Wall clock time and date at job start Sun Mar 29 2020 22:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99801 * 3 2 1 5 5 H 1.48495 * 109.46931 * 29.99815 * 3 2 1 6 6 H 1.48500 * 109.46738 * 150.00057 * 3 2 1 7 7 C 1.37876 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46953 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46623 * 179.97438 * 10 9 7 12 12 O 1.45200 * 109.47003 * 179.97438 * 11 10 9 13 13 C 1.34796 * 117.00201 * 180.02562 * 12 11 10 14 14 O 1.21529 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.46948 * 120.00174 * 180.02562 * 13 12 11 16 16 C 1.33085 * 120.00230 * 179.97438 * 15 13 12 17 17 C 1.51450 * 126.33693 * 359.68837 * 16 15 13 18 18 C 1.54278 * 106.84911 * 180.24079 * 17 16 15 19 19 C 1.54983 * 103.66017 * 23.48248 * 18 17 16 20 20 C 1.51838 * 126.34290 * 179.97438 * 16 15 13 21 21 H 0.97000 * 120.00540 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.46974 * 59.99987 * 9 7 2 23 23 H 1.09001 * 109.46547 * 300.00078 * 9 7 2 24 24 H 1.09000 * 109.47486 * 60.00062 * 10 9 7 25 25 H 1.09001 * 109.47362 * 299.99339 * 10 9 7 26 26 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 27 27 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 28 28 H 1.08003 * 119.99815 * 359.97438 * 15 13 12 29 29 H 1.08997 * 109.98144 * 299.72713 * 17 16 15 30 30 H 1.08996 * 109.98249 * 61.03134 * 17 16 15 31 31 H 1.08993 * 110.79875 * 264.86150 * 18 17 16 32 32 H 1.08995 * 110.43025 * 141.92642 * 18 17 16 33 33 H 1.08999 * 110.83728 * 204.48976 * 19 18 17 34 34 H 1.09000 * 110.83276 * 80.90987 * 19 18 17 35 35 H 1.09007 * 110.44332 * 274.92504 * 20 16 15 36 36 H 1.09001 * 110.44562 * 37.32317 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0046 12 8 2.4237 -6.0908 0.0049 13 6 1.9085 -7.3364 0.0060 14 8 0.7037 -7.4956 0.0070 15 6 2.8036 -8.5018 0.0070 16 6 2.2950 -9.7316 0.0085 17 6 0.8247 -10.0946 0.0160 18 6 0.7444 -11.6353 0.0212 19 6 2.1074 -12.0708 0.6167 20 6 3.0813 -11.0305 0.0092 21 1 -0.4851 0.8400 -0.0004 22 1 0.6240 -2.5576 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.8719 -3.6036 0.8927 25 1 2.8719 -3.6052 -0.8873 26 1 0.8539 -5.0438 0.8948 27 1 0.8532 -5.0459 -0.8851 28 1 3.8744 -8.3603 0.0065 29 1 0.3461 -9.6916 0.9086 30 1 0.3393 -9.7013 -0.8772 31 1 0.6288 -12.0202 -0.9919 32 1 -0.0756 -11.9714 0.6557 33 1 2.3670 -13.0791 0.2943 34 1 2.0950 -12.0016 1.7045 35 1 3.3527 -11.3118 -1.0084 36 1 3.9737 -10.9351 0.6277 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919598055.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:51 Heat of formation + Delta-G solvation = -122.039401 kcal Electronic energy + Delta-G solvation = -16015.343794 eV Core-core repulsion = 13269.849238 eV Total energy + Delta-G solvation = -2745.494556 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.136 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.43301 -39.18836 -37.59900 -35.93065 -33.74430 -32.90163 -29.78041 -29.15691 -26.92961 -25.07015 -22.58973 -22.18674 -21.70504 -19.49089 -18.82121 -18.35447 -17.64023 -17.05085 -16.51863 -16.46645 -15.79789 -15.59546 -14.71935 -14.28345 -14.07946 -13.91681 -13.74835 -13.50243 -13.03162 -12.82553 -12.55726 -12.51858 -12.32871 -12.08209 -12.03340 -11.95442 -11.66510 -11.50121 -11.41911 -11.33563 -11.15576 -10.58683 -10.25283 -8.22951 -6.34896 0.10092 1.40721 1.42669 1.53881 1.72077 1.91723 2.40871 3.10767 3.37950 3.67557 3.90199 3.97585 4.05228 4.12231 4.18233 4.38051 4.40645 4.46329 4.67656 4.77299 4.80698 4.89271 5.00310 5.03958 5.05766 5.08885 5.18979 5.33310 5.34467 5.44593 5.46485 5.55410 5.61419 5.78336 6.17650 6.73803 6.81204 7.34715 8.89470 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.083273 B = 0.003261 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 336.161159 B = 8583.713727 C = 8858.083864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.094 4.094 11 C 0.079 3.921 12 O -0.359 6.359 13 C 0.483 3.517 14 O -0.546 6.546 15 C -0.216 4.216 16 C -0.011 4.011 17 C -0.109 4.109 18 C -0.125 4.125 19 C -0.120 4.120 20 C -0.097 4.097 21 H 0.265 0.735 22 H -0.004 1.004 23 H -0.004 1.004 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.166 0.834 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.109 0.891 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.143 -24.760 0.166 25.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.084 0.916 9 C -0.011 4.011 10 C -0.131 4.131 11 C 0.006 3.994 12 O -0.275 6.275 13 C 0.332 3.668 14 O -0.439 6.439 15 C -0.234 4.234 16 C -0.011 4.011 17 C -0.146 4.146 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.133 4.133 21 H 0.074 0.926 22 H 0.015 0.985 23 H 0.015 0.985 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.183 0.817 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.641 -24.657 0.172 25.537 hybrid contribution -0.430 1.440 -0.019 1.503 sum 6.211 -23.217 0.154 24.034 Atomic orbital electron populations 1.70103 1.07931 1.27991 1.51423 1.26037 0.95813 1.03609 0.94518 0.85359 0.78626 0.77958 0.78579 1.19646 1.20725 1.18517 1.21628 0.93770 0.91854 1.50971 0.91643 1.18933 0.94242 0.92504 0.95414 1.21461 0.98742 0.90394 1.02523 1.23090 0.90984 0.83781 1.01580 1.86567 1.41648 1.15440 1.83878 1.22222 0.87855 0.84352 0.72370 1.90804 1.17946 1.87152 1.47980 1.21344 1.00315 0.87730 1.14058 1.23476 0.97727 0.94545 0.85379 1.21474 0.93091 0.97636 1.02363 1.22472 0.98871 0.92589 1.02303 1.22577 0.93358 0.99261 1.00566 1.21752 0.98417 0.89261 1.03862 0.92632 0.98528 0.98531 0.91504 0.91474 0.92141 0.92139 0.81683 0.91276 0.91318 0.90203 0.90616 0.88510 0.90945 0.87267 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.70 13.29 21.45 0.28 -57.41 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 3 Si 0.97 44.54 29.54 68.60 2.03 46.57 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 8 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 9 C 0.03 1.42 4.97 29.85 0.15 1.57 16 10 C -0.09 -4.07 5.53 30.60 0.17 -3.90 16 11 C 0.08 3.16 5.48 71.98 0.39 3.55 16 12 O -0.36 -12.91 10.23 -57.08 -0.58 -13.50 16 13 C 0.48 15.95 7.90 70.10 0.55 16.50 16 14 O -0.55 -20.66 13.90 19.74 0.27 -20.38 16 15 C -0.22 -5.01 10.06 23.40 0.24 -4.78 16 16 C -0.01 -0.20 6.16 -17.00 -0.10 -0.31 16 17 C -0.11 -2.27 4.81 30.52 0.15 -2.13 16 18 C -0.12 -1.63 6.88 31.71 0.22 -1.42 16 19 C -0.12 -1.13 6.94 31.92 0.22 -0.90 16 20 C -0.10 -1.02 6.64 30.86 0.21 -0.81 16 21 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 22 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 23 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 25 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 26 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.17 2.93 8.06 -2.91 -0.02 2.91 16 29 H 0.07 1.72 7.67 -2.39 -0.02 1.70 16 30 H 0.07 1.70 7.68 -2.39 -0.02 1.68 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -69.10 305.38 5.92 -63.18 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: 1.03 Total: 5.02 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: 2.88 Total: -23.48 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: 0.28 Total: -57.41 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.31 Total: -33.88 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -69.10 5.92 -63.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919598055.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.862 kcal (2) G-P(sol) polarization free energy of solvation -69.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds