Wall clock time and date at job start Sun Mar 29 2020 23:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99782 * 2 1 4 4 H 1.48495 * 109.46954 * 270.00298 * 3 2 1 5 5 H 1.48495 * 109.47074 * 30.00270 * 3 2 1 6 6 H 1.48503 * 109.46840 * 150.00186 * 3 2 1 7 7 C 1.37873 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00031 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00069 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.48531 * 110.99634 * 290.12363 * 10 9 7 12 12 C 1.54321 * 104.67467 * 200.80833 * 11 10 9 13 13 H 1.08999 * 111.82405 * 261.50729 * 12 11 10 14 14 C 1.54160 * 108.86420 * 137.48669 * 12 11 10 15 15 C 1.54843 * 104.32630 * 223.67653 * 14 12 11 16 16 C 1.54846 * 102.73477 * 38.18228 * 15 14 12 17 17 C 1.54166 * 104.43723 * 321.75672 * 16 15 14 18 18 C 1.50701 * 111.79365 * 261.35470 * 17 16 15 19 19 N 1.34772 * 119.99858 * 298.98146 * 18 17 16 20 20 O 1.21282 * 119.99925 * 118.98716 * 18 17 16 21 21 C 1.48525 * 111.00327 * 174.71949 * 10 9 7 22 22 H 0.97004 * 120.00354 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47043 * 60.00294 * 9 7 2 24 24 H 1.09007 * 109.47106 * 299.99865 * 9 7 2 25 25 H 1.09002 * 110.39757 * 82.01392 * 11 10 9 26 26 H 1.08996 * 110.40078 * 319.60962 * 11 10 9 27 27 H 1.09010 * 110.46318 * 104.96713 * 14 12 11 28 28 H 1.08996 * 110.46380 * 342.38960 * 14 12 11 29 29 H 1.09004 * 110.75871 * 279.87368 * 15 14 12 30 30 H 1.08999 * 110.76260 * 156.49537 * 15 14 12 31 31 H 1.09002 * 110.46114 * 80.53201 * 16 15 14 32 32 H 1.08997 * 110.46101 * 202.98494 * 16 15 14 33 33 H 0.96999 * 120.00550 * 0.02562 * 19 18 17 34 34 H 0.97001 * 119.99646 * 180.02562 * 19 18 17 35 35 H 1.08996 * 110.39704 * 277.99047 * 21 10 9 36 36 H 1.09009 * 110.39581 * 40.27570 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5789 0.0001 11 6 3.7294 -3.2394 1.3024 12 6 4.7237 -4.4183 1.3579 13 1 4.2549 -5.3579 1.0655 14 6 5.3262 -4.4959 2.7748 15 6 6.8366 -4.7395 2.5361 16 6 7.1332 -3.8573 1.2986 17 6 5.8826 -4.0088 0.4098 18 6 6.0957 -5.0186 -0.6884 19 7 7.0630 -4.8221 -1.6060 20 8 5.3967 -6.0079 -0.7464 21 6 5.4804 -2.6206 -0.1281 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8745 -0.6807 -0.8906 25 1 2.7034 -3.6060 1.3355 26 1 3.9134 -2.5482 2.1247 27 1 4.8893 -5.3262 3.3297 28 1 5.1710 -3.5573 3.3068 29 1 7.0285 -5.7898 2.3167 30 1 7.4215 -4.4099 3.3947 31 1 7.2660 -2.8169 1.5953 32 1 8.0183 -4.2195 0.7758 33 1 7.6223 -4.0309 -1.5595 34 1 7.1999 -5.4719 -2.3131 35 1 5.7741 -2.5206 -1.1730 36 1 5.9360 -1.8320 0.4709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933761370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:45 Heat of formation + Delta-G solvation = -40.517246 kcal Electronic energy + Delta-G solvation = -17753.085300 eV Core-core repulsion = 15043.418560 eV Total energy + Delta-G solvation = -2709.666739 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.63298 -37.93647 -35.24738 -33.68280 -32.50199 -30.32238 -29.72653 -26.68521 -25.36311 -22.90398 -21.96919 -20.64922 -19.84487 -18.72106 -17.48684 -16.76276 -16.28758 -15.44570 -15.09722 -14.36572 -14.20751 -14.07600 -13.87732 -13.29136 -12.95097 -12.38026 -12.28462 -11.87803 -11.50289 -11.19994 -11.13370 -11.03193 -10.70842 -10.60786 -10.47240 -10.22074 -10.08805 -9.89103 -9.60620 -9.58843 -9.27639 -8.57322 -7.54147 -6.04828 -4.02511 2.80737 3.26806 3.34229 3.34813 3.60343 4.38880 4.40807 4.52282 4.76434 5.02527 5.14686 5.26963 5.29728 5.38965 5.43802 5.61826 5.67467 5.73549 5.89333 5.93715 6.05050 6.06774 6.11157 6.25247 6.35530 6.58505 6.66685 6.77844 6.85301 6.95028 7.39914 7.49395 7.84561 7.87523 8.40419 8.64189 9.05229 9.56234 11.08432 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031866 B = 0.006904 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.471093 B = 4054.846788 C = 4200.680480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.152 3.848 10 N -0.497 5.497 11 C 0.053 3.947 12 C -0.082 4.082 13 H 0.101 0.899 14 C -0.120 4.120 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.087 4.087 18 C 0.547 3.453 19 N -0.858 5.858 20 O -0.537 6.537 21 C 0.043 3.957 22 H 0.264 0.736 23 H -0.008 1.008 24 H 0.024 0.976 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.399 0.601 34 H 0.398 0.602 35 H 0.072 0.928 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.635 -6.424 2.738 18.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.133 4.133 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.025 3.975 10 N -0.220 5.220 11 C -0.075 4.075 12 C -0.101 4.101 13 H 0.119 0.881 14 C -0.158 4.158 15 C -0.161 4.161 16 C -0.149 4.149 17 C -0.091 4.091 18 C 0.332 3.668 19 N -0.422 5.422 20 O -0.412 6.412 21 C -0.086 4.086 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.042 0.958 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.227 0.773 34 H 0.229 0.771 35 H 0.090 0.910 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.625 -7.122 2.411 18.246 hybrid contribution 1.094 1.681 0.214 2.017 sum 17.719 -5.441 2.625 18.720 Atomic orbital electron populations 1.69894 1.06109 1.26801 1.51029 1.24907 0.94739 0.98793 0.94887 0.86868 0.80251 0.84110 0.78559 1.20164 1.21156 1.19348 1.21000 0.88577 0.94846 1.50265 0.90124 1.20342 0.97501 0.84495 0.95147 1.65380 1.06787 1.19212 1.30634 1.23101 0.99673 0.93719 0.90998 1.22629 0.94109 1.00696 0.92690 0.88053 1.22520 0.94779 1.01949 0.96526 1.22506 0.96681 0.99626 0.97248 1.22522 0.95512 1.01049 0.95844 1.22069 0.97323 0.95199 0.94512 1.20071 0.78607 0.86118 0.81993 1.43816 1.37942 1.28268 1.32134 1.90695 1.45740 1.30129 1.74636 1.23172 0.92345 0.92625 1.00420 0.92655 0.99064 0.95816 0.89831 0.94049 0.91427 0.91178 0.91565 0.91448 0.90368 0.91597 0.77271 0.77122 0.90970 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.82 13.96 55.43 0.77 -27.05 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.87 21.46 27.47 -169.99 -4.67 16.79 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 7 C -0.51 -14.70 9.37 -34.44 -0.32 -15.02 16 8 H 0.08 2.56 7.85 -52.48 -0.41 2.15 16 9 C 0.15 3.70 3.64 -4.98 -0.02 3.69 16 10 N -0.50 -10.65 5.36 -231.60 -1.24 -11.89 16 11 C 0.05 1.04 5.50 -2.23 -0.01 1.03 16 12 C -0.08 -1.33 3.46 -88.14 -0.30 -1.63 16 13 H 0.10 1.83 6.84 -51.93 -0.36 1.47 16 14 C -0.12 -1.54 6.36 -25.15 -0.16 -1.70 16 15 C -0.12 -1.33 6.90 -24.79 -0.17 -1.50 16 16 C -0.11 -1.21 5.95 -25.15 -0.15 -1.36 16 17 C -0.09 -1.26 0.79 -153.23 -0.12 -1.38 16 18 C 0.55 8.22 6.82 -10.99 -0.07 8.14 16 19 N -0.86 -8.81 8.47 31.22 0.26 -8.55 16 20 O -0.54 -10.26 16.35 5.56 0.09 -10.17 16 21 C 0.04 0.71 5.63 -2.29 -0.01 0.70 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H -0.01 -0.20 6.94 -51.93 -0.36 -0.56 16 24 H 0.02 0.58 7.56 -51.93 -0.39 0.19 16 25 H 0.08 1.79 7.94 -51.93 -0.41 1.38 16 26 H 0.04 0.80 6.86 -51.93 -0.36 0.44 16 27 H 0.07 0.81 8.14 -51.92 -0.42 0.38 16 28 H 0.07 0.90 7.18 -51.93 -0.37 0.53 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.81 7.18 -51.93 -0.37 0.44 16 32 H 0.07 0.59 7.61 -51.93 -0.40 0.20 16 33 H 0.40 2.98 8.76 -40.82 -0.36 2.63 16 34 H 0.40 3.53 8.93 -40.82 -0.36 3.17 16 35 H 0.07 1.11 7.78 -51.93 -0.40 0.71 16 36 H 0.05 0.73 7.04 -51.92 -0.37 0.36 16 LS Contribution 283.46 15.07 4.27 4.27 Total: -1.00 -33.91 283.46 -7.31 -41.22 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.36 Total: 2.53 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -1.45 Total: -7.15 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.20 Total: -47.49 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.09 Total: -10.17 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -33.91 -7.31 -41.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933761370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.705 kcal (2) G-P(sol) polarization free energy of solvation -33.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds