Wall clock time and date at job start Sun Mar 29 2020 22:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47346 * 283.26757 * 3 2 1 5 5 H 1.08997 * 109.46969 * 305.00549 * 4 3 2 6 6 O 1.42903 * 109.46498 * 65.00323 * 4 3 2 7 7 C 1.53001 * 109.47215 * 185.00222 * 4 3 2 8 8 N 1.46505 * 109.46831 * 180.02562 * 7 4 3 9 9 C 1.36934 * 119.99627 * 269.99617 * 8 7 4 10 10 H 1.08008 * 119.99722 * 141.44658 * 9 8 7 11 11 C 1.38809 * 120.00316 * 321.45552 * 9 8 7 12 12 N 1.31623 * 120.00084 * 339.52378 * 11 9 8 13 13 Si 1.86802 * 120.00425 * 159.52537 * 11 9 8 14 14 H 1.48505 * 109.47033 * 59.99652 * 13 11 9 15 15 H 1.48498 * 109.47238 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47035 * 300.00139 * 13 11 9 17 17 C 1.46494 * 120.00004 * 89.99929 * 8 7 4 18 18 C 1.55243 * 110.46679 * 239.51604 * 17 8 7 19 19 C 1.54891 * 102.58629 * 203.39493 * 18 17 8 20 20 C 1.54273 * 104.31122 * 37.93619 * 19 18 17 21 21 C 1.53870 * 106.59964 * 336.31940 * 20 19 18 22 22 H 1.09007 * 109.47014 * 163.26939 * 3 2 1 23 23 H 1.08997 * 109.47422 * 43.27265 * 3 2 1 24 24 H 0.96697 * 114.00381 * 59.99997 * 6 4 3 25 25 H 1.08992 * 109.47313 * 60.00345 * 7 4 3 26 26 H 1.09004 * 109.46773 * 299.99925 * 7 4 3 27 27 H 0.96998 * 120.00128 * 180.02562 * 12 11 9 28 28 H 1.08996 * 110.43721 * 2.16834 * 17 8 7 29 29 H 1.08999 * 110.89647 * 85.10837 * 18 17 8 30 30 H 1.08996 * 110.76418 * 321.62567 * 18 17 8 31 31 H 1.08998 * 110.48856 * 279.18773 * 19 18 17 32 32 H 1.09004 * 110.48568 * 156.67409 * 19 18 17 33 33 H 1.08996 * 110.03378 * 95.60916 * 20 19 18 34 34 H 1.08997 * 110.02640 * 216.98769 * 20 19 18 35 35 H 1.09002 * 110.03166 * 119.28615 * 21 20 19 36 36 H 1.09001 * 110.03436 * 240.67452 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1182 -0.3302 1.4040 5 1 2.6832 0.3652 2.1218 6 8 2.7407 -1.6655 1.7455 7 6 4.6429 -0.2075 1.4346 8 7 5.1314 -0.5249 2.7789 9 6 5.2618 0.4686 3.7122 10 1 5.0071 0.2769 4.7441 11 6 5.7210 1.7222 3.3320 12 7 6.4002 1.8629 2.2134 13 14 5.3751 3.2095 4.4080 14 1 5.9747 2.9997 5.7503 15 1 5.9685 4.4199 3.7850 16 1 3.9076 3.3913 4.5443 17 6 5.4805 -1.9050 3.1244 18 6 4.6153 -2.4022 4.3137 19 6 5.4826 -3.5385 4.9102 20 6 6.9298 -3.0184 4.7869 21 6 6.9285 -1.9799 3.6515 22 1 2.9708 0.9851 -0.2959 23 1 2.9717 -0.7474 -0.7044 24 1 3.0932 -2.3389 1.1477 25 1 4.9308 0.8110 1.1741 26 1 5.0778 -0.9029 0.7167 27 1 6.7215 2.7388 1.9480 28 1 5.3549 -2.5571 2.2602 29 1 3.6588 -2.7898 3.9632 30 1 4.4669 -1.6060 5.0430 31 1 5.3568 -4.4562 4.3357 32 1 5.2253 -3.7058 5.9561 33 1 7.2391 -2.5499 5.7212 34 1 7.6022 -3.8403 4.5413 35 1 7.2370 -1.0072 4.0348 36 1 7.6007 -2.2972 2.8544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929684333.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:59:03 Heat of formation + Delta-G solvation = -38.591984 kcal Electronic energy + Delta-G solvation = -17643.039796 eV Core-core repulsion = 14933.456542 eV Total energy + Delta-G solvation = -2709.583254 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.60007 -38.42085 -37.05273 -35.64658 -32.91624 -32.16149 -29.22276 -28.56292 -27.65820 -24.68769 -22.35032 -21.16384 -20.66720 -19.07754 -17.74835 -17.11295 -16.72842 -16.40090 -16.28024 -15.80742 -15.35783 -14.86371 -14.58820 -14.25260 -13.96114 -13.60919 -13.52493 -13.13160 -12.81985 -12.70300 -12.53566 -12.22939 -12.21672 -11.82541 -11.81148 -11.64737 -11.56285 -11.49022 -11.13112 -11.03615 -10.68429 -10.39901 -8.32723 -7.69368 -5.31244 1.47455 1.51819 1.56395 1.83002 1.88343 2.56862 3.12398 3.33954 3.69661 3.88827 4.10908 4.13369 4.26988 4.36910 4.49194 4.76611 4.80331 4.85175 4.87409 4.92953 5.03132 5.06513 5.09362 5.31421 5.33739 5.45261 5.52095 5.68302 5.71855 5.78184 5.80885 5.94429 6.61361 6.67533 7.14925 7.33423 8.04631 8.53779 9.21892 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.015086 B = 0.010952 C = 0.007238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.633925 B = 2555.913736 C = 3867.692754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.243 3.757 3 C -0.051 4.051 4 C 0.104 3.896 5 H 0.062 0.938 6 O -0.567 6.567 7 C 0.123 3.877 8 N -0.581 5.581 9 C -0.244 4.244 10 H 0.041 0.959 11 C -0.025 4.025 12 N -0.908 5.908 13 Si 0.935 3.065 14 H -0.286 1.286 15 H -0.292 1.292 16 H -0.286 1.286 17 C 0.176 3.824 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.115 4.115 21 C -0.133 4.133 22 H 0.133 0.867 23 H 0.148 0.852 24 H 0.380 0.620 25 H 0.077 0.923 26 H 0.054 0.946 27 H 0.251 0.749 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.181 -8.224 -3.209 8.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.187 5.187 2 C -0.073 4.073 3 C -0.091 4.091 4 C 0.041 3.959 5 H 0.081 0.919 6 O -0.374 6.374 7 C -0.004 4.004 8 N -0.299 5.299 9 C -0.375 4.375 10 H 0.059 0.941 11 C -0.223 4.223 12 N -0.552 5.552 13 Si 0.765 3.235 14 H -0.212 1.212 15 H -0.218 1.218 16 H -0.212 1.212 17 C 0.069 3.931 18 C -0.164 4.164 19 C -0.153 4.153 20 C -0.153 4.153 21 C -0.173 4.173 22 H 0.151 0.849 23 H 0.166 0.834 24 H 0.228 0.772 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.091 0.909 35 H 0.057 0.943 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.723 -7.761 -2.811 8.432 hybrid contribution 0.608 1.132 0.360 1.335 sum -1.115 -6.629 -2.451 7.155 Atomic orbital electron populations 1.81154 1.14933 1.11531 1.11064 1.29693 0.95732 0.90900 0.90977 1.20301 0.79655 1.08238 1.00920 1.22439 0.97232 0.83787 0.92406 0.91942 1.86604 1.76759 1.16142 1.57851 1.21541 0.89680 1.02836 0.86376 1.43810 1.73033 1.02783 1.10276 1.18857 1.36162 0.91223 0.91226 0.94139 1.25539 0.97479 1.00727 0.98508 1.70038 1.36916 1.22760 1.25482 0.85869 0.77694 0.80792 0.79177 1.21204 1.21777 1.21247 1.21401 0.91073 0.85362 0.95223 1.22781 0.98423 0.96738 0.98496 1.22273 0.94479 0.98073 1.00495 1.22030 0.97439 0.98036 0.97819 1.22477 0.99066 0.98205 0.97532 0.84909 0.83415 0.77195 0.90481 0.92734 0.93976 0.91113 0.92025 0.94727 0.90388 0.92093 0.93511 0.90927 0.94265 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -17.77 18.54 20.00 0.37 -17.40 16 2 C 0.24 7.00 15.19 89.44 1.36 8.36 16 3 C -0.05 -1.11 5.39 28.79 0.16 -0.96 16 4 C 0.10 3.25 3.21 30.60 0.10 3.35 16 5 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 6 O -0.57 -16.99 12.13 -148.98 -1.81 -18.80 16 7 C 0.12 4.50 4.97 86.38 0.43 4.93 16 8 N -0.58 -25.00 2.38 -671.39 -1.60 -26.60 16 9 C -0.24 -12.27 7.75 84.03 0.65 -11.61 16 10 H 0.04 2.17 6.69 -2.91 -0.02 2.15 16 11 C -0.02 -1.27 4.97 84.86 0.42 -0.85 16 12 N -0.91 -47.68 11.48 21.65 0.25 -47.44 16 13 Si 0.93 42.82 29.60 68.60 2.03 44.85 16 14 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 15 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 17 C 0.18 6.50 2.84 46.19 0.13 6.63 16 18 C -0.12 -4.38 6.47 32.01 0.21 -4.17 16 19 C -0.12 -3.25 6.82 31.67 0.22 -3.04 16 20 C -0.12 -3.48 6.80 31.32 0.21 -3.27 16 21 C -0.13 -4.99 6.41 31.32 0.20 -4.79 16 22 H 0.13 2.61 8.14 -2.38 -0.02 2.59 16 23 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.38 7.96 9.05 -74.06 -0.67 7.29 16 25 H 0.08 3.32 5.55 -2.39 -0.01 3.31 16 26 H 0.05 1.73 7.93 -2.39 -0.02 1.71 16 27 H 0.25 12.95 8.31 -92.71 -0.77 12.18 16 28 H 0.07 2.29 7.84 -2.39 -0.02 2.27 16 29 H 0.06 2.10 7.85 -2.39 -0.02 2.08 16 30 H 0.03 1.42 6.59 -2.39 -0.02 1.41 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.80 6.94 -2.39 -0.02 1.78 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -62.35 298.14 3.73 -58.62 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.40 Total: 12.16 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: 4.08 Total: -5.41 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -0.98 Total: -91.43 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -1.81 Total: -18.80 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -62.35 3.73 -58.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929684333.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.025 kcal (2) G-P(sol) polarization free energy of solvation -62.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds