Wall clock time and date at job start Sun Mar 29 2020 22:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47397 * 312.13782 * 3 2 1 5 5 N 1.46892 * 109.47264 * 179.37092 * 4 3 2 6 6 C 1.46906 * 111.00147 * 297.29607 * 5 4 3 7 7 C 1.50700 * 109.47083 * 292.74547 * 6 5 4 8 8 H 1.07994 * 119.99739 * 355.02787 * 7 6 5 9 9 C 1.37882 * 119.99696 * 175.02988 * 7 6 5 10 10 N 1.31509 * 120.00111 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99581 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46898 * 89.99873 * 11 9 7 13 13 H 1.48499 * 109.46882 * 209.99771 * 11 9 7 14 14 H 1.48497 * 109.47163 * 329.99890 * 11 9 7 15 15 C 1.46903 * 111.00124 * 61.24857 * 5 4 3 16 16 C 1.53001 * 109.46742 * 66.04693 * 15 5 4 17 17 O 1.42900 * 109.47315 * 65.00233 * 16 15 5 18 18 C 1.42901 * 114.00209 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.49783 * 218.62194 * 18 17 16 20 20 C 1.52995 * 117.49787 * 150.00050 * 18 17 16 21 21 H 1.08996 * 109.47070 * 192.13683 * 3 2 1 22 22 H 1.09003 * 109.46706 * 72.13718 * 3 2 1 23 23 H 1.09002 * 109.46895 * 59.37082 * 4 3 2 24 24 H 1.09000 * 109.47060 * 299.37244 * 4 3 2 25 25 H 1.09004 * 109.46516 * 52.74329 * 6 5 4 26 26 H 1.09002 * 109.47457 * 172.74021 * 6 5 4 27 27 H 0.96996 * 119.99817 * 179.97438 * 10 9 7 28 28 H 1.09002 * 109.47498 * 186.04577 * 15 5 4 29 29 H 1.08997 * 109.47250 * 306.04947 * 15 5 4 30 30 H 1.09003 * 109.47078 * 185.00043 * 16 15 5 31 31 H 1.09003 * 109.47176 * 304.99906 * 16 15 5 32 32 H 1.09002 * 115.54973 * 4.32768 * 18 17 16 33 33 H 1.08998 * 117.50125 * 359.97438 * 19 18 17 34 34 H 1.08998 * 117.49754 * 145.02076 * 19 18 17 35 35 H 1.09000 * 117.49622 * 214.98232 * 20 18 17 36 36 H 1.08998 * 117.50086 * 359.97308 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9669 1.0696 5 7 4.5873 -0.9775 1.0594 6 6 5.1014 -1.4677 -0.2265 7 6 4.7569 -2.9266 -0.3819 8 1 4.2823 -3.4587 0.4292 9 6 5.0478 -3.5819 -1.5596 10 7 5.6254 -2.9338 -2.5475 11 14 4.6215 -5.3904 -1.7520 12 1 3.2507 -5.5194 -2.3084 13 1 5.5924 -6.0325 -2.6740 14 1 4.6823 -6.0570 -0.4264 15 6 5.1256 0.3540 1.3683 16 6 4.7743 0.7239 2.8108 17 8 5.4382 -0.1695 3.7069 18 6 5.1763 0.0909 5.0874 19 6 6.3386 -0.0693 6.0694 20 6 5.2071 -1.0989 6.0488 21 1 2.9708 1.0055 0.2161 22 1 2.9714 -0.3144 -0.9782 23 1 2.7464 -1.9697 0.8598 24 1 2.7642 -0.6455 2.0491 25 1 4.6491 -0.8990 -1.0390 26 1 6.1840 -1.3449 -0.2557 27 1 5.8303 -3.3949 -3.3758 28 1 6.2091 0.3446 1.2493 29 1 4.6918 1.0878 0.6891 30 1 5.0955 1.7459 3.0123 31 1 3.6963 0.6471 2.9534 32 1 4.4531 0.8814 5.2878 33 1 7.3030 -0.3737 5.6625 34 1 6.3803 0.6159 6.9160 35 1 4.5042 -1.0909 6.8819 36 1 5.4266 -2.0802 5.6284 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930108104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:22 Heat of formation + Delta-G solvation = 16.022578 kcal Electronic energy + Delta-G solvation = -16806.021426 eV Core-core repulsion = 14098.806438 eV Total energy + Delta-G solvation = -2707.214988 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.64234 -37.59780 -35.99351 -34.64364 -32.65065 -30.61259 -29.06468 -26.07888 -24.18932 -22.34245 -22.11440 -21.79755 -19.63689 -17.46105 -16.96405 -16.25871 -15.82705 -15.13636 -14.62269 -14.51426 -14.37166 -13.63859 -13.47058 -13.36368 -12.83639 -12.21491 -12.06713 -12.04537 -11.64382 -11.52893 -11.43559 -11.18227 -11.12754 -10.75482 -10.65580 -10.52631 -10.39021 -10.18356 -9.79849 -9.24366 -8.89062 -8.45935 -7.30632 -6.05554 -4.06358 3.07734 3.10390 3.31967 3.38882 3.43358 3.69426 3.91095 4.31525 4.42873 4.84127 4.86525 5.02935 5.14388 5.30560 5.38964 5.40953 5.48713 5.52145 5.61195 5.65261 5.71259 5.79366 5.96931 6.03052 6.20135 6.25136 6.32408 6.62377 7.19304 7.24021 7.51053 7.77806 7.86215 8.03515 8.09884 8.47893 9.01945 9.58573 11.04834 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.006933 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.902558 B = 4037.529822 C = 5025.844253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.225 3.775 3 C -0.076 4.076 4 C 0.070 3.930 5 N -0.518 5.518 6 C 0.186 3.814 7 C -0.507 4.507 8 H 0.064 0.936 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.894 3.106 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.046 3.954 16 C 0.068 3.932 17 O -0.331 6.331 18 C 0.018 3.982 19 C -0.194 4.194 20 C -0.185 4.185 21 H 0.098 0.902 22 H 0.122 0.878 23 H 0.092 0.908 24 H 0.063 0.937 25 H 0.004 0.996 26 H 0.030 0.970 27 H 0.261 0.739 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.049 0.951 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.077 8.498 11.587 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.093 4.093 3 C -0.118 4.118 4 C -0.060 4.060 5 N -0.240 5.240 6 C 0.061 3.939 7 C -0.545 4.545 8 H 0.082 0.918 9 C -0.144 4.144 10 N -0.538 5.538 11 Si 0.722 3.278 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.197 1.197 15 C -0.082 4.082 16 C -0.009 4.009 17 O -0.249 6.249 18 C -0.041 4.041 19 C -0.231 4.231 20 C -0.222 4.222 21 H 0.116 0.884 22 H 0.140 0.860 23 H 0.110 0.890 24 H 0.081 0.919 25 H 0.021 0.979 26 H 0.048 0.952 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.113 0.887 36 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.390 7.986 11.696 14.230 hybrid contribution -0.101 -0.236 -0.833 0.872 sum -1.492 7.750 10.863 13.427 Atomic orbital electron populations 1.81137 1.13212 1.09775 1.09906 1.29294 0.95286 0.92344 0.92333 1.20285 0.81515 1.03629 1.06371 1.22107 0.89526 0.99388 0.94985 1.62345 1.04467 1.20745 1.36468 1.19871 0.95638 0.95550 0.82824 1.21145 1.39297 0.94709 0.99370 0.91750 1.24952 0.95326 0.98300 0.95847 1.69935 1.42453 1.36494 1.04931 0.86555 0.78032 0.85160 0.78068 1.20790 1.21303 1.19733 1.22191 1.01561 0.91953 0.92504 1.22690 0.96183 0.91685 0.90366 1.88046 1.69649 1.54819 1.12405 1.22600 0.99945 0.99629 0.81920 1.23358 0.95384 1.03001 1.01399 1.23295 1.01539 0.96173 1.01237 0.88358 0.85979 0.88971 0.91865 0.97881 0.95174 0.92918 0.90101 0.93554 0.93689 0.93269 0.87933 0.88237 0.88807 0.88696 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.36 18.54 42.15 0.78 -7.57 16 2 C 0.22 3.60 15.43 -20.76 -0.32 3.28 16 3 C -0.08 -1.11 5.05 -29.52 -0.15 -1.26 16 4 C 0.07 1.17 4.91 -3.83 -0.02 1.15 16 5 N -0.52 -9.80 4.64 -236.07 -1.10 -10.90 16 6 C 0.19 4.32 4.54 -4.97 -0.02 4.30 16 7 C -0.51 -13.32 8.39 -34.44 -0.29 -13.61 16 8 H 0.06 1.71 7.39 -52.49 -0.39 1.32 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -25.41 13.29 55.43 0.74 -24.68 16 11 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.05 0.71 5.12 -3.82 -0.02 0.69 16 16 C 0.07 0.90 5.86 37.16 0.22 1.11 16 17 O -0.33 -5.17 10.54 -35.23 -0.37 -5.54 16 18 C 0.02 0.22 6.44 -26.73 -0.17 0.05 16 19 C -0.19 -2.10 10.48 -26.73 -0.28 -2.38 16 20 C -0.19 -2.12 10.48 -26.74 -0.28 -2.40 16 21 H 0.10 1.16 6.33 -51.93 -0.33 0.84 16 22 H 0.12 2.02 6.28 -51.93 -0.33 1.69 16 23 H 0.09 1.75 6.98 -51.93 -0.36 1.39 16 24 H 0.06 0.94 6.32 -51.93 -0.33 0.61 16 25 H 0.00 0.08 6.02 -51.93 -0.31 -0.23 16 26 H 0.03 0.77 7.91 -51.93 -0.41 0.36 16 27 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.08 1.31 7.92 -51.93 -0.41 0.90 16 29 H 0.05 0.61 6.05 -51.93 -0.31 0.30 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.61 6.31 -51.93 -0.33 0.28 16 32 H 0.10 1.03 7.93 -51.93 -0.41 0.62 16 33 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 304.49 15.07 4.59 4.59 Total: -1.00 -29.85 304.49 -6.98 -36.84 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -5.17 Total: -1.26 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.43 Total: -7.63 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.42 Total: -43.15 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.37 Total: -5.54 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.85 -6.98 -36.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930108104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.859 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds