Wall clock time and date at job start Sun Mar 29 2020 22:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34235 * 117.00385 * 179.97438 * 12 11 10 14 14 O 1.20824 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00281 * 180.02562 * 13 12 11 16 16 H 1.08995 * 109.64439 * 299.58093 * 15 13 12 17 17 C 1.53025 * 109.64093 * 60.00216 * 15 13 12 18 18 C 1.50069 * 110.14553 * 169.11929 * 17 15 13 19 19 C 1.29442 * 124.07519 * 342.87253 * 18 17 15 20 20 C 1.50062 * 124.07763 * 0.48626 * 19 18 17 21 21 C 1.53040 * 110.13848 * 342.83250 * 20 19 18 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.09001 * 109.36035 * 289.32584 * 17 15 13 30 30 H 1.08994 * 109.35802 * 49.05187 * 17 15 13 31 31 H 1.08005 * 117.96305 * 162.88512 * 18 17 15 32 32 H 1.08011 * 117.95974 * 180.46725 * 19 18 17 33 33 H 1.09003 * 109.36092 * 103.05958 * 20 19 18 34 34 H 1.09003 * 109.35946 * 222.64313 * 20 19 18 35 35 H 1.08997 * 109.66144 * 289.78124 * 21 20 19 36 36 H 1.09003 * 109.63322 * 169.13965 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 8 6.0354 -4.0056 -0.0027 13 6 7.3662 -4.1815 -0.0043 14 8 8.1022 -3.2234 -0.0049 15 6 7.9421 -5.5741 -0.0055 16 1 7.6149 -6.1067 0.8874 17 6 7.4714 -6.3243 -1.2534 18 6 8.2384 -7.6050 -1.4066 19 6 9.3542 -7.8589 -0.8015 20 6 10.0314 -6.9123 0.1457 21 6 9.4739 -5.4985 -0.0340 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8907 27 1 5.9141 -2.1231 -0.8927 28 1 5.9156 -2.1225 0.8872 29 1 6.4087 -6.5485 -1.1609 30 1 7.6339 -5.7009 -2.1326 31 1 7.8345 -8.3620 -2.0626 32 1 9.8271 -8.8116 -0.9900 33 1 9.8590 -7.2416 1.1704 34 1 11.1029 -6.9061 -0.0541 35 1 9.8031 -5.0933 -0.9908 36 1 9.8244 -4.8607 0.7776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000914620435.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:49 Heat of formation + Delta-G solvation = -101.507553 kcal Electronic energy + Delta-G solvation = -16371.218174 eV Core-core repulsion = 13626.613946 eV Total energy + Delta-G solvation = -2744.604229 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60948 -38.34624 -36.43310 -34.08128 -32.02399 -31.53253 -31.05099 -27.63878 -24.61608 -23.46872 -22.58226 -20.60706 -20.11660 -18.27482 -17.51402 -17.00789 -16.49198 -16.23892 -15.45938 -14.42069 -14.20812 -14.11237 -13.89978 -13.45508 -12.97421 -12.77334 -12.73383 -12.51302 -12.18595 -11.92475 -11.30220 -11.09270 -11.05302 -10.95084 -10.69229 -10.43401 -10.37872 -9.96410 -9.79018 -9.71244 -9.28450 -9.25275 -8.57266 -6.07522 -4.06553 2.00296 2.28207 2.82221 3.29562 3.37155 3.40720 4.30914 4.40375 4.42593 4.59714 4.89156 4.96216 5.02072 5.12107 5.23712 5.25841 5.42436 5.46149 5.50104 5.55278 5.61836 5.72424 5.87067 5.89385 5.98687 6.33510 6.36941 6.38925 6.64957 6.67990 6.81192 7.20924 7.32173 7.72090 7.89114 8.49355 8.96774 9.54058 11.05681 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057086 B = 0.003883 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.370812 B = 7208.370092 C = 7561.050366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.074 0.926 9 C -0.011 4.011 10 C -0.101 4.101 11 C 0.065 3.935 12 O -0.354 6.354 13 C 0.461 3.539 14 O -0.512 6.512 15 C -0.081 4.081 16 H 0.110 0.890 17 C -0.084 4.084 18 C -0.150 4.150 19 C -0.160 4.160 20 C -0.091 4.091 21 C -0.105 4.105 22 H 0.264 0.736 23 H 0.019 0.981 24 H 0.014 0.986 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.052 -14.505 -0.863 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.092 0.908 9 C -0.048 4.048 10 C -0.139 4.139 11 C -0.008 4.008 12 O -0.271 6.271 13 C 0.304 3.696 14 O -0.401 6.401 15 C -0.100 4.100 16 H 0.128 0.872 17 C -0.121 4.121 18 C -0.168 4.168 19 C -0.178 4.178 20 C -0.128 4.128 21 C -0.142 4.142 22 H 0.074 0.926 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 19.071 -14.067 -0.865 23.714 hybrid contribution 0.323 1.033 -0.049 1.084 sum 19.395 -13.034 -0.914 23.385 Atomic orbital electron populations 1.69908 1.06286 1.26981 1.50866 1.25017 0.94759 0.99182 0.94457 0.86782 0.80376 0.83571 0.78605 1.20197 1.21267 1.18985 1.21060 0.89051 0.94671 1.51191 0.90791 1.19522 0.97527 0.91120 0.96658 1.21554 0.88778 1.00748 1.02806 1.23490 0.97075 0.78239 1.02022 1.86507 1.23426 1.34133 1.83011 1.23619 0.81344 0.92222 0.72425 1.90645 1.60760 1.43184 1.45504 1.21127 0.96673 0.90327 1.01852 0.87224 1.20424 1.00748 0.94498 0.96386 1.22017 0.96407 0.97809 1.00540 1.22079 0.96865 0.99852 0.99028 1.20484 0.99913 0.93375 0.99010 1.21528 0.91960 0.96915 1.03824 0.92639 0.96298 0.96727 0.91522 0.91549 0.91603 0.91590 0.89206 0.90229 0.87337 0.87756 0.90575 0.90506 0.90849 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 7 C -0.52 -14.89 9.66 -34.44 -0.33 -15.23 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.10 -2.02 5.53 -26.73 -0.15 -2.17 16 11 C 0.06 1.14 5.47 37.16 0.20 1.34 16 12 O -0.35 -5.70 10.15 -39.27 -0.40 -6.10 16 13 C 0.46 6.75 7.24 36.00 0.26 7.01 16 14 O -0.51 -8.84 15.64 -18.75 -0.29 -9.14 16 15 C -0.08 -0.86 2.69 -91.56 -0.25 -1.10 16 16 H 0.11 1.03 8.13 -51.93 -0.42 0.60 16 17 C -0.08 -0.80 5.37 -28.17 -0.15 -0.95 16 18 C -0.15 -1.22 9.80 -35.90 -0.35 -1.57 16 19 C -0.16 -1.21 9.80 -35.90 -0.35 -1.56 16 20 C -0.09 -0.67 6.12 -28.17 -0.17 -0.84 16 21 C -0.10 -1.00 4.70 -26.51 -0.12 -1.12 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 24 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.07 1.15 8.13 -51.93 -0.42 0.72 16 28 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 31 H 0.11 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.75 8.12 -51.93 -0.42 0.33 16 36 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 LS Contribution 300.27 15.07 4.53 4.53 Total: -1.00 -31.57 300.27 -7.52 -39.09 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -5.83 Total: -3.73 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -1.63 Total: -14.68 kcal Atomic # 7 Polarization: -27.82 SS G_CDS: 0.77 Total: -27.05 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: -0.69 Total: -15.24 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.57 -7.52 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914620435.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.420 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds