Wall clock time and date at job start Sun Mar 29 2020 22:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33078 * 120.00415 * 2 1 4 4 C 1.46949 * 119.99720 * 4.28648 * 3 2 1 5 5 O 1.21536 * 120.00062 * 354.12984 * 4 3 2 6 6 O 1.34796 * 119.99808 * 174.12010 * 4 3 2 7 7 C 1.45208 * 117.00265 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47428 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47195 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47377 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99440 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99787 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99518 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47372 * 89.99618 * 14 12 10 16 16 H 1.48500 * 109.47294 * 209.99607 * 14 12 10 17 17 H 1.48506 * 109.47328 * 329.99460 * 14 12 10 18 18 C 1.50709 * 119.99895 * 179.97438 * 2 1 3 19 19 C 1.53005 * 117.49392 * 4.24425 * 18 2 1 20 20 C 1.52996 * 59.99985 * 252.51187 * 19 18 2 21 21 H 1.09003 * 109.47600 * 184.21789 * 1 2 3 22 22 H 1.09007 * 109.46761 * 304.21399 * 1 2 3 23 23 H 1.09000 * 109.46931 * 64.21371 * 1 2 3 24 24 H 1.08000 * 120.00229 * 184.29386 * 3 2 1 25 25 H 1.09000 * 109.47146 * 300.00643 * 7 6 4 26 26 H 1.09007 * 109.46616 * 60.00112 * 7 6 4 27 27 H 1.09000 * 109.47361 * 300.00363 * 8 7 6 28 28 H 1.09007 * 109.46748 * 60.00510 * 8 7 6 29 29 H 1.09005 * 109.46927 * 299.99839 * 9 8 7 30 30 H 1.08997 * 109.47125 * 59.99831 * 9 8 7 31 31 H 0.96999 * 119.99953 * 180.02562 * 13 12 10 32 32 H 1.08997 * 115.54870 * 149.95284 * 18 2 1 33 33 H 1.08996 * 117.50504 * 0.02562 * 19 18 2 34 34 H 1.09004 * 117.49308 * 145.02504 * 19 18 2 35 35 H 1.08999 * 117.50291 * 252.51414 * 20 19 18 36 36 H 1.09002 * 117.52069 * 107.48100 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1524 0.0000 4 6 1.4408 2.4233 0.0951 5 8 0.2258 2.4287 0.0662 6 8 2.1173 3.5831 0.2146 7 6 1.3296 4.7996 0.3041 8 6 2.2641 6.0041 0.4331 9 6 1.4340 7.2858 0.5281 10 6 2.3545 8.4723 0.6545 11 1 3.4245 8.3266 0.6664 12 6 1.8305 9.7436 0.7560 13 7 0.5274 9.9208 0.7421 14 14 2.9715 11.2142 0.9135 15 1 3.3059 11.7284 -0.4390 16 1 2.2983 12.2815 1.6963 17 1 4.2175 10.8018 1.6083 18 6 2.2605 -1.3052 0.0006 19 6 1.4415 -2.5937 -0.0993 20 6 2.1053 -2.2099 1.2246 21 1 -0.3634 -1.0249 0.0756 22 1 -0.3633 0.5779 0.8499 23 1 -0.3633 0.4471 -0.9253 24 1 3.2502 1.1537 -0.0700 25 1 0.7221 4.9061 -0.5946 26 1 0.6798 4.7482 1.1778 27 1 2.8719 5.8979 1.3317 28 1 2.9135 6.0553 -0.4409 29 1 0.8259 7.3922 -0.3704 30 1 0.7848 7.2343 1.4021 31 1 0.1589 10.8152 0.8131 32 1 3.2328 -1.2869 -0.4918 33 1 0.3578 -2.4975 -0.1658 34 1 1.8750 -3.4235 -0.6576 35 1 2.9755 -2.7871 1.5374 36 1 1.4587 -1.8609 2.0297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919543813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:28 Heat of formation + Delta-G solvation = -65.798907 kcal Electronic energy + Delta-G solvation = -15948.622878 eV Core-core repulsion = 13205.567093 eV Total energy + Delta-G solvation = -2743.055785 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.18943 -38.43773 -36.42976 -33.94253 -33.41249 -31.66667 -28.38991 -26.94329 -24.72379 -23.03924 -22.74251 -20.88306 -20.29991 -18.57345 -17.50341 -16.41833 -16.25606 -16.17709 -15.61522 -14.64559 -14.45614 -14.17390 -13.33675 -13.16569 -13.07386 -12.38730 -12.18352 -11.98463 -11.91233 -11.74251 -11.54786 -11.16345 -10.94686 -10.82318 -10.61354 -10.58840 -10.30859 -10.02040 -9.68717 -9.46252 -9.19656 -9.14133 -8.37203 -6.01981 -4.04878 1.04475 2.98825 3.04002 3.32186 3.38202 3.41984 3.52709 4.27598 4.45286 4.45871 4.51626 4.67853 4.83914 5.14591 5.21520 5.33976 5.40586 5.49945 5.62263 5.63569 5.68609 5.69228 5.72867 5.92706 6.05832 6.21375 6.26194 6.58285 6.60971 6.91073 7.02937 7.62550 7.73948 7.96559 8.05264 8.38214 9.01488 9.59299 11.09556 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.077050 B = 0.003228 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.315385 B = 8672.355322 C = 8921.241716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.000 4.000 3 C -0.199 4.199 4 C 0.488 3.512 5 O -0.515 6.515 6 O -0.356 6.356 7 C 0.069 3.931 8 C -0.109 4.109 9 C 0.024 3.976 10 C -0.521 4.521 11 H 0.058 0.942 12 C 0.056 3.944 13 N -0.895 5.895 14 Si 0.895 3.105 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.273 1.273 18 C -0.133 4.133 19 C -0.175 4.175 20 C -0.163 4.163 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.137 0.863 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.261 0.739 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.561 -23.789 -1.127 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.001 4.001 3 C -0.218 4.218 4 C 0.335 3.665 5 O -0.407 6.407 6 O -0.272 6.272 7 C -0.004 4.004 8 C -0.147 4.147 9 C -0.013 4.013 10 C -0.559 4.559 11 H 0.076 0.924 12 C -0.145 4.145 13 N -0.534 5.534 14 Si 0.723 3.277 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 C -0.151 4.151 19 C -0.212 4.212 20 C -0.200 4.200 21 H 0.078 0.922 22 H 0.106 0.894 23 H 0.103 0.897 24 H 0.155 0.845 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.071 0.929 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.071 -23.589 -1.114 23.706 hybrid contribution 0.525 1.035 0.039 1.161 sum 2.596 -22.554 -1.075 22.729 Atomic orbital electron populations 1.21225 0.90588 1.01763 1.04695 1.21859 0.96276 0.92355 0.89590 1.21658 1.00728 0.88971 1.10412 1.21381 0.86218 0.85351 0.73559 1.90821 1.15119 1.88058 1.46655 1.86588 1.42103 1.15699 1.82851 1.23463 0.94583 0.80419 1.01899 1.21758 0.98445 0.92642 1.01832 1.19052 0.95163 0.89501 0.97612 1.21184 0.93141 0.91205 1.50395 0.92425 1.25031 0.95082 0.99127 0.95258 1.69965 1.10737 1.22255 1.50468 0.86545 0.80810 0.82244 0.78116 1.20612 1.21196 1.19807 1.21231 1.00639 0.88745 1.04485 1.23157 1.00081 0.97364 1.00604 1.22998 1.03526 1.01813 0.91625 0.92215 0.89376 0.89685 0.84475 0.91602 0.91619 0.92182 0.92176 0.96249 0.96238 0.92903 0.86285 0.87727 0.88192 0.88024 0.88287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 8.22 36.01 0.30 -1.06 16 2 C 0.00 0.00 5.81 -101.14 -0.59 -0.59 16 3 C -0.20 -2.44 9.79 -37.85 -0.37 -2.81 16 4 C 0.49 7.91 7.86 34.26 0.27 8.18 16 5 O -0.51 -9.21 12.90 -19.29 -0.25 -9.46 16 6 O -0.36 -6.37 10.23 -40.75 -0.42 -6.79 16 7 C 0.07 1.34 5.48 37.16 0.20 1.55 16 8 C -0.11 -2.34 5.53 -26.73 -0.15 -2.49 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 11 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.14 13.29 55.43 0.74 -26.41 16 14 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 18 C -0.13 -1.03 6.01 -91.76 -0.55 -1.58 16 19 C -0.18 -1.09 9.86 -26.73 -0.26 -1.35 16 20 C -0.16 -1.06 10.23 -26.73 -0.27 -1.33 16 21 H 0.06 0.49 5.44 -51.93 -0.28 0.20 16 22 H 0.09 1.10 6.84 -51.93 -0.36 0.74 16 23 H 0.08 1.01 7.58 -51.93 -0.39 0.61 16 24 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 25 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.10 0.64 5.90 -51.93 -0.31 0.33 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 306.88 15.07 4.62 4.62 Total: -1.00 -31.43 306.88 -7.83 -39.26 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.53 Total: -3.30 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -1.98 Total: -14.70 kcal Atomic # 7 Polarization: -27.14 SS G_CDS: 0.74 Total: -26.41 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.67 Total: -16.24 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.43 -7.83 -39.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919543813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.537 kcal (2) G-P(sol) polarization free energy of solvation -31.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds