Wall clock time and date at job start Sun Mar 29 2020 23:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99782 * 2 1 4 4 H 1.48495 * 109.46954 * 270.00298 * 3 2 1 5 5 H 1.48495 * 109.47074 * 30.00270 * 3 2 1 6 6 H 1.48503 * 109.46840 * 150.00186 * 3 2 1 7 7 C 1.37873 * 120.00210 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00031 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00069 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47148 * 180.02562 * 9 7 2 11 11 C 1.48531 * 110.99634 * 290.12363 * 10 9 7 12 12 C 1.54321 * 104.67467 * 200.80833 * 11 10 9 13 13 H 1.08999 * 111.82405 * 261.50729 * 12 11 10 14 14 C 1.54160 * 108.86420 * 137.48669 * 12 11 10 15 15 C 1.54843 * 104.32630 * 223.67653 * 14 12 11 16 16 C 1.54846 * 102.73477 * 38.18228 * 15 14 12 17 17 C 1.54166 * 104.43723 * 321.75672 * 16 15 14 18 18 C 1.50701 * 111.79365 * 261.35470 * 17 16 15 19 19 N 1.34772 * 119.99858 * 298.98146 * 18 17 16 20 20 O 1.21282 * 119.99925 * 118.98716 * 18 17 16 21 21 C 1.48525 * 111.00327 * 174.71949 * 10 9 7 22 22 H 0.97004 * 120.00354 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47043 * 60.00294 * 9 7 2 24 24 H 1.09007 * 109.47106 * 299.99865 * 9 7 2 25 25 H 1.09002 * 110.39757 * 82.01392 * 11 10 9 26 26 H 1.08996 * 110.40078 * 319.60962 * 11 10 9 27 27 H 1.09010 * 110.46318 * 104.96713 * 14 12 11 28 28 H 1.08996 * 110.46380 * 342.38960 * 14 12 11 29 29 H 1.09004 * 110.75871 * 279.87368 * 15 14 12 30 30 H 1.08999 * 110.76260 * 156.49537 * 15 14 12 31 31 H 1.09002 * 110.46114 * 80.53201 * 16 15 14 32 32 H 1.08997 * 110.46101 * 202.98494 * 16 15 14 33 33 H 0.96999 * 120.00550 * 0.02562 * 19 18 17 34 34 H 0.97001 * 119.99646 * 180.02562 * 19 18 17 35 35 H 1.08996 * 110.39704 * 277.99047 * 21 10 9 36 36 H 1.09009 * 110.39581 * 40.27570 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 4.0012 -2.5789 0.0001 11 6 3.7294 -3.2394 1.3024 12 6 4.7237 -4.4183 1.3579 13 1 4.2549 -5.3579 1.0655 14 6 5.3262 -4.4959 2.7748 15 6 6.8366 -4.7395 2.5361 16 6 7.1332 -3.8573 1.2986 17 6 5.8826 -4.0088 0.4098 18 6 6.0957 -5.0186 -0.6884 19 7 7.0630 -4.8221 -1.6060 20 8 5.3967 -6.0079 -0.7464 21 6 5.4804 -2.6206 -0.1281 22 1 -0.4851 0.8400 0.0004 23 1 3.8752 -0.6796 0.8895 24 1 3.8745 -0.6807 -0.8906 25 1 2.7034 -3.6060 1.3355 26 1 3.9134 -2.5482 2.1247 27 1 4.8893 -5.3262 3.3297 28 1 5.1710 -3.5573 3.3068 29 1 7.0285 -5.7898 2.3167 30 1 7.4215 -4.4099 3.3947 31 1 7.2660 -2.8169 1.5953 32 1 8.0183 -4.2195 0.7758 33 1 7.6223 -4.0309 -1.5595 34 1 7.1999 -5.4719 -2.3131 35 1 5.7741 -2.5206 -1.1730 36 1 5.9360 -1.8320 0.4709 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933761370.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:16:44 Heat of formation + Delta-G solvation = -68.644711 kcal Electronic energy + Delta-G solvation = -17754.304998 eV Core-core repulsion = 15043.418560 eV Total energy + Delta-G solvation = -2710.886438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.84754 -39.23163 -36.68162 -34.76891 -34.60198 -31.54017 -31.26568 -28.40125 -26.58122 -24.47215 -23.34281 -21.91272 -21.24833 -19.91885 -18.90261 -18.58190 -17.40080 -16.76706 -16.43981 -16.02752 -15.63116 -15.53194 -15.00895 -14.77576 -14.50541 -14.15227 -13.76520 -13.22924 -12.96759 -12.76690 -12.53752 -12.24528 -12.01723 -11.92386 -11.76731 -11.70792 -11.59010 -11.43066 -11.39262 -10.83112 -10.79162 -10.61564 -9.17924 -8.29754 -6.34983 1.34008 1.36829 1.47400 1.64946 2.33673 2.59742 3.02902 3.22163 3.28751 3.60223 3.82382 4.12773 4.17683 4.33048 4.34896 4.41576 4.54223 4.64914 4.73778 4.80550 4.84828 4.91082 4.93856 5.06032 5.09813 5.17737 5.24027 5.32416 5.49179 5.49584 5.93040 5.95081 6.12821 6.49221 6.58657 6.71315 7.28890 7.39322 8.87591 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.031866 B = 0.006904 C = 0.006664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.471093 B = 4054.846788 C = 4200.680480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.955 3.045 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.244 1.244 7 C -0.523 4.523 8 H 0.026 0.974 9 C 0.164 3.836 10 N -0.529 5.529 11 C 0.056 3.944 12 C -0.082 4.082 13 H 0.072 0.928 14 C -0.118 4.118 15 C -0.116 4.116 16 C -0.103 4.103 17 C -0.083 4.083 18 C 0.541 3.459 19 N -0.833 5.833 20 O -0.588 6.588 21 C 0.044 3.956 22 H 0.267 0.733 23 H -0.001 1.001 24 H 0.032 0.968 25 H 0.041 0.959 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.417 0.583 34 H 0.408 0.592 35 H 0.084 0.916 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.747 -4.943 3.078 22.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.167 1.167 7 C -0.561 4.561 8 H 0.044 0.956 9 C 0.037 3.963 10 N -0.253 5.253 11 C -0.072 4.072 12 C -0.102 4.102 13 H 0.091 0.909 14 C -0.155 4.155 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.087 4.087 18 C 0.326 3.674 19 N -0.397 5.397 20 O -0.468 6.468 21 C -0.084 4.084 22 H 0.076 0.924 23 H 0.017 0.983 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.249 0.751 34 H 0.240 0.760 35 H 0.103 0.897 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 20.803 -5.640 2.730 21.726 hybrid contribution -0.281 1.111 0.062 1.147 sum 20.522 -4.529 2.792 21.201 Atomic orbital electron populations 1.70076 1.08407 1.28254 1.52401 1.25971 0.95692 1.03543 0.94076 0.85603 0.79449 0.77820 0.79380 1.18898 1.20700 1.16706 1.21247 0.91413 0.93033 1.50406 0.95581 1.20078 0.94164 0.86567 0.95509 1.65219 1.10799 1.17505 1.31758 1.23017 0.98601 0.95058 0.90570 1.22532 0.94172 0.97631 0.95850 0.90922 1.22501 0.96587 1.02351 0.94087 1.22502 0.94788 0.99780 0.98314 1.22567 0.94271 1.02215 0.95067 1.22046 0.98391 0.93678 0.94538 1.20250 0.78872 0.85559 0.82693 1.43588 1.36385 1.28884 1.30822 1.90685 1.47917 1.32273 1.75930 1.23298 0.88840 0.94416 1.01873 0.92370 0.98302 0.95002 0.94014 0.93654 0.91082 0.90853 0.91675 0.88689 0.88804 0.88840 0.75147 0.76002 0.89724 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.94 13.96 21.45 0.30 -60.64 16 2 C 0.00 0.25 5.47 84.65 0.46 0.71 16 3 Si 0.96 43.81 27.47 68.60 1.88 45.70 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 7 C -0.52 -31.41 9.37 25.60 0.24 -31.17 16 8 H 0.03 1.79 7.85 -2.91 -0.02 1.76 16 9 C 0.16 7.94 3.64 85.56 0.31 8.25 16 10 N -0.53 -22.82 5.36 -886.66 -4.75 -27.57 16 11 C 0.06 2.26 5.50 86.44 0.48 2.73 16 12 C -0.08 -2.68 3.46 -9.19 -0.03 -2.71 16 13 H 0.07 2.78 6.84 -2.39 -0.02 2.77 16 14 C -0.12 -2.84 6.36 31.62 0.20 -2.64 16 15 C -0.12 -2.09 6.90 31.85 0.22 -1.87 16 16 C -0.10 -1.79 5.95 31.62 0.19 -1.61 16 17 C -0.08 -2.21 0.79 -51.35 -0.04 -2.25 16 18 C 0.54 15.41 6.82 87.66 0.60 16.00 16 19 N -0.83 -14.61 8.47 -173.54 -1.47 -16.08 16 20 O -0.59 -22.71 16.35 -3.04 -0.05 -22.76 16 21 C 0.04 1.33 5.63 86.40 0.49 1.82 16 22 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 23 H 0.00 -0.03 6.94 -2.39 -0.02 -0.05 16 24 H 0.03 1.49 7.56 -2.38 -0.02 1.47 16 25 H 0.04 1.97 7.94 -2.39 -0.02 1.95 16 26 H 0.05 1.77 6.86 -2.39 -0.02 1.75 16 27 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 28 H 0.07 1.74 7.18 -2.39 -0.02 1.72 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.41 7.18 -2.39 -0.02 1.40 16 32 H 0.09 1.15 7.61 -2.39 -0.02 1.13 16 33 H 0.42 4.44 8.76 -92.71 -0.81 3.63 16 34 H 0.41 6.15 8.93 -92.71 -0.83 5.32 16 35 H 0.08 2.33 7.78 -2.39 -0.02 2.31 16 36 H 0.07 1.84 7.04 -2.38 -0.02 1.82 16 Total: -1.00 -78.67 283.46 -1.58 -80.25 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -0.60 Total: 13.85 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 3.11 Total: -12.75 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -5.92 Total: -104.29 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.05 Total: -22.76 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -78.67 -1.58 -80.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933761370.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.604 kcal (2) G-P(sol) polarization free energy of solvation -78.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds