Wall clock time and date at job start Sun Mar 29 2020 22:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85392 * 334.66983 * 10 9 7 12 12 C 1.53784 * 113.61474 * 105.86333 * 10 9 7 13 13 C 1.54043 * 86.99013 * 89.16298 * 12 10 9 14 14 H 1.09000 * 113.69111 * 270.87880 * 13 12 10 15 15 N 1.46499 * 113.62500 * 139.97991 * 13 12 10 16 16 C 1.34770 * 119.99991 * 107.50378 * 15 13 12 17 17 O 1.21276 * 120.00342 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99609 * 180.02562 * 16 15 13 19 19 C 1.53005 * 109.46944 * 179.97438 * 18 16 15 20 20 C 1.52996 * 117.50365 * 243.62262 * 19 18 16 21 21 C 1.52994 * 60.00011 * 252.51083 * 20 19 18 22 22 C 1.53784 * 87.07706 * 25.43131 * 13 12 10 23 23 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 25 25 H 1.09000 * 113.61638 * 203.67079 * 12 10 9 26 26 H 1.09002 * 113.61479 * 334.56726 * 12 10 9 27 27 H 0.96999 * 119.99301 * 287.50681 * 15 13 12 28 28 H 1.08994 * 109.47372 * 300.00114 * 18 16 15 29 29 H 1.08998 * 109.46926 * 60.00612 * 18 16 15 30 30 H 1.08999 * 115.54785 * 29.33632 * 19 18 16 31 31 H 1.09002 * 117.49527 * 0.02562 * 20 19 18 32 32 H 1.08997 * 117.49951 * 145.01811 * 20 19 18 33 33 H 1.08998 * 117.49937 * 252.50512 * 21 20 19 34 34 H 1.09005 * 117.49905 * 107.48480 * 21 20 19 35 35 H 1.08995 * 113.61669 * 220.02958 * 22 13 12 36 36 H 1.08998 * 113.61239 * 89.12038 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 1 3.5373 -3.2916 0.4304 12 6 4.7541 -2.8116 -1.3542 13 6 5.9934 -2.0350 -0.8704 14 1 5.9641 -0.9716 -1.1081 15 7 7.2628 -2.6658 -1.2402 16 6 8.0316 -2.1194 -2.2029 17 8 7.6728 -1.1052 -2.7627 18 6 9.3372 -2.7687 -2.5836 19 6 10.0074 -1.9546 -3.6923 20 6 10.2016 -2.6344 -5.0491 21 6 11.4058 -2.3860 -4.1387 22 6 5.5392 -2.3584 0.5628 23 1 -0.4850 0.8401 -0.0004 24 1 3.8646 -0.3622 0.0007 25 1 4.9346 -3.8771 -1.4963 26 1 4.2516 -2.3494 -2.2039 27 1 7.5499 -3.4768 -0.7922 28 1 9.9920 -2.8058 -1.7131 29 1 9.1489 -3.7814 -2.9402 30 1 9.7865 -0.8873 -3.6908 31 1 9.8515 -3.6615 -5.1521 32 1 10.1083 -2.0144 -5.9407 33 1 12.1048 -1.6025 -4.4312 34 1 11.8483 -3.2498 -3.6425 35 1 5.6700 -1.5306 1.2596 36 1 5.9340 -3.3003 0.9438 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019926218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:13 Heat of formation + Delta-G solvation = 16.325991 kcal Electronic energy + Delta-G solvation = -16536.395364 eV Core-core repulsion = 13829.193533 eV Total energy + Delta-G solvation = -2707.201832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.99787 -38.39091 -37.03669 -34.12064 -32.67202 -30.50661 -29.39540 -25.22794 -24.47649 -22.65017 -22.56774 -21.24458 -20.13259 -18.94689 -17.67807 -17.11601 -16.30066 -15.57914 -15.14241 -14.81236 -14.24511 -14.23100 -13.60891 -13.14534 -12.82753 -12.67348 -12.17040 -12.09423 -12.02398 -11.74653 -11.64521 -10.95316 -10.84433 -10.59189 -10.39645 -10.26363 -10.22953 -9.91876 -9.65995 -9.55323 -8.94928 -8.76089 -7.31010 -5.79447 -3.16127 2.70951 3.23091 3.38974 3.43674 3.46797 3.62445 4.46472 4.58186 4.59222 4.69732 4.88445 4.94610 5.07169 5.20084 5.22289 5.34078 5.38837 5.41595 5.44556 5.66322 5.71347 5.76459 5.87602 5.99416 6.07664 6.12643 6.26474 6.51154 6.58202 6.69185 6.90337 7.61645 7.97198 8.33416 8.39904 9.17245 9.89753 10.08113 11.38434 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039160 B = 0.004641 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.837012 B = 6031.323544 C = 6383.685845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.176 3.824 11 H 0.076 0.924 12 C -0.182 4.182 13 C 0.121 3.879 14 H 0.109 0.891 15 N -0.720 5.720 16 C 0.510 3.490 17 O -0.538 6.538 18 C -0.111 4.111 19 C -0.140 4.140 20 C -0.178 4.178 21 C -0.182 4.182 22 C -0.164 4.164 23 H 0.260 0.740 24 H 0.363 0.637 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.397 0.603 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.071 0.929 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.822 -8.566 -3.679 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.094 0.906 12 C -0.224 4.224 13 C 0.017 3.983 14 H 0.127 0.873 15 N -0.370 5.370 16 C 0.296 3.704 17 O -0.415 6.415 18 C -0.151 4.151 19 C -0.158 4.158 20 C -0.215 4.215 21 C -0.219 4.219 22 C -0.204 4.204 23 H 0.070 0.930 24 H 0.196 0.804 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.231 0.769 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.136 0.864 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 21.269 -7.858 -4.070 23.037 hybrid contribution 0.726 0.779 0.114 1.071 sum 21.995 -7.079 -3.956 23.442 Atomic orbital electron populations 1.69702 1.05108 1.25959 1.57077 1.24670 0.95250 0.97252 1.01668 0.86590 0.79450 0.84960 0.77864 1.20941 1.20126 1.21554 1.19091 0.80309 0.94881 1.43575 0.88954 1.42545 1.04075 1.01560 1.88844 1.20864 0.89708 0.90174 0.92873 0.90583 1.24316 0.96773 0.99148 1.02196 1.22692 0.81168 0.98699 0.95723 0.87285 1.46119 1.22277 1.29444 1.39172 1.20593 0.85650 0.84719 0.79428 1.90709 1.73258 1.24835 1.52682 1.21233 0.94513 0.99827 0.99495 1.22062 0.97990 1.00871 0.94893 1.23025 1.02385 1.01659 0.94459 1.22993 0.91131 1.03437 1.04352 1.23888 0.99090 1.01801 0.95648 0.92953 0.80383 0.90879 0.90892 0.76950 0.88665 0.88955 0.86393 0.88857 0.88764 0.88759 0.88848 0.91007 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.49 27.74 -169.99 -4.71 17.77 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.76 6.52 56.52 0.37 -6.40 16 6 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 7 C -0.25 -7.04 10.45 -15.06 -0.16 -7.19 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.73 -17.32 5.11 -52.64 -0.27 -17.59 16 10 C 0.18 3.29 4.55 -67.12 -0.31 2.99 16 11 H 0.08 1.42 8.11 -51.93 -0.42 0.99 16 12 C -0.18 -3.08 7.70 -25.78 -0.20 -3.28 16 13 C 0.12 1.90 4.13 -66.98 -0.28 1.62 16 14 H 0.11 2.06 7.46 -51.93 -0.39 1.68 16 15 N -0.72 -8.78 5.36 -52.88 -0.28 -9.06 16 16 C 0.51 6.90 7.83 -10.99 -0.09 6.81 16 17 O -0.54 -9.91 15.16 5.56 0.08 -9.83 16 18 C -0.11 -1.01 5.98 -27.88 -0.17 -1.18 16 19 C -0.14 -1.41 5.41 -90.62 -0.49 -1.90 16 20 C -0.18 -1.58 10.18 -26.74 -0.27 -1.85 16 21 C -0.18 -1.41 10.25 -26.74 -0.27 -1.69 16 22 C -0.16 -2.40 7.57 -25.91 -0.20 -2.60 16 23 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 24 H 0.36 8.59 5.76 -40.82 -0.24 8.36 16 25 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.40 3.40 8.73 -40.82 -0.36 3.04 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 0.67 7.87 -51.93 -0.41 0.26 16 30 H 0.12 1.47 7.30 -51.93 -0.38 1.09 16 31 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 32 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.08 0.96 8.12 -51.93 -0.42 0.53 16 LS Contribution 302.38 15.07 4.56 4.56 Total: -1.00 -33.60 302.38 -7.95 -41.55 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -5.58 Total: 9.33 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.52 Total: -8.14 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: 0.22 Total: -55.25 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -33.60 -7.95 -41.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019926218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.879 kcal (2) G-P(sol) polarization free energy of solvation -33.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds