Wall clock time and date at job start Sun Mar 29 2020 22:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86808 * 120.00342 * 2 1 4 4 H 1.48501 * 109.46980 * 270.00399 * 3 2 1 5 5 H 1.48501 * 109.46805 * 30.00143 * 3 2 1 6 6 H 1.48496 * 109.47014 * 150.00238 * 3 2 1 7 7 C 1.38822 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99383 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99744 * 179.97438 * 7 2 1 10 10 C 1.46501 * 119.99402 * 179.97438 * 9 7 2 11 11 H 1.08993 * 110.78199 * 323.21944 * 10 9 7 12 12 C 1.55157 * 110.71624 * 86.45404 * 10 9 7 13 13 C 1.54918 * 101.58155 * 153.86110 * 12 10 9 14 14 N 1.47425 * 104.82827 * 322.99497 * 13 12 10 15 15 C 1.34778 * 125.64271 * 204.07868 * 14 13 12 16 16 O 1.21282 * 119.99788 * 180.02562 * 15 14 13 17 17 C 1.50703 * 120.00112 * 0.05219 * 15 14 13 18 18 C 1.53779 * 113.61704 * 279.13579 * 17 15 14 19 19 C 1.53947 * 87.01955 * 220.04909 * 18 17 15 20 20 C 1.53778 * 87.11556 * 25.36466 * 19 18 17 21 21 C 1.47015 * 108.70882 * 24.12597 * 14 13 12 22 22 H 0.97001 * 119.99458 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00399 * 0.02562 * 9 7 2 24 24 H 1.09001 * 111.00846 * 271.93819 * 12 10 9 25 25 H 1.09000 * 111.00346 * 35.79350 * 12 10 9 26 26 H 1.08999 * 110.35942 * 81.82689 * 13 12 10 27 27 H 1.08996 * 110.36556 * 204.15522 * 13 12 10 28 28 H 1.08995 * 112.84856 * 50.33773 * 17 15 14 29 29 H 1.09007 * 113.61029 * 334.56952 * 18 17 15 30 30 H 1.08998 * 113.61427 * 105.46542 * 18 17 15 31 31 H 1.08996 * 113.53887 * 270.81207 * 19 18 17 32 32 H 1.09009 * 113.74410 * 139.94208 * 19 18 17 33 33 H 1.09003 * 113.61434 * 220.09306 * 20 19 18 34 34 H 1.09001 * 113.61738 * 89.18294 * 20 19 18 35 35 H 1.09000 * 109.88350 * 239.52260 * 21 14 13 36 36 H 1.08997 * 110.01690 * 118.42776 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 1 3.5988 -3.2138 0.6094 12 6 4.3082 -2.9915 -1.4495 13 6 5.5885 -3.8509 -1.3005 14 7 6.4279 -3.1136 -0.3386 15 6 7.7688 -3.2031 -0.2365 16 8 8.3587 -2.5473 0.5960 17 6 8.5353 -4.1175 -1.1570 18 6 8.5183 -5.5907 -0.7164 19 6 9.9977 -5.6504 -1.1381 20 6 10.0495 -4.1339 -0.8885 21 6 5.5601 -2.2655 0.4914 22 1 -0.4849 0.8401 0.0004 23 1 3.8646 -0.3622 -0.0007 24 1 3.4617 -3.6025 -1.7631 25 1 4.4702 -2.1661 -2.1427 26 1 5.3397 -4.8372 -0.9088 27 1 6.0992 -3.9401 -2.2593 28 1 8.2796 -3.9728 -2.2066 29 1 8.3637 -5.7244 0.3544 30 1 7.8652 -6.2198 -1.3211 31 1 10.1418 -5.9262 -2.1827 32 1 10.6251 -6.2265 -0.4578 33 1 10.6307 -3.5886 -1.6322 34 1 10.3143 -3.8685 0.1350 35 1 5.8454 -1.2197 0.3778 36 1 5.6410 -2.5600 1.5377 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018391332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:56:29 Heat of formation + Delta-G solvation = -21.648092 kcal Electronic energy + Delta-G solvation = -17044.788238 eV Core-core repulsion = 14335.939726 eV Total energy + Delta-G solvation = -2708.848511 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45159 -39.39127 -37.97787 -36.03537 -33.56150 -31.33979 -29.93120 -27.53435 -26.51190 -25.14239 -24.02834 -21.76069 -21.15222 -19.85684 -19.74274 -18.36258 -17.44873 -16.80476 -16.50687 -16.05576 -15.66601 -15.30728 -14.78250 -14.49758 -14.20275 -13.77963 -13.55084 -13.38897 -13.23830 -13.11364 -12.90859 -12.71521 -12.28364 -12.25364 -12.09549 -11.83355 -11.69931 -11.39993 -11.27195 -11.00310 -10.73682 -9.71564 -9.36045 -8.04674 -5.39125 1.37476 1.38221 1.45340 1.56932 1.94534 2.45719 3.25228 3.44392 3.51377 3.62288 3.69906 3.79607 3.93544 3.96202 4.17490 4.21384 4.36726 4.45128 4.63781 4.71074 4.81238 4.83210 4.88845 4.95778 5.05503 5.10934 5.16048 5.21012 5.25631 5.39639 5.55162 5.74883 6.19075 6.52924 7.02964 7.11516 7.78086 7.95833 9.16233 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.051129 B = 0.005125 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.503162 B = 5461.740442 C = 5783.916216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.979 5.979 2 C -0.056 4.056 3 Si 0.947 3.053 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.260 1.260 7 C -0.229 4.229 8 H 0.067 0.933 9 N -0.747 5.747 10 C 0.168 3.832 11 H 0.070 0.930 12 C -0.147 4.147 13 C 0.108 3.892 14 N -0.612 5.612 15 C 0.526 3.474 16 O -0.595 6.595 17 C -0.132 4.132 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.127 4.127 21 C 0.105 3.895 22 H 0.258 0.742 23 H 0.363 0.637 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.137 0.863 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.947 -13.049 -6.002 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.629 5.629 2 C -0.248 4.248 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.185 1.185 7 C -0.360 4.360 8 H 0.085 0.915 9 N -0.390 5.390 10 C 0.059 3.941 11 H 0.088 0.912 12 C -0.187 4.187 13 C -0.014 4.014 14 N -0.345 5.345 15 C 0.317 3.683 16 O -0.476 6.476 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.164 4.164 20 C -0.165 4.165 21 C -0.020 4.020 22 H 0.067 0.933 23 H 0.197 0.803 24 H 0.105 0.895 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.122 0.878 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.109 -12.797 -5.545 23.657 hybrid contribution -0.243 1.655 0.387 1.717 sum 18.866 -11.142 -5.158 22.509 Atomic orbital electron populations 1.69851 1.06912 1.26650 1.59531 1.25383 0.95966 1.00811 1.02662 0.85536 0.78471 0.80437 0.78076 1.20371 1.22214 1.18528 1.19013 0.82001 0.93737 1.41222 0.91473 1.42729 1.02801 1.03324 1.90134 1.21348 0.88972 0.87994 0.95785 0.91220 1.23357 0.97482 0.99767 0.98116 1.22536 0.90102 0.95438 0.93276 1.48616 1.05705 1.43795 1.36419 1.21103 0.80358 0.82309 0.84519 1.90654 1.68993 1.48011 1.39931 1.22945 0.96502 0.95799 1.00024 1.22851 0.98823 0.92352 1.01557 1.22838 0.95636 0.94719 1.03194 1.22835 0.93181 0.98311 1.02194 1.21989 0.90333 0.94681 0.94953 0.93268 0.80310 0.89501 0.91758 0.89001 0.87784 0.84556 0.91258 0.88200 0.87644 0.90493 0.90237 0.91406 0.93270 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.71 13.97 21.65 0.30 -61.41 16 2 C -0.06 -3.26 5.50 84.87 0.47 -2.79 16 3 Si 0.95 45.56 27.74 68.60 1.90 47.46 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 6 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16 7 C -0.23 -12.61 10.46 84.04 0.88 -11.73 16 8 H 0.07 3.98 8.06 -2.91 -0.02 3.95 16 9 N -0.75 -34.07 5.05 -317.32 -1.60 -35.68 16 10 C 0.17 6.02 3.59 46.18 0.17 6.19 16 11 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 12 C -0.15 -4.21 6.77 31.99 0.22 -3.99 16 13 C 0.11 2.25 6.69 86.86 0.58 2.83 16 14 N -0.61 -17.02 3.33 -811.79 -2.70 -19.72 16 15 C 0.53 15.08 7.37 87.66 0.65 15.72 16 16 O -0.59 -22.49 16.24 -3.04 -0.05 -22.54 16 17 C -0.13 -2.41 3.28 -11.01 -0.04 -2.45 16 18 C -0.12 -1.64 7.64 31.18 0.24 -1.41 16 19 C -0.13 -1.48 8.09 31.18 0.25 -1.23 16 20 C -0.13 -2.27 7.40 31.12 0.23 -2.04 16 21 C 0.10 3.52 6.62 86.73 0.57 4.09 16 22 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 23 H 0.36 16.47 5.37 -92.71 -0.50 15.97 16 24 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.10 1.55 7.28 -2.39 -0.02 1.53 16 28 H 0.14 1.83 7.54 -2.39 -0.02 1.81 16 29 H 0.07 1.19 8.09 -2.38 -0.02 1.17 16 30 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.84 8.14 -2.38 -0.02 0.83 16 33 H 0.08 1.24 8.14 -2.39 -0.02 1.23 16 34 H 0.07 1.57 7.45 -2.39 -0.02 1.55 16 35 H 0.05 1.82 7.69 -2.39 -0.02 1.80 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -71.38 293.51 2.57 -68.81 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.50 Total: 19.86 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.21 Total: 3.21 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -4.00 Total: -116.80 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -71.38 2.57 -68.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018391332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.165 kcal (2) G-P(sol) polarization free energy of solvation -71.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds