Wall clock time and date at job start Sun Mar 29 2020 22:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37877 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00223 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34235 * 117.00385 * 179.97438 * 12 11 10 14 14 O 1.20824 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00281 * 180.02562 * 13 12 11 16 16 H 1.08995 * 109.64439 * 299.58093 * 15 13 12 17 17 C 1.53025 * 109.64093 * 60.00216 * 15 13 12 18 18 C 1.50069 * 110.14553 * 169.11929 * 17 15 13 19 19 C 1.29442 * 124.07519 * 342.87253 * 18 17 15 20 20 C 1.50062 * 124.07763 * 0.48626 * 19 18 17 21 21 C 1.53040 * 110.13848 * 342.83250 * 20 19 18 22 22 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 24 24 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 25 25 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 26 26 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 29 29 H 1.09001 * 109.36035 * 289.32584 * 17 15 13 30 30 H 1.08994 * 109.35802 * 49.05187 * 17 15 13 31 31 H 1.08005 * 117.96305 * 162.88512 * 18 17 15 32 32 H 1.08011 * 117.95974 * 180.46725 * 19 18 17 33 33 H 1.09003 * 109.36092 * 103.05958 * 20 19 18 34 34 H 1.09003 * 109.35946 * 222.64313 * 20 19 18 35 35 H 1.08997 * 109.66144 * 289.78124 * 21 20 19 36 36 H 1.09003 * 109.63322 * 169.13965 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6367 -0.0022 12 8 6.0354 -4.0056 -0.0027 13 6 7.3662 -4.1815 -0.0043 14 8 8.1022 -3.2234 -0.0049 15 6 7.9421 -5.5741 -0.0055 16 1 7.6149 -6.1067 0.8874 17 6 7.4714 -6.3243 -1.2534 18 6 8.2384 -7.6050 -1.4066 19 6 9.3542 -7.8589 -0.8015 20 6 10.0314 -6.9123 0.1457 21 6 9.4739 -5.4985 -0.0340 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6804 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6584 -3.1503 0.8892 26 1 3.6578 -3.1506 -0.8907 27 1 5.9141 -2.1231 -0.8927 28 1 5.9156 -2.1225 0.8872 29 1 6.4087 -6.5485 -1.1609 30 1 7.6339 -5.7009 -2.1326 31 1 7.8345 -8.3620 -2.0626 32 1 9.8271 -8.8116 -0.9900 33 1 9.8590 -7.2416 1.1704 34 1 11.1029 -6.9061 -0.0541 35 1 9.8031 -5.0933 -0.9908 36 1 9.8244 -4.8607 0.7776 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000914620435.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:49 Heat of formation + Delta-G solvation = -118.666463 kcal Electronic energy + Delta-G solvation = -16371.962241 eV Core-core repulsion = 13626.613946 eV Total energy + Delta-G solvation = -2745.348295 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.76878 -39.18918 -37.71489 -35.94899 -33.91245 -32.45583 -31.72781 -29.44287 -25.80737 -24.53560 -23.78078 -22.11077 -21.48759 -19.07199 -18.98042 -18.59863 -17.69835 -17.48950 -16.42835 -16.24183 -15.68483 -15.00647 -14.85966 -14.68584 -14.27124 -14.16700 -13.94530 -13.68227 -13.30291 -13.19027 -12.85272 -12.61285 -12.19878 -12.06835 -11.96513 -11.81174 -11.77538 -11.46570 -11.38426 -11.37012 -11.10284 -10.78782 -9.87363 -8.31431 -6.36562 1.11012 1.36015 1.37525 1.42870 1.49323 1.64362 2.34682 3.03679 3.43717 3.65842 3.77438 3.98131 4.01543 4.09802 4.21816 4.35791 4.36462 4.40725 4.59656 4.71791 4.72129 4.73319 4.87757 4.94246 5.00929 5.06208 5.21222 5.28521 5.33761 5.47026 5.51059 5.61337 5.76345 6.06130 6.24499 6.66331 6.71963 7.28047 8.85180 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.057086 B = 0.003883 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.370812 B = 7208.370092 C = 7561.050366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.950 3.050 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.036 0.964 9 C -0.009 4.009 10 C -0.092 4.092 11 C 0.073 3.927 12 O -0.358 6.358 13 C 0.460 3.540 14 O -0.540 6.540 15 C -0.076 4.076 16 H 0.127 0.873 17 C -0.082 4.082 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.089 4.089 21 C -0.103 4.103 22 H 0.268 0.732 23 H 0.025 0.975 24 H 0.024 0.976 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.370 -14.939 -0.764 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.192 4.192 3 Si 0.773 3.227 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.054 0.946 9 C -0.047 4.047 10 C -0.130 4.130 11 C 0.000 4.000 12 O -0.274 6.274 13 C 0.305 3.695 14 O -0.430 6.430 15 C -0.095 4.095 16 H 0.144 0.856 17 C -0.119 4.119 18 C -0.180 4.180 19 C -0.174 4.174 20 C -0.125 4.125 21 C -0.141 4.141 22 H 0.076 0.924 23 H 0.043 0.957 24 H 0.042 0.958 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.405 -14.529 -0.767 25.881 hybrid contribution -0.423 1.074 -0.076 1.156 sum 20.982 -13.455 -0.843 24.940 Atomic orbital electron populations 1.70058 1.08280 1.28287 1.52354 1.26005 0.95643 1.03525 0.93996 0.85661 0.79504 0.78209 0.79321 1.19042 1.20815 1.17023 1.21406 0.91686 0.93392 1.50799 0.94599 1.19450 0.94337 0.93743 0.97156 1.21316 0.90697 0.98357 1.02588 1.23176 0.95213 0.79297 1.02359 1.86506 1.24656 1.32986 1.83257 1.24469 0.80371 0.93575 0.71090 1.90631 1.61038 1.44454 1.46851 1.21288 0.97221 0.87825 1.03150 0.85562 1.20406 1.01045 0.95098 0.95381 1.22038 0.96875 0.97403 1.01708 1.22291 0.96395 1.00479 0.98220 1.20520 1.00621 0.91614 0.99777 1.21534 0.91074 0.98479 1.03019 0.92358 0.95674 0.95778 0.91838 0.91808 0.91271 0.91285 0.89322 0.91110 0.86112 0.85905 0.89323 0.89025 0.91897 0.91091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 2 C 0.01 0.31 5.47 84.65 0.46 0.78 16 3 Si 0.95 44.29 27.47 68.60 1.88 46.17 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.25 -10.69 6.54 99.48 0.65 -10.03 16 7 C -0.53 -31.00 9.66 25.60 0.25 -30.76 16 8 H 0.04 2.28 7.99 -2.91 -0.02 2.25 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.09 -3.63 5.53 30.59 0.17 -3.46 16 11 C 0.07 2.49 5.47 71.98 0.39 2.88 16 12 O -0.36 -11.15 10.15 -51.47 -0.52 -11.68 16 13 C 0.46 13.02 7.24 71.23 0.52 13.54 16 14 O -0.54 -18.21 15.64 21.97 0.34 -17.87 16 15 C -0.08 -1.50 2.69 -11.40 -0.03 -1.53 16 16 H 0.13 2.09 8.13 -2.39 -0.02 2.07 16 17 C -0.08 -1.46 5.37 29.66 0.16 -1.30 16 18 C -0.16 -2.29 9.80 27.04 0.27 -2.02 16 19 C -0.16 -1.90 9.80 27.04 0.27 -1.64 16 20 C -0.09 -1.05 6.12 29.66 0.18 -0.87 16 21 C -0.10 -1.81 4.70 30.74 0.14 -1.66 16 22 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 23 H 0.02 1.14 7.20 -2.39 -0.02 1.13 16 24 H 0.02 1.08 7.57 -2.39 -0.02 1.06 16 25 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 26 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 28 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.36 8.10 -2.39 -0.02 1.34 16 31 H 0.12 1.40 8.06 -2.91 -0.02 1.37 16 32 H 0.12 1.08 8.06 -2.90 -0.02 1.06 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 36 H 0.07 1.33 7.90 -2.39 -0.02 1.31 16 Total: -1.00 -67.93 300.27 5.87 -62.06 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: 0.98 Total: 7.12 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 2.89 Total: -26.35 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.30 Total: -59.45 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.18 Total: -29.54 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.17 kcal Total: -67.93 5.87 -62.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000914620435.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.611 kcal (2) G-P(sol) polarization free energy of solvation -67.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds