Wall clock time and date at job start Sun Mar 29 2020 22:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47416 * 2 1 4 4 C 1.50703 * 109.47352 * 120.00944 * 2 1 3 5 5 C 1.38752 * 120.38363 * 330.85886 * 4 2 1 6 6 C 1.38506 * 118.45032 * 179.72795 * 5 4 2 7 7 C 1.38569 * 119.13390 * 0.49514 * 6 5 4 8 8 F 1.35092 * 119.64532 * 179.77022 * 7 6 5 9 9 N 1.32024 * 120.69869 * 359.49465 * 7 6 5 10 10 C 1.31937 * 121.69108 * 0.25245 * 9 7 6 11 11 N 1.46906 * 109.46698 * 240.00588 * 2 1 3 12 12 C 1.46894 * 111.00205 * 307.98100 * 11 2 1 13 13 C 1.46898 * 110.99967 * 71.93894 * 11 2 1 14 14 C 1.50703 * 109.47090 * 169.99964 * 13 11 2 15 15 H 1.08010 * 119.99862 * 359.97438 * 14 13 11 16 16 C 1.37872 * 119.99996 * 179.97438 * 14 13 11 17 17 N 1.31522 * 120.00110 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 120.00226 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47205 * 89.99923 * 18 16 14 20 20 H 1.48496 * 109.47189 * 209.99957 * 18 16 14 21 21 H 1.48504 * 109.47035 * 330.00028 * 18 16 14 22 22 H 1.08997 * 109.46825 * 299.99552 * 1 2 3 23 23 H 1.09001 * 109.46925 * 59.99186 * 1 2 3 24 24 H 1.09000 * 109.47621 * 179.97438 * 1 2 3 25 25 H 1.08003 * 120.77304 * 359.97438 * 5 4 2 26 26 H 1.07996 * 120.42824 * 180.26534 * 6 5 4 27 27 H 1.08004 * 119.59781 * 180.02562 * 10 9 7 28 28 H 1.09001 * 109.47151 * 66.27740 * 12 11 2 29 29 H 1.09000 * 109.47690 * 186.27749 * 12 11 2 30 30 H 1.09008 * 109.47112 * 306.28206 * 12 11 2 31 31 H 1.09000 * 109.47157 * 289.99652 * 13 11 2 32 32 H 1.08993 * 109.47406 * 50.00149 * 13 11 2 33 33 H 0.96991 * 120.00104 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7106 1.2304 5 6 1.2807 -0.7111 2.3966 6 6 1.7780 -1.3816 3.5019 7 6 3.0062 -2.0164 3.4096 8 9 3.5032 -2.6694 4.4827 9 7 3.6934 -1.9943 2.2824 10 6 3.2460 -1.3693 1.2101 11 7 2.0196 -0.6924 -1.1996 12 6 1.3993 -2.0173 -1.3327 13 6 1.7941 0.1179 -2.4040 14 6 2.5201 -0.5024 -3.5699 15 1 3.0922 -1.4079 -3.4300 16 6 2.4541 0.0858 -4.8150 17 7 3.0881 -0.4552 -5.8325 18 14 1.4641 1.6513 -5.0572 19 1 2.3360 2.8299 -4.8207 20 1 0.9386 1.6949 -6.4454 21 1 0.3307 1.6736 -4.0979 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 0.3281 -0.2039 2.4403 26 1 1.2174 -1.4061 4.4246 27 1 3.8359 -1.3731 0.3054 28 1 0.3321 -1.9016 -1.5219 29 1 1.8596 -2.5523 -2.1634 30 1 1.5459 -2.5814 -0.4115 31 1 0.7266 0.1578 -2.6204 32 1 2.1693 1.1276 -2.2380 33 1 3.0413 -0.0416 -6.7085 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929809505.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:05 Heat of formation + Delta-G solvation = -15.595170 kcal Electronic energy + Delta-G solvation = -16741.634500 eV Core-core repulsion = 13909.588158 eV Total energy + Delta-G solvation = -2832.046342 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.118 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.00911 -41.38206 -38.85298 -35.02608 -33.93764 -32.50642 -30.21125 -29.53258 -27.05949 -25.20277 -24.63555 -22.96122 -20.82574 -19.15009 -18.94107 -18.15411 -17.14963 -16.91749 -16.48775 -16.09963 -15.72749 -15.27438 -14.84055 -14.76398 -14.35991 -14.15678 -14.11892 -13.74547 -13.33749 -13.04291 -12.80574 -12.75743 -12.31143 -12.15654 -11.84754 -11.77584 -11.44083 -10.92380 -10.74294 -10.64841 -9.78364 -8.98627 -8.24244 -6.27670 -0.06534 0.17872 1.38572 1.39705 1.49756 2.37770 2.59420 2.62742 3.09307 3.18167 3.54037 3.74926 3.99059 4.04448 4.25403 4.35494 4.41737 4.57319 4.66913 4.80385 4.85209 4.87931 4.91032 4.98365 5.09780 5.24052 5.27233 5.34707 5.57461 5.68722 6.00681 6.34863 6.63380 6.73212 6.79999 7.36006 8.92540 Molecular weight = 238.12amu Principal moments of inertia in cm(-1) A = 0.045251 B = 0.005644 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.627706 B = 4959.685562 C = 5314.132903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.117 3.883 3 H 0.098 0.902 4 C -0.128 4.128 5 C -0.037 4.037 6 C -0.178 4.178 7 C 0.271 3.729 8 F -0.125 7.125 9 N -0.549 5.549 10 C 0.144 3.856 11 N -0.540 5.540 12 C 0.045 3.955 13 C 0.174 3.826 14 C -0.515 4.515 15 H 0.036 0.964 16 C 0.006 3.994 17 N -0.952 5.952 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.287 1.287 21 H -0.244 1.244 22 H 0.095 0.905 23 H 0.051 0.949 24 H 0.062 0.938 25 H 0.183 0.817 26 H 0.181 0.819 27 H 0.159 0.841 28 H 0.030 0.970 29 H 0.044 0.956 30 H 0.063 0.937 31 H -0.002 1.002 32 H 0.031 0.969 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.899 2.682 18.483 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.008 3.992 3 H 0.116 0.884 4 C -0.130 4.130 5 C -0.063 4.063 6 C -0.199 4.199 7 C 0.118 3.882 8 F -0.104 7.104 9 N -0.264 5.264 10 C -0.012 4.012 11 N -0.263 5.263 12 C -0.104 4.104 13 C 0.047 3.953 14 C -0.554 4.554 15 H 0.054 0.946 16 C -0.191 4.191 17 N -0.593 5.593 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.167 1.167 22 H 0.114 0.886 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.201 0.799 26 H 0.199 0.801 27 H 0.177 0.823 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.016 0.984 32 H 0.049 0.951 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.532 2.168 18.375 19.977 hybrid contribution -1.117 0.553 -0.752 1.456 sum -8.649 2.721 17.623 19.819 Atomic orbital electron populations 1.22483 0.94966 1.02968 1.03439 1.20604 0.94302 0.97382 0.86889 0.88425 1.20942 0.95663 0.99783 0.96640 1.21818 1.00166 0.94695 0.89587 1.22093 0.94834 1.00105 1.02852 1.18614 0.91652 0.94576 0.83399 1.91578 1.88355 1.79108 1.51363 1.67002 1.37426 1.21632 1.00305 1.22456 0.94194 0.90661 0.93874 1.61945 1.58105 1.03635 1.02611 1.22120 0.96740 0.90855 1.00645 1.19935 0.94301 0.93436 0.87614 1.21311 1.30186 1.10760 0.93112 0.94562 1.25864 0.96647 1.01129 0.95479 1.70065 1.45273 1.42483 1.01465 0.85719 0.79964 0.79455 0.77818 1.19153 1.21312 1.16730 0.88619 0.92981 0.91874 0.79939 0.80149 0.82345 0.95150 0.93752 0.91862 0.98419 0.95051 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.89 7.71 71.98 0.56 -3.34 16 2 C 0.12 3.18 2.73 44.17 0.12 3.30 16 3 H 0.10 2.60 7.89 -2.39 -0.02 2.58 16 4 C -0.13 -3.16 4.65 -19.77 -0.09 -3.26 16 5 C -0.04 -0.65 9.24 22.46 0.21 -0.44 16 6 C -0.18 -3.23 10.09 22.41 0.23 -3.00 16 7 C 0.27 7.12 8.41 84.74 0.71 7.83 16 8 F -0.12 -3.30 17.29 44.97 0.78 -2.53 16 9 N -0.55 -17.41 10.37 -196.93 -2.04 -19.45 16 10 C 0.14 4.39 9.71 84.64 0.82 5.21 16 11 N -0.54 -20.01 3.70 -906.05 -3.35 -23.36 16 12 C 0.04 1.59 8.20 127.69 1.05 2.64 16 13 C 0.17 7.67 3.40 85.56 0.29 7.96 16 14 C -0.52 -28.77 9.10 25.60 0.23 -28.54 16 15 H 0.04 2.29 7.34 -2.91 -0.02 2.27 16 16 C 0.01 0.32 5.47 84.65 0.46 0.78 16 17 N -0.95 -59.02 13.96 21.45 0.30 -58.72 16 18 Si 0.95 42.39 27.47 68.60 1.88 44.28 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 21 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 22 H 0.10 1.33 6.57 -2.39 -0.02 1.31 16 23 H 0.05 1.29 6.99 -2.39 -0.02 1.28 16 24 H 0.06 1.37 6.46 -2.39 -0.02 1.36 16 25 H 0.18 1.80 6.27 -2.91 -0.02 1.79 16 26 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 27 H 0.16 5.46 7.43 -2.91 -0.02 5.44 16 28 H 0.03 1.01 6.58 -2.39 -0.02 0.99 16 29 H 0.04 1.87 6.92 -2.39 -0.02 1.86 16 30 H 0.06 2.00 6.70 -2.38 -0.02 1.98 16 31 H 0.00 -0.08 6.16 -2.39 -0.01 -0.09 16 32 H 0.03 1.35 7.34 -2.39 -0.02 1.33 16 33 H 0.27 15.37 8.31 -92.72 -0.77 14.60 16 Total: -1.00 -67.39 271.27 3.22 -64.18 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.06 Total: 6.45 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.59 Total: -10.84 kcal Atomic # 7 Polarization: -96.44 SS G_CDS: -5.09 Total: -101.53 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.78 Total: -2.53 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.28 kcal Total: -67.39 3.22 -64.18 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929809505.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.583 kcal (2) G-P(sol) polarization free energy of solvation -67.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds