Wall clock time and date at job start Sun Mar 29 2020 22:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86803 * 119.99997 * 2 1 4 4 H 1.48501 * 109.47032 * 269.99798 * 3 2 1 5 5 H 1.48495 * 109.46988 * 29.99778 * 3 2 1 6 6 H 1.48502 * 109.46957 * 149.99415 * 3 2 1 7 7 C 1.37879 * 119.99893 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99841 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47065 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47248 * 179.97438 * 10 9 7 12 12 O 1.20822 * 119.99804 * 0.02562 * 11 10 9 13 13 O 1.34231 * 120.00053 * 180.02562 * 11 10 9 14 14 C 1.45198 * 116.99983 * 180.02562 * 13 11 10 15 15 C 1.53000 * 109.46884 * 179.97438 * 14 13 11 16 16 H 1.08992 * 115.56284 * 29.34058 * 15 14 13 17 17 C 1.53126 * 117.51192 * 243.60471 * 15 14 13 18 18 C 1.52455 * 59.85538 * 252.55491 * 17 15 14 19 19 C 1.53259 * 128.58765 * 117.60640 * 18 17 15 20 20 C 1.53882 * 86.88654 * 114.93815 * 19 18 17 21 21 C 1.53261 * 128.58256 * 242.39701 * 18 17 15 22 22 H 0.96999 * 119.99519 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47403 * 59.99366 * 9 7 2 24 24 H 1.09004 * 109.46639 * 299.99509 * 9 7 2 25 25 H 1.09008 * 109.46866 * 59.99299 * 10 9 7 26 26 H 1.09001 * 109.47046 * 300.00182 * 10 9 7 27 27 H 1.09002 * 109.47379 * 59.99613 * 14 13 11 28 28 H 1.09001 * 109.46782 * 299.99696 * 14 13 11 29 29 H 1.09007 * 117.50826 * 0.02562 * 17 15 14 30 30 H 1.08997 * 117.51629 * 145.09978 * 17 15 14 31 31 H 1.09001 * 113.64734 * 229.43775 * 19 18 17 32 32 H 1.08999 * 113.64501 * 0.44113 * 19 18 17 33 33 H 1.09003 * 113.59097 * 270.39184 * 20 19 18 34 34 H 1.09006 * 113.59093 * 139.57183 * 20 19 18 35 35 H 1.09003 * 113.64502 * 359.55661 * 21 18 17 36 36 H 1.09003 * 113.64526 * 130.55831 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 0.0012 12 8 0.2835 -4.9671 0.0011 13 8 2.1628 -6.1297 0.0018 14 6 1.3720 -7.3474 0.0018 15 6 2.3040 -8.5607 0.0019 16 1 3.2702 -8.4116 0.4838 17 6 2.2562 -9.4895 -1.2146 18 6 1.6645 -9.9400 0.1163 19 6 0.2102 -10.2950 0.4446 20 6 0.7061 -11.7292 0.7001 21 6 2.0867 -11.1190 0.9999 22 1 -0.4849 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8896 24 1 0.6241 -2.5566 0.8904 25 1 2.8720 -3.6043 0.8905 26 1 2.8719 -3.6044 -0.8894 27 1 0.7435 -7.3725 -0.8884 28 1 0.7428 -7.3719 0.8916 29 1 1.5610 -9.2356 -2.0148 30 1 3.1908 -9.9516 -1.5324 31 1 -0.1703 -9.7985 1.3373 32 1 -0.4635 -10.2109 -0.4081 33 1 0.6919 -12.3605 -0.1884 34 1 0.2420 -12.2038 1.5647 35 1 2.9173 -11.6953 0.5923 36 1 2.2285 -10.8517 2.0471 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893467217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:05 Heat of formation + Delta-G solvation = -76.242541 kcal Electronic energy + Delta-G solvation = -16169.332776 eV Core-core repulsion = 13425.824121 eV Total energy + Delta-G solvation = -2743.508655 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.55314 -40.43728 -37.69177 -35.65660 -34.96375 -33.15071 -29.14896 -27.54138 -26.54085 -24.14491 -23.91800 -21.91410 -21.47865 -19.23793 -18.97037 -18.20272 -17.69465 -17.12094 -16.49413 -16.12930 -16.07591 -15.62858 -15.23342 -14.32652 -14.18710 -13.94619 -13.33740 -13.21689 -13.04267 -12.82905 -12.54457 -12.47641 -12.40516 -12.29807 -12.01955 -11.84802 -11.76229 -11.48420 -11.30046 -11.16301 -10.81632 -10.58280 -10.50784 -8.20420 -6.34432 1.21273 1.43102 1.45883 1.56567 1.64921 2.42884 2.68348 3.13301 3.32370 3.60130 3.69727 3.87361 3.90106 4.07188 4.12542 4.23846 4.39071 4.44313 4.48474 4.52399 4.76485 4.82314 4.83643 4.85271 4.92969 5.07015 5.10841 5.15549 5.36758 5.39895 5.47180 5.48645 5.54024 5.79941 6.12486 6.77451 6.85422 7.35882 8.92336 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.074011 B = 0.003495 C = 0.003412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.229251 B = 8008.732479 C = 8204.180007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.976 3.024 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.038 3.962 10 C -0.094 4.094 11 C 0.464 3.536 12 O -0.546 6.546 13 O -0.355 6.355 14 C 0.095 3.905 15 C -0.153 4.153 16 H 0.120 0.880 17 C -0.136 4.136 18 C -0.149 4.149 19 C -0.115 4.115 20 C -0.128 4.128 21 C -0.096 4.096 22 H 0.264 0.736 23 H -0.011 1.011 24 H -0.010 1.010 25 H 0.116 0.884 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.117 0.883 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.628 -22.516 0.344 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.582 4.582 8 H 0.096 0.904 9 C 0.001 3.999 10 C -0.131 4.131 11 C 0.310 3.690 12 O -0.436 6.436 13 O -0.272 6.272 14 C 0.022 3.978 15 C -0.171 4.171 16 H 0.138 0.862 17 C -0.172 4.172 18 C -0.149 4.149 19 C -0.153 4.153 20 C -0.165 4.165 21 C -0.133 4.133 22 H 0.073 0.927 23 H 0.008 0.992 24 H 0.008 0.992 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.136 0.864 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.118 -22.467 0.349 23.287 hybrid contribution -0.431 1.080 -0.039 1.163 sum 5.687 -21.387 0.310 22.132 Atomic orbital electron populations 1.70167 1.08258 1.27955 1.51225 1.26125 0.95752 1.03931 0.94480 0.85290 0.78654 0.77575 0.78551 1.19679 1.21142 1.17925 1.21646 0.94137 0.91252 1.51182 0.90381 1.18805 0.93696 0.92005 0.95438 1.21527 0.99338 0.85948 1.06306 1.24560 0.87167 0.86597 0.70716 1.90621 1.17580 1.88381 1.47052 1.86509 1.41865 1.14903 1.83903 1.22553 0.92957 0.80542 1.01768 1.22023 1.01030 0.88547 1.05499 0.86163 1.23084 1.03124 1.00757 0.90276 1.22622 0.97820 0.93768 1.00678 1.22590 0.93545 0.97556 1.01577 1.22715 0.96075 0.95173 1.02524 1.22531 0.98126 0.93692 0.98994 0.92735 0.99216 0.99202 0.86555 0.86526 0.91934 0.91846 0.88472 0.86446 0.90069 0.91509 0.89257 0.90223 0.90121 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.69 13.29 21.45 0.28 -58.41 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.17 16 3 Si 0.98 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.54 -30.71 9.11 25.60 0.23 -30.48 16 8 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 9 C 0.04 2.08 4.26 29.85 0.13 2.21 16 10 C -0.09 -3.88 5.75 29.85 0.17 -3.71 16 11 C 0.46 19.06 7.96 71.24 0.57 19.62 16 12 O -0.55 -26.53 15.73 21.98 0.35 -26.18 16 13 O -0.35 -12.04 10.22 -51.42 -0.53 -12.57 16 14 C 0.10 2.74 5.55 71.98 0.40 3.14 16 15 C -0.15 -3.30 6.07 -10.93 -0.07 -3.36 16 16 H 0.12 2.51 8.14 -2.39 -0.02 2.50 16 17 C -0.14 -2.36 10.18 30.46 0.31 -2.05 16 18 C -0.15 -2.59 2.92 -52.37 -0.15 -2.75 16 19 C -0.12 -1.94 7.85 30.98 0.24 -1.69 16 20 C -0.13 -1.60 8.08 31.19 0.25 -1.34 16 21 C -0.10 -1.29 8.10 30.98 0.25 -1.04 16 22 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 23 H -0.01 -0.65 8.10 -2.39 -0.02 -0.67 16 24 H -0.01 -0.64 8.10 -2.38 -0.02 -0.66 16 25 H 0.12 4.26 8.14 -2.38 -0.02 4.24 16 26 H 0.12 4.27 8.14 -2.39 -0.02 4.25 16 27 H 0.06 1.84 7.87 -2.39 -0.02 1.82 16 28 H 0.06 1.88 8.13 -2.39 -0.02 1.86 16 29 H 0.10 1.72 8.03 -2.38 -0.02 1.70 16 30 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.86 309.08 5.97 -63.90 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 1.04 Total: 8.58 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 2.80 Total: -21.28 kcal Atomic # 7 Polarization: -58.69 SS G_CDS: 0.28 Total: -58.41 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.18 Total: -38.75 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -69.86 5.97 -63.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893467217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.344 kcal (2) G-P(sol) polarization free energy of solvation -69.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds