Wall clock time and date at job start Sun Mar 29 2020 22:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 120.00342 * 2 1 4 4 H 1.48501 * 109.46980 * 270.00399 * 3 2 1 5 5 H 1.48501 * 109.46805 * 30.00143 * 3 2 1 6 6 H 1.48496 * 109.47014 * 150.00238 * 3 2 1 7 7 C 1.38822 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99383 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99744 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99402 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.78199 * 323.21944 * 10 9 7 12 12 C 1.55157 * 110.71624 * 86.45404 * 10 9 7 13 13 C 1.54918 * 101.58155 * 153.86110 * 12 10 9 14 14 N 1.47425 * 104.82827 * 322.99497 * 13 12 10 15 15 C 1.34778 * 125.64271 * 204.07868 * 14 13 12 16 16 O 1.21282 * 119.99788 * 180.02562 * 15 14 13 17 17 C 1.50703 * 120.00112 * 0.05219 * 15 14 13 18 18 C 1.53779 * 113.61704 * 279.13579 * 17 15 14 19 19 C 1.53947 * 87.01955 * 220.04909 * 18 17 15 20 20 C 1.53778 * 87.11556 * 25.36466 * 19 18 17 21 21 C 1.47015 * 108.70882 * 24.12597 * 14 13 12 22 22 H 0.97001 * 119.99458 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00399 * 0.02562 * 9 7 2 24 24 H 1.09001 * 111.00846 * 271.93819 * 12 10 9 25 25 H 1.09000 * 111.00346 * 35.79350 * 12 10 9 26 26 H 1.08999 * 110.35942 * 81.82689 * 13 12 10 27 27 H 1.08996 * 110.36556 * 204.15522 * 13 12 10 28 28 H 1.08995 * 112.84856 * 50.33773 * 17 15 14 29 29 H 1.09007 * 113.61029 * 334.56952 * 18 17 15 30 30 H 1.08998 * 113.61427 * 105.46542 * 18 17 15 31 31 H 1.08996 * 113.53887 * 270.81207 * 19 18 17 32 32 H 1.09009 * 113.74410 * 139.94208 * 19 18 17 33 33 H 1.09003 * 113.61434 * 220.09306 * 20 19 18 34 34 H 1.09001 * 113.61738 * 89.18294 * 20 19 18 35 35 H 1.09000 * 109.88350 * 239.52260 * 21 14 13 36 36 H 1.08997 * 110.01690 * 118.42776 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5988 -3.2138 0.6094 12 6 4.3082 -2.9915 -1.4495 13 6 5.5885 -3.8509 -1.3005 14 7 6.4279 -3.1136 -0.3386 15 6 7.7688 -3.2031 -0.2365 16 8 8.3587 -2.5473 0.5960 17 6 8.5353 -4.1175 -1.1570 18 6 8.5183 -5.5907 -0.7164 19 6 9.9977 -5.6504 -1.1381 20 6 10.0495 -4.1339 -0.8885 21 6 5.5601 -2.2655 0.4914 22 1 -0.4849 0.8401 0.0004 23 1 3.8646 -0.3622 -0.0007 24 1 3.4617 -3.6025 -1.7631 25 1 4.4702 -2.1661 -2.1427 26 1 5.3397 -4.8372 -0.9088 27 1 6.0992 -3.9401 -2.2593 28 1 8.2796 -3.9728 -2.2066 29 1 8.3637 -5.7244 0.3544 30 1 7.8652 -6.2198 -1.3211 31 1 10.1418 -5.9262 -2.1827 32 1 10.6251 -6.2265 -0.4578 33 1 10.6307 -3.5886 -1.6322 34 1 10.3143 -3.8685 0.1350 35 1 5.8454 -1.2197 0.3778 36 1 5.6410 -2.5600 1.5377 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018391332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:30 Heat of formation + Delta-G solvation = -0.198711 kcal Electronic energy + Delta-G solvation = -17043.858123 eV Core-core repulsion = 14335.939726 eV Total energy + Delta-G solvation = -2707.918396 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.36682 -38.27925 -36.81892 -34.26398 -31.64946 -29.85744 -28.59797 -26.46762 -25.79500 -23.44779 -22.66503 -20.40795 -20.07353 -18.89596 -17.77777 -17.23643 -16.12978 -15.70055 -15.35218 -14.51748 -14.02608 -13.99166 -13.30322 -13.21354 -12.76138 -12.65053 -12.52876 -12.16153 -11.94860 -11.86427 -11.44229 -11.32285 -10.92275 -10.75435 -10.71817 -10.60309 -10.51328 -10.10896 -9.67249 -9.57096 -9.00878 -8.47696 -7.37139 -5.84170 -3.21590 2.70753 3.10681 3.34809 3.38761 3.43097 4.32238 4.40971 4.48816 4.53644 4.61476 4.83437 4.94109 5.16088 5.21613 5.37441 5.45458 5.46750 5.51765 5.57735 5.64130 5.65273 5.75770 5.84423 5.87751 5.90587 6.12764 6.21185 6.26406 6.47502 6.51085 6.77457 7.67487 7.90021 8.28477 8.34390 9.11166 9.83780 10.02056 11.33574 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051129 B = 0.005125 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.503162 B = 5461.740442 C = 5783.916216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.093 0.907 9 N -0.740 5.740 10 C 0.177 3.823 11 H 0.072 0.928 12 C -0.154 4.154 13 C 0.100 3.900 14 N -0.612 5.612 15 C 0.533 3.467 16 O -0.548 6.548 17 C -0.134 4.134 18 C -0.122 4.122 19 C -0.142 4.142 20 C -0.118 4.118 21 C 0.097 3.903 22 H 0.261 0.739 23 H 0.363 0.637 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.914 -11.573 -4.417 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.712 3.288 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.066 3.934 11 H 0.090 0.910 12 C -0.195 4.195 13 C -0.023 4.023 14 N -0.345 5.345 15 C 0.322 3.678 16 O -0.426 6.426 17 C -0.155 4.155 18 C -0.160 4.160 19 C -0.179 4.179 20 C -0.156 4.156 21 C -0.026 4.026 22 H 0.071 0.929 23 H 0.197 0.803 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.103 0.897 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.027 -11.264 -3.939 20.792 hybrid contribution 0.368 1.289 -0.138 1.347 sum 17.395 -9.976 -4.076 20.462 Atomic orbital electron populations 1.69693 1.05118 1.26007 1.56912 1.24661 0.95214 0.97238 1.01580 0.86584 0.79326 0.84958 0.77888 1.20976 1.21568 1.20229 1.19034 0.80196 0.94857 1.43826 0.88969 1.42719 1.04182 1.01493 1.89878 1.21152 0.88851 0.89916 0.93514 0.90979 1.23524 0.95330 0.99512 1.01130 1.22401 0.92083 0.95717 0.92114 1.48506 1.05517 1.44066 1.36440 1.20183 0.80572 0.82514 0.84567 1.90676 1.68141 1.45980 1.37769 1.22750 0.97045 0.95777 0.99934 1.22832 0.97423 0.93732 1.01994 1.22858 0.96493 0.96857 1.01700 1.22807 0.93409 0.96010 1.03385 1.22277 0.90675 0.94993 0.94652 0.92910 0.80326 0.90049 0.90723 0.91442 0.91239 0.87129 0.89738 0.90645 0.89961 0.91049 0.91126 0.88778 0.91573 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.66 13.97 55.49 0.78 -27.88 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.89 27.74 -169.99 -4.71 17.18 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.54 6.52 56.52 0.37 -6.17 16 7 C -0.25 -6.81 10.46 -15.05 -0.16 -6.97 16 8 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 9 N -0.74 -17.02 5.05 -51.65 -0.26 -17.28 16 10 C 0.18 3.24 3.59 -66.09 -0.24 3.00 16 11 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 12 C -0.15 -2.38 6.77 -24.58 -0.17 -2.54 16 13 C 0.10 1.23 6.69 -2.52 -0.02 1.21 16 14 N -0.61 -9.13 3.33 -170.52 -0.57 -9.69 16 15 C 0.53 8.06 7.37 -10.98 -0.08 7.98 16 16 O -0.55 -10.34 16.24 5.56 0.09 -10.25 16 17 C -0.13 -1.44 3.28 -90.96 -0.30 -1.74 16 18 C -0.12 -1.07 7.64 -25.83 -0.20 -1.27 16 19 C -0.14 -1.09 8.09 -25.83 -0.21 -1.30 16 20 C -0.12 -1.18 7.40 -25.92 -0.19 -1.37 16 21 C 0.10 1.67 6.62 -3.07 -0.02 1.65 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 23 H 0.36 8.37 5.37 -40.82 -0.22 8.15 16 24 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.70 7.28 -51.93 -0.38 0.33 16 28 H 0.11 1.02 7.54 -51.93 -0.39 0.63 16 29 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.10 7.45 -51.93 -0.39 0.72 16 35 H 0.07 1.23 7.69 -51.93 -0.40 0.83 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 293.51 15.07 4.42 4.42 Total: -1.00 -32.08 293.51 -7.52 -39.59 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.59 Total: 5.08 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.67 Total: -1.16 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.05 Total: -54.86 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.08 -7.52 -39.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018391332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.395 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds