Wall clock time and date at job start Sun Mar 29 2020 22:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46851 * 2 1 4 4 C 1.50700 * 109.46705 * 119.99997 * 2 1 3 5 5 H 1.08002 * 119.99439 * 120.00544 * 4 2 1 6 6 C 1.37871 * 120.00047 * 299.99704 * 4 2 1 7 7 N 1.31516 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00072 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47007 * 89.99904 * 8 6 4 10 10 H 1.48495 * 109.47206 * 210.00663 * 8 6 4 11 11 H 1.48496 * 109.46709 * 330.00362 * 8 6 4 12 12 C 1.50701 * 109.47286 * 240.00265 * 2 1 3 13 13 O 1.20829 * 119.99695 * 240.00455 * 12 2 1 14 14 O 1.34229 * 119.99804 * 59.99742 * 12 2 1 15 15 C 1.45204 * 116.99359 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46784 * 180.02562 * 15 14 12 17 17 C 1.55589 * 119.99542 * 249.13359 * 16 15 14 18 18 C 1.53012 * 59.96043 * 249.03635 * 17 16 15 19 19 H 1.08995 * 119.29142 * 111.67354 * 18 17 16 20 20 C 1.54264 * 118.19752 * 265.81678 * 18 17 16 21 21 C 1.54892 * 104.19651 * 41.78278 * 20 18 17 22 22 C 1.54266 * 117.41493 * 45.29165 * 16 15 14 23 23 H 1.08993 * 109.47154 * 300.00120 * 1 2 3 24 24 H 1.09004 * 109.46694 * 59.99707 * 1 2 3 25 25 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 26 26 H 0.97007 * 119.99779 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47050 * 60.00617 * 15 14 12 28 28 H 1.08999 * 109.47516 * 299.99779 * 15 14 12 29 29 H 1.09000 * 118.05245 * 141.85502 * 17 16 15 30 30 H 1.08994 * 117.11940 * 356.63136 * 17 16 15 31 31 H 1.08993 * 110.49070 * 283.10101 * 20 18 17 32 32 H 1.09001 * 110.59511 * 160.51469 * 20 18 17 33 33 H 1.09000 * 110.75513 * 279.62815 * 21 20 18 34 34 H 1.09002 * 110.91731 * 156.32611 * 21 20 18 35 35 H 1.09002 * 110.48609 * 44.91038 * 22 16 15 36 36 H 1.08998 * 110.48769 * 282.40130 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5653 3.7122 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6928 -1.1196 14 8 1.7081 -0.2517 -2.4496 15 6 2.2269 -0.9863 -3.5896 16 6 1.7560 -0.3190 -4.8834 17 6 0.7221 -1.0375 -5.7975 18 6 2.1681 -0.8630 -6.2664 19 1 2.8072 -1.7407 -6.3623 20 6 2.5084 0.3624 -7.1395 21 6 1.7270 1.5266 -6.4813 22 6 1.8625 1.2176 -4.9696 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7081 1.1609 3.4844 27 1 1.8626 -2.0131 -3.5566 28 1 3.3164 -0.9860 -3.5569 29 1 -0.0410 -0.4301 -6.2844 30 1 0.4072 -2.0379 -5.5007 31 1 2.1699 0.2068 -8.1638 32 1 3.5797 0.5622 -7.1190 33 1 0.6808 1.5109 -6.7865 34 1 2.1837 2.4867 -6.7217 35 1 2.8296 1.5545 -4.5965 36 1 1.0539 1.6880 -4.4101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893629607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:39 Heat of formation + Delta-G solvation = -77.397563 kcal Electronic energy + Delta-G solvation = -16990.744361 eV Core-core repulsion = 14247.185620 eV Total energy + Delta-G solvation = -2743.558741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.98244 -39.09959 -35.56837 -33.85167 -31.62573 -30.59939 -28.93449 -26.29945 -25.17740 -23.33683 -22.69738 -19.99513 -19.40442 -18.79968 -16.71013 -16.26162 -15.98722 -15.53893 -15.18155 -14.83094 -14.10813 -13.51325 -13.28917 -12.84574 -12.72684 -12.49359 -12.05490 -11.60011 -11.27357 -11.11958 -11.09342 -11.01882 -10.83538 -10.71644 -10.65619 -10.35076 -10.20037 -10.04671 -9.93173 -9.37960 -9.02244 -9.01886 -8.42829 -6.08635 -4.13886 3.27187 3.31495 3.36895 3.37283 3.44822 3.76223 4.39462 4.42801 4.60400 4.74790 4.90982 5.02717 5.24637 5.31174 5.39746 5.45976 5.61161 5.66110 5.69732 5.80092 5.89512 5.93878 6.04845 6.12540 6.19143 6.28809 6.34541 6.69537 6.90759 6.91771 7.28887 7.47034 7.76734 7.97001 8.16967 8.89348 8.97083 9.51539 10.98757 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052961 B = 0.004920 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.559984 B = 5689.452875 C = 5889.862428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.058 3.942 3 H 0.063 0.937 4 C -0.512 4.512 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.892 5.892 8 Si 0.904 3.096 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.464 3.536 13 O -0.521 6.521 14 O -0.360 6.360 15 C 0.109 3.891 16 C -0.136 4.136 17 C -0.144 4.144 18 C -0.157 4.157 19 H 0.108 0.892 20 C -0.095 4.095 21 C -0.131 4.131 22 C -0.082 4.082 23 H 0.095 0.905 24 H 0.023 0.977 25 H 0.030 0.970 26 H 0.263 0.737 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 0.775 -16.688 16.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.081 0.919 4 C -0.550 4.550 5 H 0.093 0.907 6 C -0.140 4.140 7 N -0.531 5.531 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.408 6.408 14 O -0.278 6.278 15 C 0.035 3.965 16 C -0.137 4.137 17 C -0.181 4.181 18 C -0.175 4.175 19 H 0.126 0.874 20 C -0.132 4.132 21 C -0.169 4.169 22 C -0.119 4.119 23 H 0.114 0.886 24 H 0.043 0.957 25 H 0.049 0.951 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.050 0.586 -16.538 16.549 hybrid contribution 0.443 -0.672 0.791 1.129 sum 0.493 -0.086 -15.747 15.755 Atomic orbital electron populations 1.21721 0.95622 0.99989 1.01698 1.18747 0.94855 0.96931 0.85602 0.91887 1.21141 1.31806 1.13211 0.88829 0.90689 1.24934 0.94915 0.95040 0.99107 1.69886 1.36532 1.22885 1.23801 0.86383 0.78491 0.80173 0.81780 1.20539 1.21132 1.19701 1.25348 0.76514 0.83195 0.84054 1.90491 1.36540 1.26882 1.86888 1.86613 1.70318 1.55662 1.15157 1.22020 0.97986 0.94274 0.82266 1.22636 1.05430 0.95509 0.90078 1.23423 0.91868 1.01314 1.01489 1.23352 0.98438 0.99785 0.95898 0.87382 1.21914 1.00306 0.92885 0.98114 1.22549 1.00357 0.98153 0.95807 1.21756 1.02700 0.91928 0.95510 0.88617 0.95747 0.95065 0.92729 0.91897 0.91643 0.88627 0.88290 0.91533 0.90950 0.91396 0.91200 0.90866 0.90623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.90 37.16 0.33 -2.86 16 2 C 0.06 1.49 2.74 -92.92 -0.25 1.24 16 3 H 0.06 1.68 8.14 -51.93 -0.42 1.26 16 4 C -0.51 -14.58 8.37 -34.44 -0.29 -14.86 16 5 H 0.07 2.23 6.76 -52.49 -0.35 1.87 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.46 11.19 7.25 36.01 0.26 11.45 16 13 O -0.52 -13.63 15.21 -18.75 -0.29 -13.91 16 14 O -0.36 -7.38 9.75 -39.25 -0.38 -7.76 16 15 C 0.11 1.83 5.79 37.16 0.22 2.05 16 16 C -0.14 -1.84 2.83 -151.83 -0.43 -2.27 16 17 C -0.14 -1.64 9.73 -25.35 -0.25 -1.88 16 18 C -0.16 -1.70 6.87 -89.31 -0.61 -2.31 16 19 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 20 C -0.09 -0.88 6.76 -25.07 -0.17 -1.05 16 21 C -0.13 -1.28 6.44 -24.74 -0.16 -1.44 16 22 C -0.08 -1.03 6.11 -25.07 -0.15 -1.18 16 23 H 0.10 2.47 6.07 -51.93 -0.32 2.16 16 24 H 0.02 0.51 8.11 -51.93 -0.42 0.09 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.06 1.06 8.06 -51.93 -0.42 0.64 16 28 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 29 H 0.10 0.98 7.27 -51.93 -0.38 0.61 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.63 7.41 -51.93 -0.38 0.24 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 297.64 15.07 4.49 4.49 Total: -1.00 -29.81 297.64 -7.81 -37.62 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -5.63 Total: -1.15 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.60 Total: -11.51 kcal Atomic # 7 Polarization: -25.03 SS G_CDS: 0.63 Total: -24.40 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.67 Total: -21.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.81 -7.81 -37.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893629607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.774 kcal (2) G-P(sol) polarization free energy of solvation -29.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds