Wall clock time and date at job start Sun Mar 29 2020 22:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33078 * 120.00415 * 2 1 4 4 C 1.46949 * 119.99720 * 4.28648 * 3 2 1 5 5 O 1.21536 * 120.00062 * 354.12984 * 4 3 2 6 6 O 1.34796 * 119.99808 * 174.12010 * 4 3 2 7 7 C 1.45208 * 117.00265 * 180.02562 * 6 4 3 8 8 C 1.52996 * 109.47428 * 180.02562 * 7 6 4 9 9 C 1.52997 * 109.47195 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47377 * 180.02562 * 9 8 7 11 11 H 1.07997 * 119.99440 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99787 * 180.02562 * 10 9 8 13 13 N 1.31508 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 119.99518 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47372 * 89.99618 * 14 12 10 16 16 H 1.48500 * 109.47294 * 209.99607 * 14 12 10 17 17 H 1.48506 * 109.47328 * 329.99460 * 14 12 10 18 18 C 1.50709 * 119.99895 * 179.97438 * 2 1 3 19 19 C 1.53005 * 117.49392 * 4.24425 * 18 2 1 20 20 C 1.52996 * 59.99985 * 252.51187 * 19 18 2 21 21 H 1.09003 * 109.47600 * 184.21789 * 1 2 3 22 22 H 1.09007 * 109.46761 * 304.21399 * 1 2 3 23 23 H 1.09000 * 109.46931 * 64.21371 * 1 2 3 24 24 H 1.08000 * 120.00229 * 184.29386 * 3 2 1 25 25 H 1.09000 * 109.47146 * 300.00643 * 7 6 4 26 26 H 1.09007 * 109.46616 * 60.00112 * 7 6 4 27 27 H 1.09000 * 109.47361 * 300.00363 * 8 7 6 28 28 H 1.09007 * 109.46748 * 60.00510 * 8 7 6 29 29 H 1.09005 * 109.46927 * 299.99839 * 9 8 7 30 30 H 1.08997 * 109.47125 * 59.99831 * 9 8 7 31 31 H 0.96999 * 119.99953 * 180.02562 * 13 12 10 32 32 H 1.08997 * 115.54870 * 149.95284 * 18 2 1 33 33 H 1.08996 * 117.50504 * 0.02562 * 19 18 2 34 34 H 1.09004 * 117.49308 * 145.02504 * 19 18 2 35 35 H 1.08999 * 117.50291 * 252.51414 * 20 19 18 36 36 H 1.09002 * 117.52069 * 107.48100 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1725 1.1524 0.0000 4 6 1.4408 2.4233 0.0951 5 8 0.2258 2.4287 0.0662 6 8 2.1173 3.5831 0.2146 7 6 1.3296 4.7996 0.3041 8 6 2.2641 6.0041 0.4331 9 6 1.4340 7.2858 0.5281 10 6 2.3545 8.4723 0.6545 11 1 3.4245 8.3266 0.6664 12 6 1.8305 9.7436 0.7560 13 7 0.5274 9.9208 0.7421 14 14 2.9715 11.2142 0.9135 15 1 3.3059 11.7284 -0.4390 16 1 2.2983 12.2815 1.6963 17 1 4.2175 10.8018 1.6083 18 6 2.2605 -1.3052 0.0006 19 6 1.4415 -2.5937 -0.0993 20 6 2.1053 -2.2099 1.2246 21 1 -0.3634 -1.0249 0.0756 22 1 -0.3633 0.5779 0.8499 23 1 -0.3633 0.4471 -0.9253 24 1 3.2502 1.1537 -0.0700 25 1 0.7221 4.9061 -0.5946 26 1 0.6798 4.7482 1.1778 27 1 2.8719 5.8979 1.3317 28 1 2.9135 6.0553 -0.4409 29 1 0.8259 7.3922 -0.3704 30 1 0.7848 7.2343 1.4021 31 1 0.1589 10.8152 0.8131 32 1 3.2328 -1.2869 -0.4918 33 1 0.3578 -2.4975 -0.1658 34 1 1.8750 -3.4235 -0.6576 35 1 2.9755 -2.7871 1.5374 36 1 1.4587 -1.8609 2.0297 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919543813.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:27 Heat of formation + Delta-G solvation = -82.243245 kcal Electronic energy + Delta-G solvation = -15949.335958 eV Core-core repulsion = 13205.567093 eV Total energy + Delta-G solvation = -2743.768865 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.47557 -39.20673 -37.75897 -35.93694 -34.30328 -33.66886 -29.62735 -28.59566 -25.94539 -24.66075 -23.22669 -22.18413 -21.99135 -19.46027 -18.86094 -18.39791 -17.63182 -17.08382 -16.77812 -16.47027 -15.75068 -15.37504 -14.62205 -14.41587 -14.10356 -14.04399 -13.69130 -13.60820 -13.11519 -12.82184 -12.59962 -12.51520 -12.36780 -12.19048 -12.04937 -11.81251 -11.64433 -11.41792 -11.36182 -11.30614 -11.04244 -10.58545 -10.05173 -8.22867 -6.34719 0.04897 1.40792 1.42652 1.53846 1.72362 1.87410 2.40936 2.96102 3.10885 3.48449 3.78309 3.90472 3.98390 4.01261 4.05917 4.10888 4.17906 4.39862 4.60157 4.69595 4.77811 4.80199 4.87649 4.97941 5.04861 5.07178 5.09051 5.26306 5.31834 5.42007 5.46097 5.58392 5.61820 5.78577 6.17959 6.74270 6.81404 7.34868 8.89545 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.077050 B = 0.003228 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.315385 B = 8672.355322 C = 8921.241716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.024 3.976 3 C -0.222 4.222 4 C 0.481 3.519 5 O -0.540 6.540 6 O -0.360 6.360 7 C 0.079 3.921 8 C -0.094 4.094 9 C 0.026 3.974 10 C -0.544 4.544 11 H 0.065 0.935 12 C -0.002 4.002 13 N -0.934 5.934 14 Si 0.970 3.030 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.261 1.261 18 C -0.149 4.149 19 C -0.166 4.166 20 C -0.158 4.158 21 H 0.088 0.912 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.158 0.842 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.066 0.934 29 H -0.003 1.003 30 H -0.003 1.003 31 H 0.265 0.735 32 H 0.134 0.866 33 H 0.105 0.895 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.240 -25.397 -1.148 25.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.023 3.977 3 C -0.240 4.240 4 C 0.331 3.669 5 O -0.434 6.434 6 O -0.277 6.277 7 C 0.006 3.994 8 C -0.132 4.132 9 C -0.011 4.011 10 C -0.582 4.582 11 H 0.083 0.917 12 C -0.200 4.200 13 N -0.574 5.574 14 Si 0.794 3.206 15 H -0.196 1.196 16 H -0.207 1.207 17 H -0.185 1.185 18 C -0.167 4.167 19 C -0.203 4.203 20 C -0.195 4.195 21 H 0.106 0.894 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.176 0.824 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.074 0.926 32 H 0.152 0.848 33 H 0.123 0.877 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.762 -25.222 -1.137 25.527 hybrid contribution -0.080 1.394 0.045 1.397 sum 3.682 -23.828 -1.092 24.136 Atomic orbital electron populations 1.21225 0.91120 1.03071 1.03133 1.22178 0.96157 0.93291 0.86068 1.21691 1.01555 0.87300 1.13488 1.22167 0.86305 0.85748 0.72727 1.90813 1.16230 1.88213 1.48112 1.86569 1.41976 1.15752 1.83359 1.23091 0.93927 0.80884 1.01516 1.21459 0.97955 0.91375 1.02364 1.18931 0.94996 0.91732 0.95421 1.21627 0.93832 0.92292 1.50469 0.91680 1.26029 0.96765 1.02556 0.94607 1.70100 1.12827 1.23229 1.51275 0.85366 0.78747 0.77950 0.78504 1.19647 1.20718 1.18535 1.21326 1.01391 0.87645 1.06292 1.23277 1.00043 0.96619 1.00335 1.23107 1.04124 1.00943 0.91287 0.89392 0.91336 0.90954 0.82439 0.92055 0.92068 0.91568 0.91534 0.98505 0.98488 0.92630 0.84805 0.87695 0.86363 0.86292 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.22 71.24 0.59 -2.10 16 2 C 0.02 0.46 5.81 -17.60 -0.10 0.36 16 3 C -0.22 -5.23 9.79 23.40 0.23 -5.00 16 4 C 0.48 15.72 7.86 70.10 0.55 16.28 16 5 O -0.54 -19.86 12.90 19.72 0.25 -19.61 16 6 O -0.36 -12.93 10.23 -57.07 -0.58 -13.51 16 7 C 0.08 3.14 5.48 71.98 0.39 3.54 16 8 C -0.09 -4.08 5.53 30.59 0.17 -3.91 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 11 H 0.06 3.57 7.74 -2.91 -0.02 3.55 16 12 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 13 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 14 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 18 C -0.15 -1.87 6.01 -11.54 -0.07 -1.94 16 19 C -0.17 -1.52 9.86 30.59 0.30 -1.21 16 20 C -0.16 -1.57 10.23 30.59 0.31 -1.26 16 21 H 0.09 1.28 5.44 -2.39 -0.01 1.27 16 22 H 0.07 1.73 6.84 -2.38 -0.02 1.71 16 23 H 0.07 1.72 7.58 -2.39 -0.02 1.70 16 24 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 25 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 26 H 0.06 2.45 8.14 -2.38 -0.02 2.43 16 27 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.07 2.79 8.14 -2.38 -0.02 2.77 16 29 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 30 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 31 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 32 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.10 0.95 5.90 -2.39 -0.01 0.94 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -68.11 306.88 6.25 -61.86 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: 1.05 Total: 6.54 kcal Atomic # 6 Polarization: -27.72 SS G_CDS: 3.22 Total: -24.50 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.28 Total: -57.33 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.33 Total: -33.12 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -68.11 6.25 -61.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919543813.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.379 kcal (2) G-P(sol) polarization free energy of solvation -68.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds