.96087 1.01839 1.22728 0.96712 0.96197 1.01715 1.22485 0.97393 0.94630 0.99172 0.92858 0.95606 0.95588 0.88978 0.88962 0.91471 0.91233 0.88334 0.88261 0.89516 0.91223 0.90113 0.91253 0.91346 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.49 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.87 4.26 -27.88 -0.12 0.76 16 10 C -0.10 -2.16 5.75 -27.88 -0.16 -2.32 16 11 C 0.46 9.31 7.96 36.00 0.29 9.59 16 12 O -0.51 -11.90 15.73 -18.75 -0.29 -12.19 16 13 O -0.36 -6.31 10.22 -39.26 -0.40 -6.71 16 14 C 0.10 1.41 5.55 37.16 0.21 1.62 16 15 C -0.14 -1.56 6.07 -90.83 -0.55 -2.11 16 16 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.14 -1.38 10.18 -26.94 -0.27 -1.65 16 18 C -0.15 -1.44 2.92 -154.80 -0.45 -1.89 16 19 C -0.10 -0.94 7.85 -26.14 -0.21 -1.14 16 20 C -0.14 -1.00 8.08 -25.81 -0.21 -1.21 16 21 C -0.10 -0.79 8.10 -26.13 -0.21 -1.00 16 22 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 23 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 24 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 25 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 26 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 27 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 28 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 29 H 0.10 0.94 8.03 -51.92 -0.42 0.52 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 309.08 15.07 4.66 4.66 Total: -1.00 -31.90 309.08 -8.28 -40.18 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -5.86 Total: -3.00 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.10 Total: -13.01 kcal Atomic # 7 Polarization: -27.22 SS G_CDS: 0.74 Total: -26.49 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.70 Total: -18.90 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.90 -8.28 -40.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893467217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.210 kcal (2) G-P(sol) polarization free energy of solvation -31.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds