Wall clock time and date at job start Sun Mar 29 2020 22:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47397 * 312.13782 * 3 2 1 5 5 N 1.46892 * 109.47264 * 179.37092 * 4 3 2 6 6 C 1.46906 * 111.00147 * 297.29607 * 5 4 3 7 7 C 1.50700 * 109.47083 * 292.74547 * 6 5 4 8 8 H 1.07994 * 119.99739 * 355.02787 * 7 6 5 9 9 C 1.37882 * 119.99696 * 175.02988 * 7 6 5 10 10 N 1.31509 * 120.00111 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99581 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.46898 * 89.99873 * 11 9 7 13 13 H 1.48499 * 109.46882 * 209.99771 * 11 9 7 14 14 H 1.48497 * 109.47163 * 329.99890 * 11 9 7 15 15 C 1.46903 * 111.00124 * 61.24857 * 5 4 3 16 16 C 1.53001 * 109.46742 * 66.04693 * 15 5 4 17 17 O 1.42900 * 109.47315 * 65.00233 * 16 15 5 18 18 C 1.42901 * 114.00209 * 179.97438 * 17 16 15 19 19 C 1.52998 * 117.49783 * 218.62194 * 18 17 16 20 20 C 1.52995 * 117.49787 * 150.00050 * 18 17 16 21 21 H 1.08996 * 109.47070 * 192.13683 * 3 2 1 22 22 H 1.09003 * 109.46706 * 72.13718 * 3 2 1 23 23 H 1.09002 * 109.46895 * 59.37082 * 4 3 2 24 24 H 1.09000 * 109.47060 * 299.37244 * 4 3 2 25 25 H 1.09004 * 109.46516 * 52.74329 * 6 5 4 26 26 H 1.09002 * 109.47457 * 172.74021 * 6 5 4 27 27 H 0.96996 * 119.99817 * 179.97438 * 10 9 7 28 28 H 1.09002 * 109.47498 * 186.04577 * 15 5 4 29 29 H 1.08997 * 109.47250 * 306.04947 * 15 5 4 30 30 H 1.09003 * 109.47078 * 185.00043 * 16 15 5 31 31 H 1.09003 * 109.47176 * 304.99906 * 16 15 5 32 32 H 1.09002 * 115.54973 * 4.32768 * 18 17 16 33 33 H 1.08998 * 117.50125 * 359.97438 * 19 18 17 34 34 H 1.08998 * 117.49754 * 145.02076 * 19 18 17 35 35 H 1.09000 * 117.49622 * 214.98232 * 20 18 17 36 36 H 1.08998 * 117.50086 * 359.97308 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -0.9669 1.0696 5 7 4.5873 -0.9775 1.0594 6 6 5.1014 -1.4677 -0.2265 7 6 4.7569 -2.9266 -0.3819 8 1 4.2823 -3.4587 0.4292 9 6 5.0478 -3.5819 -1.5596 10 7 5.6254 -2.9338 -2.5475 11 14 4.6215 -5.3904 -1.7520 12 1 3.2507 -5.5194 -2.3084 13 1 5.5924 -6.0325 -2.6740 14 1 4.6823 -6.0570 -0.4264 15 6 5.1256 0.3540 1.3683 16 6 4.7743 0.7239 2.8108 17 8 5.4382 -0.1695 3.7069 18 6 5.1763 0.0909 5.0874 19 6 6.3386 -0.0693 6.0694 20 6 5.2071 -1.0989 6.0488 21 1 2.9708 1.0055 0.2161 22 1 2.9714 -0.3144 -0.9782 23 1 2.7464 -1.9697 0.8598 24 1 2.7642 -0.6455 2.0491 25 1 4.6491 -0.8990 -1.0390 26 1 6.1840 -1.3449 -0.2557 27 1 5.8303 -3.3949 -3.3758 28 1 6.2091 0.3446 1.2493 29 1 4.6918 1.0878 0.6891 30 1 5.0955 1.7459 3.0123 31 1 3.6963 0.6471 2.9534 32 1 4.4531 0.8814 5.2878 33 1 7.3030 -0.3737 5.6625 34 1 6.3803 0.6159 6.9160 35 1 4.5042 -1.0909 6.8819 36 1 5.4266 -2.0802 5.6284 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930108104.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:53:22 Heat of formation + Delta-G solvation = -3.354164 kcal Electronic energy + Delta-G solvation = -16806.861665 eV Core-core repulsion = 14098.806438 eV Total energy + Delta-G solvation = -2708.055227 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82522 -38.79542 -37.34615 -35.70905 -34.61927 -31.91498 -30.59038 -27.75829 -25.66010 -23.68219 -23.18865 -22.70685 -21.04433 -18.82559 -18.24804 -17.90355 -17.18817 -16.47646 -16.04916 -15.70604 -15.69437 -14.94018 -14.85637 -14.57383 -14.35461 -13.72034 -13.49810 -13.34628 -12.99829 -12.92795 -12.78447 -12.65934 -12.41022 -12.33158 -12.16357 -11.85470 -11.79722 -11.37299 -11.21710 -11.10579 -10.52734 -9.85220 -8.80917 -8.12856 -6.19387 1.42801 1.44755 1.54619 1.77120 1.80709 2.44770 2.74741 3.02499 3.04640 3.20783 3.48438 4.01401 4.11108 4.15685 4.22291 4.24498 4.41282 4.45404 4.58585 4.62858 4.74194 4.83477 4.84046 4.96964 5.09105 5.13287 5.22015 5.33540 5.41266 5.46866 5.75201 6.17352 6.40460 6.55006 6.60256 6.78383 6.97537 7.49477 8.96499 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.016333 B = 0.006933 C = 0.005570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.902558 B = 4037.529822 C = 5025.844253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.246 3.754 3 C -0.062 4.062 4 C 0.074 3.926 5 N -0.532 5.532 6 C 0.200 3.800 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.009 3.991 10 N -0.929 5.929 11 Si 0.951 3.049 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.044 3.956 16 C 0.071 3.929 17 O -0.370 6.370 18 C 0.004 3.996 19 C -0.186 4.186 20 C -0.192 4.192 21 H 0.137 0.863 22 H 0.105 0.895 23 H 0.063 0.937 24 H 0.088 0.912 25 H -0.001 1.001 26 H 0.000 1.000 27 H 0.262 0.738 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.756 9.651 12.921 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.174 5.174 2 C -0.071 4.071 3 C -0.104 4.104 4 C -0.056 4.056 5 N -0.255 5.255 6 C 0.074 3.926 7 C -0.554 4.554 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.570 5.570 11 Si 0.777 3.223 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.195 1.195 15 C -0.084 4.084 16 C -0.006 4.006 17 O -0.289 6.289 18 C -0.054 4.054 19 C -0.223 4.223 20 C -0.229 4.229 21 H 0.154 0.846 22 H 0.123 0.877 23 H 0.081 0.919 24 H 0.106 0.894 25 H 0.016 0.984 26 H 0.019 0.981 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.103 0.897 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.076 9.146 13.049 16.070 hybrid contribution 0.147 -0.575 -1.185 1.325 sum -1.930 8.571 11.864 14.763 Atomic orbital electron populations 1.81164 1.14246 1.11074 1.10944 1.29373 0.95223 0.91198 0.91300 1.20198 0.80489 1.05047 1.04660 1.22016 0.88124 0.98546 0.96885 1.62173 1.05859 1.23641 1.33819 1.19505 0.93822 0.94275 0.84975 1.21465 1.38504 0.96426 0.98961 0.92572 1.25663 0.95460 1.01977 0.95799 1.70029 1.43678 1.37923 1.05359 0.85659 0.77869 0.80844 0.77926 1.20270 1.21041 1.19527 1.22304 1.00650 0.90539 0.94911 1.22736 0.96765 0.92708 0.88366 1.87993 1.70493 1.56128 1.14283 1.22927 1.01323 1.00573 0.80547 1.23409 0.94284 1.02945 1.01694 1.23343 1.02670 0.95059 1.01874 0.84571 0.87732 0.91867 0.89364 0.98362 0.98142 0.92915 0.91775 0.90845 0.90636 0.92024 0.85273 0.89732 0.86069 0.86395 0.90265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -17.25 18.54 20.01 0.37 -16.88 16 2 C 0.25 7.44 15.43 89.44 1.38 8.82 16 3 C -0.06 -1.70 5.05 28.79 0.15 -1.55 16 4 C 0.07 2.38 4.91 86.30 0.42 2.81 16 5 N -0.53 -19.87 4.64 -900.78 -4.18 -24.05 16 6 C 0.20 9.45 4.54 85.56 0.39 9.84 16 7 C -0.51 -27.52 8.39 25.60 0.21 -27.31 16 8 H 0.06 3.03 7.39 -2.91 -0.02 3.01 16 9 C 0.01 0.51 5.46 84.66 0.46 0.97 16 10 N -0.93 -53.26 13.29 21.45 0.28 -52.98 16 11 Si 0.95 43.76 29.54 68.60 2.03 45.78 16 12 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 13 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 C 0.04 1.26 5.12 86.30 0.44 1.70 16 16 C 0.07 1.66 5.86 71.98 0.42 2.09 16 17 O -0.37 -11.00 10.54 -148.98 -1.57 -12.57 16 18 C 0.00 0.09 6.44 30.59 0.20 0.29 16 19 C -0.19 -3.66 10.48 30.59 0.32 -3.34 16 20 C -0.19 -4.12 10.48 30.59 0.32 -3.80 16 21 H 0.14 2.71 6.33 -2.39 -0.02 2.69 16 22 H 0.10 3.36 6.28 -2.39 -0.01 3.34 16 23 H 0.06 2.39 6.98 -2.39 -0.02 2.37 16 24 H 0.09 2.40 6.32 -2.39 -0.02 2.38 16 25 H 0.00 -0.06 6.02 -2.38 -0.01 -0.07 16 26 H 0.00 0.02 7.91 -2.39 -0.02 0.01 16 27 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 28 H 0.06 2.06 7.92 -2.39 -0.02 2.04 16 29 H 0.07 1.70 6.05 -2.39 -0.01 1.69 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.29 6.31 -2.39 -0.02 1.28 16 32 H 0.13 2.11 7.93 -2.39 -0.02 2.10 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -65.16 304.49 2.72 -62.45 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.07 Total: 7.74 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: 4.72 Total: -9.49 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -3.52 Total: -93.91 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -1.57 Total: -12.57 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -65.16 2.72 -62.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930108104.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.091 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds