Wall clock time and date at job start Sun Mar 29 2020 22:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.34796 * 117.00201 * 180.02562 * 12 11 10 14 14 O 1.21529 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.46948 * 120.00174 * 180.02562 * 13 12 11 16 16 C 1.33085 * 120.00230 * 179.97438 * 15 13 12 17 17 C 1.51450 * 126.33693 * 359.68837 * 16 15 13 18 18 C 1.54278 * 106.84911 * 180.24079 * 17 16 15 19 19 C 1.54983 * 103.66017 * 23.48248 * 18 17 16 20 20 C 1.51838 * 126.34290 * 179.97438 * 16 15 13 21 21 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 26 26 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 27 27 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 28 28 H 1.08003 * 119.99815 * 359.97438 * 15 13 12 29 29 H 1.08997 * 109.98144 * 299.72713 * 17 16 15 30 30 H 1.08996 * 109.98249 * 61.03134 * 17 16 15 31 31 H 1.08993 * 110.79875 * 264.86150 * 18 17 16 32 32 H 1.08995 * 110.43025 * 141.92642 * 18 17 16 33 33 H 1.08999 * 110.83728 * 204.48976 * 19 18 17 34 34 H 1.09000 * 110.83276 * 80.90987 * 19 18 17 35 35 H 1.09007 * 110.44332 * 274.92504 * 20 16 15 36 36 H 1.09001 * 110.44562 * 37.32317 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 8 2.4237 -6.0908 0.0049 13 6 1.9085 -7.3364 0.0060 14 8 0.7037 -7.4956 0.0070 15 6 2.8036 -8.5018 0.0070 16 6 2.2950 -9.7316 0.0085 17 6 0.8247 -10.0946 0.0160 18 6 0.7444 -11.6353 0.0212 19 6 2.1074 -12.0708 0.6167 20 6 3.0813 -11.0305 0.0092 21 1 -0.4851 0.8400 -0.0004 22 1 0.6240 -2.5576 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8719 -3.6052 -0.8873 26 1 0.8539 -5.0438 0.8948 27 1 0.8532 -5.0459 -0.8851 28 1 3.8744 -8.3603 0.0065 29 1 0.3461 -9.6916 0.9086 30 1 0.3393 -9.7013 -0.8772 31 1 0.6288 -12.0202 -0.9919 32 1 -0.0756 -11.9714 0.6557 33 1 2.3670 -13.0791 0.2943 34 1 2.0950 -12.0016 1.7045 35 1 3.3527 -11.3118 -1.0084 36 1 3.9737 -10.9351 0.6277 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919598055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:52 Heat of formation + Delta-G solvation = -105.255833 kcal Electronic energy + Delta-G solvation = -16014.616004 eV Core-core repulsion = 13269.849238 eV Total energy + Delta-G solvation = -2744.766766 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13079 -38.33926 -36.21591 -33.93744 -32.18835 -31.56117 -29.11368 -27.34390 -25.80414 -23.27126 -21.37325 -21.07385 -20.31598 -18.49916 -17.38912 -16.42615 -16.22243 -15.92147 -15.65784 -14.89810 -14.44559 -13.99056 -13.62010 -13.17190 -12.86197 -12.36746 -12.16494 -12.01523 -11.86462 -11.56620 -11.47178 -11.29885 -10.96505 -10.91277 -10.61808 -10.58670 -10.31056 -10.13637 -9.69021 -9.47096 -9.34577 -9.14070 -8.37053 -6.01827 -4.04756 1.11307 3.01280 3.09036 3.32257 3.38251 3.42082 4.18349 4.32818 4.45384 4.69273 4.83727 5.00601 5.11604 5.22893 5.26038 5.34084 5.42961 5.54260 5.63565 5.64528 5.69611 5.75156 5.89549 6.00365 6.05763 6.18817 6.23231 6.58443 6.60251 6.90828 7.02927 7.62694 7.74103 7.96685 8.06071 8.38297 9.01597 9.59401 11.09697 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.083273 B = 0.003261 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.161159 B = 8583.713727 C = 8858.083864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.356 6.356 13 C 0.490 3.510 14 O -0.516 6.516 15 C -0.194 4.194 16 C -0.028 4.028 17 C -0.100 4.100 18 C -0.129 4.129 19 C -0.125 4.125 20 C -0.100 4.100 21 H 0.261 0.739 22 H 0.019 0.981 23 H 0.019 0.981 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.141 0.859 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -23.320 0.204 23.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.147 4.147 11 C -0.004 4.004 12 O -0.273 6.273 13 C 0.337 3.663 14 O -0.408 6.408 15 C -0.213 4.213 16 C -0.029 4.029 17 C -0.136 4.136 18 C -0.167 4.167 19 C -0.162 4.162 20 C -0.137 4.137 21 H 0.071 0.929 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.533 -23.193 0.211 23.633 hybrid contribution 0.303 1.109 -0.027 1.150 sum 4.835 -22.084 0.184 22.608 Atomic orbital electron populations 1.69967 1.06091 1.26741 1.50625 1.25034 0.94881 0.99365 0.95225 0.86542 0.79810 0.83227 0.78128 1.20616 1.21196 1.19806 1.21186 0.93136 0.90707 1.50898 0.92425 1.19053 0.93852 0.90766 0.97661 1.21761 0.99912 0.91065 1.01933 1.23462 0.91219 0.83650 1.02031 1.86584 1.42234 1.15018 1.83416 1.21354 0.87404 0.84203 0.73345 1.90815 1.16550 1.87065 1.46341 1.21279 0.99878 0.89044 1.11123 1.23031 0.97305 0.93610 0.88950 1.21403 0.92911 0.95073 1.04252 1.22473 0.97541 0.95373 1.01285 1.22543 0.94775 0.98305 1.00578 1.21612 0.98181 0.91615 1.02301 0.92905 0.96243 0.96241 0.92174 0.92173 0.91608 0.91619 0.84136 0.89274 0.89405 0.91261 0.91104 0.90875 0.90989 0.89183 0.90073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.34 5.53 -26.73 -0.15 -2.49 16 11 C 0.07 1.35 5.48 37.16 0.20 1.55 16 12 O -0.36 -6.38 10.23 -40.76 -0.42 -6.80 16 13 C 0.49 8.00 7.90 34.26 0.27 8.27 16 14 O -0.52 -9.42 13.90 -19.29 -0.27 -9.69 16 15 C -0.19 -2.36 10.06 -37.85 -0.38 -2.74 16 16 C -0.03 -0.29 6.16 -100.21 -0.62 -0.91 16 17 C -0.10 -1.06 4.81 -26.85 -0.13 -1.19 16 18 C -0.13 -0.97 6.88 -25.01 -0.17 -1.14 16 19 C -0.12 -0.79 6.94 -24.68 -0.17 -0.97 16 20 C -0.10 -0.71 6.64 -26.31 -0.17 -0.88 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.14 1.40 8.06 -52.48 -0.42 0.98 16 29 H 0.09 1.07 7.67 -51.93 -0.40 0.67 16 30 H 0.09 1.05 7.68 -51.93 -0.40 0.65 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 305.38 15.07 4.60 4.60 Total: -1.00 -31.57 305.38 -8.07 -39.64 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -5.83 Total: -4.39 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -1.87 Total: -13.71 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.69 Total: -16.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.57 -8.07 -39.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919598055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.615 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds