Wall clock time and date at job start Sun Mar 29 2020 22:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46851 * 2 1 4 4 C 1.50700 * 109.46705 * 119.99997 * 2 1 3 5 5 H 1.08002 * 119.99439 * 120.00544 * 4 2 1 6 6 C 1.37871 * 120.00047 * 299.99704 * 4 2 1 7 7 N 1.31516 * 120.00115 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00072 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47007 * 89.99904 * 8 6 4 10 10 H 1.48495 * 109.47206 * 210.00663 * 8 6 4 11 11 H 1.48496 * 109.46709 * 330.00362 * 8 6 4 12 12 C 1.50701 * 109.47286 * 240.00265 * 2 1 3 13 13 O 1.20829 * 119.99695 * 240.00455 * 12 2 1 14 14 O 1.34229 * 119.99804 * 59.99742 * 12 2 1 15 15 C 1.45204 * 116.99359 * 180.02562 * 14 12 2 16 16 C 1.52999 * 109.46784 * 180.02562 * 15 14 12 17 17 C 1.55589 * 119.99542 * 249.13359 * 16 15 14 18 18 C 1.53012 * 59.96043 * 249.03635 * 17 16 15 19 19 H 1.08995 * 119.29142 * 111.67354 * 18 17 16 20 20 C 1.54264 * 118.19752 * 265.81678 * 18 17 16 21 21 C 1.54892 * 104.19651 * 41.78278 * 20 18 17 22 22 C 1.54266 * 117.41493 * 45.29165 * 16 15 14 23 23 H 1.08993 * 109.47154 * 300.00120 * 1 2 3 24 24 H 1.09004 * 109.46694 * 59.99707 * 1 2 3 25 25 H 1.08999 * 109.46991 * 179.97438 * 1 2 3 26 26 H 0.97007 * 119.99779 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.47050 * 60.00617 * 15 14 12 28 28 H 1.08999 * 109.47516 * 299.99779 * 15 14 12 29 29 H 1.09000 * 118.05245 * 141.85502 * 17 16 15 30 30 H 1.08994 * 117.11940 * 356.63136 * 17 16 15 31 31 H 1.08993 * 110.49070 * 283.10101 * 20 18 17 32 32 H 1.09001 * 110.59511 * 160.51469 * 20 18 17 33 33 H 1.09000 * 110.75513 * 279.62815 * 21 20 18 34 34 H 1.09002 * 110.91731 * 156.32611 * 21 20 18 35 35 H 1.09002 * 110.48609 * 44.91038 * 22 16 15 36 36 H 1.08998 * 110.48769 * 282.40130 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 0.9428 0.8297 2.6033 8 14 2.3224 -1.1196 4.0080 9 1 3.6303 -0.5441 4.4119 10 1 1.3443 -0.9491 5.1122 11 1 2.4879 -2.5653 3.7122 12 6 2.0324 -0.7103 -1.2305 13 8 2.7271 -1.6928 -1.1196 14 8 1.7081 -0.2517 -2.4496 15 6 2.2269 -0.9863 -3.5896 16 6 1.7560 -0.3190 -4.8834 17 6 0.7221 -1.0375 -5.7975 18 6 2.1681 -0.8630 -6.2664 19 1 2.8072 -1.7407 -6.3623 20 6 2.5084 0.3624 -7.1395 21 6 1.7270 1.5266 -6.4813 22 6 1.8625 1.2176 -4.9696 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 0.7081 1.1609 3.4844 27 1 1.8626 -2.0131 -3.5566 28 1 3.3164 -0.9860 -3.5569 29 1 -0.0410 -0.4301 -6.2844 30 1 0.4072 -2.0379 -5.5007 31 1 2.1699 0.2068 -8.1638 32 1 3.5797 0.5622 -7.1190 33 1 0.6808 1.5109 -6.7865 34 1 2.1837 2.4867 -6.7217 35 1 2.8296 1.5545 -4.5965 36 1 1.0539 1.6880 -4.4101 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893629607.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:39 Heat of formation + Delta-G solvation = -92.286109 kcal Electronic energy + Delta-G solvation = -16991.389977 eV Core-core repulsion = 14247.185620 eV Total energy + Delta-G solvation = -2744.204357 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.46175 -40.41361 -37.35154 -35.93452 -32.83348 -32.36449 -30.02700 -27.49369 -27.26597 -24.87495 -23.97154 -21.66943 -20.44907 -19.87221 -18.61876 -17.98766 -17.70794 -17.21261 -16.69467 -15.98633 -15.70894 -14.96706 -14.63609 -14.37487 -14.10775 -13.63647 -13.51278 -13.33881 -12.99292 -12.81231 -12.62886 -12.31826 -12.28873 -12.06950 -11.95980 -11.89806 -11.77857 -11.66397 -11.15186 -11.12477 -10.86420 -10.55044 -10.30610 -8.20953 -6.34536 1.40614 1.42047 1.43684 1.53608 1.82284 2.42479 2.68364 3.08926 3.50075 3.59801 3.74685 3.88602 4.15606 4.22454 4.29742 4.43153 4.52165 4.62296 4.66953 4.68870 4.83049 4.88961 4.96691 4.98961 5.04225 5.09019 5.19747 5.30205 5.32312 5.38400 5.44738 5.48861 5.68267 5.87232 6.09085 6.71704 7.04121 7.34351 8.85580 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.052961 B = 0.004920 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.559984 B = 5689.452875 C = 5889.862428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 H 0.050 0.950 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.023 3.977 7 N -0.909 5.909 8 Si 0.965 3.035 9 H -0.272 1.272 10 H -0.272 1.272 11 H -0.276 1.276 12 C 0.471 3.529 13 O -0.547 6.547 14 O -0.355 6.355 15 C 0.105 3.895 16 C -0.169 4.169 17 C -0.136 4.136 18 C -0.137 4.137 19 H 0.116 0.884 20 C -0.092 4.092 21 C -0.124 4.124 22 C -0.085 4.085 23 H 0.078 0.922 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.269 0.731 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.342 0.782 -18.096 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.031 3.969 3 H 0.068 0.932 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.789 3.211 9 H -0.198 1.198 10 H -0.197 1.197 11 H -0.201 1.201 12 C 0.317 3.683 13 O -0.437 6.437 14 O -0.272 6.272 15 C 0.032 3.968 16 C -0.169 4.169 17 C -0.173 4.173 18 C -0.155 4.155 19 H 0.134 0.866 20 C -0.130 4.130 21 C -0.161 4.161 22 C -0.122 4.122 23 H 0.097 0.903 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.128 0.872 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.080 0.920 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.206 0.615 -17.971 17.983 hybrid contribution 0.520 -0.659 1.154 1.427 sum 0.315 -0.044 -16.817 16.820 Atomic orbital electron populations 1.21546 0.94312 0.99833 1.01973 1.18677 0.95953 0.96079 0.86147 0.93212 1.21247 1.32712 1.13306 0.90552 0.92686 1.25647 0.94839 0.95662 1.01565 1.69963 1.36539 1.23409 1.24782 0.85455 0.78427 0.78701 0.78479 1.19783 1.19710 1.20100 1.24898 0.75953 0.82516 0.84948 1.90467 1.37707 1.27982 1.87542 1.86569 1.69912 1.55753 1.14957 1.22310 0.97839 0.94405 0.82276 1.22631 1.08726 0.96084 0.89478 1.23538 0.92463 1.01233 1.00056 1.23539 0.98091 1.00420 0.93467 0.86632 1.21968 1.00688 0.91543 0.98751 1.22532 1.01223 0.99084 0.93247 1.21758 1.01466 0.91286 0.97730 0.90300 0.93355 0.95317 0.92206 0.92068 0.92138 0.87183 0.88068 0.89355 0.90396 0.90522 0.89894 0.92020 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.76 8.90 71.98 0.64 -5.12 16 2 C 0.05 2.67 2.74 -12.28 -0.03 2.64 16 3 H 0.05 2.74 8.14 -2.38 -0.02 2.72 16 4 C -0.54 -31.41 8.37 25.60 0.21 -31.20 16 5 H 0.05 3.36 6.76 -2.91 -0.02 3.34 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -50.99 11.32 21.45 0.24 -50.75 16 8 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 9 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 12 C 0.47 23.21 7.25 71.24 0.52 23.73 16 13 O -0.55 -29.36 15.21 21.95 0.33 -29.03 16 14 O -0.35 -14.73 9.75 -51.41 -0.50 -15.23 16 15 C 0.11 3.56 5.79 71.98 0.42 3.98 16 16 C -0.17 -4.36 2.83 -50.45 -0.14 -4.51 16 17 C -0.14 -2.78 9.73 31.49 0.31 -2.47 16 18 C -0.14 -2.63 6.87 -9.95 -0.07 -2.70 16 19 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 20 C -0.09 -1.41 6.76 31.67 0.21 -1.20 16 21 C -0.12 -2.09 6.44 31.89 0.21 -1.88 16 22 C -0.08 -2.07 6.11 31.67 0.19 -1.87 16 23 H 0.08 4.10 6.07 -2.39 -0.01 4.08 16 24 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 25 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.27 14.15 8.31 -92.70 -0.77 13.38 16 27 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 28 H 0.06 2.07 8.13 -2.39 -0.02 2.05 16 29 H 0.11 1.93 7.27 -2.39 -0.02 1.92 16 30 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.18 7.41 -2.39 -0.02 1.16 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -63.71 297.64 6.06 -57.64 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.05 Total: 9.87 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: 2.91 Total: -18.88 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.24 Total: -50.75 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: -0.17 Total: -44.26 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -63.71 6.06 -57.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893629607.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.643 kcal (2) G-P(sol) polarization free energy of solvation -63.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds