Wall clock time and date at job start Sun Mar 29 2020 22:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47326 * 89.99918 * 3 2 1 5 5 H 1.48506 * 109.46545 * 209.99668 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99379 * 3 2 1 7 7 C 1.38812 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00285 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99632 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99938 * 180.02562 * 9 7 2 11 11 H 1.08995 * 112.85392 * 334.66983 * 10 9 7 12 12 C 1.53784 * 113.61474 * 105.86333 * 10 9 7 13 13 C 1.54043 * 86.99013 * 89.16298 * 12 10 9 14 14 H 1.09000 * 113.69111 * 270.87880 * 13 12 10 15 15 N 1.46499 * 113.62500 * 139.97991 * 13 12 10 16 16 C 1.34770 * 119.99991 * 107.50378 * 15 13 12 17 17 O 1.21276 * 120.00342 * 0.02562 * 16 15 13 18 18 C 1.50705 * 119.99609 * 180.02562 * 16 15 13 19 19 C 1.53005 * 109.46944 * 179.97438 * 18 16 15 20 20 C 1.52996 * 117.50365 * 243.62262 * 19 18 16 21 21 C 1.52994 * 60.00011 * 252.51083 * 20 19 18 22 22 C 1.53784 * 87.07706 * 25.43131 * 13 12 10 23 23 H 0.97005 * 119.99717 * 0.02562 * 1 2 3 24 24 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 25 25 H 1.09000 * 113.61638 * 203.67079 * 12 10 9 26 26 H 1.09002 * 113.61479 * 334.56726 * 12 10 9 27 27 H 0.96999 * 119.99301 * 287.50681 * 15 13 12 28 28 H 1.08994 * 109.47372 * 300.00114 * 18 16 15 29 29 H 1.08998 * 109.46926 * 60.00612 * 18 16 15 30 30 H 1.08999 * 115.54785 * 29.33632 * 19 18 16 31 31 H 1.09002 * 117.49527 * 0.02562 * 20 19 18 32 32 H 1.08997 * 117.49951 * 145.01811 * 20 19 18 33 33 H 1.08998 * 117.49937 * 252.50512 * 21 20 19 34 34 H 1.09005 * 117.49905 * 107.48480 * 21 20 19 35 35 H 1.08995 * 113.61669 * 220.02958 * 22 13 12 36 36 H 1.08998 * 113.61239 * 89.12038 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4000 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7002 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4710 0.0011 11 1 3.5373 -3.2916 0.4304 12 6 4.7541 -2.8116 -1.3542 13 6 5.9934 -2.0350 -0.8704 14 1 5.9641 -0.9716 -1.1081 15 7 7.2628 -2.6658 -1.2402 16 6 8.0316 -2.1194 -2.2029 17 8 7.6728 -1.1052 -2.7627 18 6 9.3372 -2.7687 -2.5836 19 6 10.0074 -1.9546 -3.6923 20 6 10.2016 -2.6344 -5.0491 21 6 11.4058 -2.3860 -4.1387 22 6 5.5392 -2.3584 0.5628 23 1 -0.4850 0.8401 -0.0004 24 1 3.8646 -0.3622 0.0007 25 1 4.9346 -3.8771 -1.4963 26 1 4.2516 -2.3494 -2.2039 27 1 7.5499 -3.4768 -0.7922 28 1 9.9920 -2.8058 -1.7131 29 1 9.1489 -3.7814 -2.9402 30 1 9.7865 -0.8873 -3.6908 31 1 9.8515 -3.6615 -5.1521 32 1 10.1083 -2.0144 -5.9407 33 1 12.1048 -1.6025 -4.4312 34 1 11.8483 -3.2498 -3.6425 35 1 5.6700 -1.5306 1.2596 36 1 5.9340 -3.3003 0.9438 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019926218.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:49:13 Heat of formation + Delta-G solvation = -7.810444 kcal Electronic energy + Delta-G solvation = -16537.441999 eV Core-core repulsion = 13829.193533 eV Total energy + Delta-G solvation = -2708.248466 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14859 -39.62987 -37.86802 -35.79530 -34.28637 -32.40230 -30.31075 -26.54508 -26.17472 -24.31526 -23.21655 -22.25361 -21.05879 -20.44328 -19.62623 -18.13506 -17.54535 -16.65626 -16.48138 -16.05876 -16.02305 -15.00995 -14.87936 -14.70024 -14.56788 -13.91442 -13.74736 -13.44735 -13.20242 -12.90487 -12.54457 -12.39121 -12.30698 -12.23431 -11.87099 -11.79011 -11.37591 -11.29675 -10.99398 -10.91494 -10.67122 -9.95951 -9.33597 -8.06662 -5.39822 1.34371 1.37005 1.43229 1.68417 2.25589 2.43817 2.94730 3.23391 3.47492 3.67010 3.77842 3.80961 3.82869 4.06801 4.17113 4.23381 4.25348 4.57469 4.67521 4.76893 4.81107 4.81799 4.84072 4.98649 5.05832 5.10809 5.21404 5.27234 5.28236 5.37766 5.64741 5.77021 6.19245 6.66623 7.03595 7.36777 7.80952 7.96953 9.14678 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.039160 B = 0.004641 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.837012 B = 6031.323544 C = 6383.685845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.948 3.052 4 H -0.272 1.272 5 H -0.265 1.265 6 H -0.295 1.295 7 C -0.232 4.232 8 H 0.065 0.935 9 N -0.739 5.739 10 C 0.150 3.850 11 H 0.077 0.923 12 C -0.173 4.173 13 C 0.126 3.874 14 H 0.072 0.928 15 N -0.703 5.703 16 C 0.503 3.497 17 O -0.596 6.596 18 C -0.097 4.097 19 C -0.165 4.165 20 C -0.187 4.187 21 C -0.159 4.159 22 C -0.135 4.135 23 H 0.259 0.741 24 H 0.363 0.637 25 H 0.107 0.893 26 H 0.035 0.965 27 H 0.420 0.580 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.117 0.883 35 H 0.069 0.931 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.175 -10.317 -2.971 27.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.252 4.252 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.190 1.190 6 H -0.221 1.221 7 C -0.363 4.363 8 H 0.083 0.917 9 N -0.380 5.380 10 C 0.040 3.960 11 H 0.095 0.905 12 C -0.215 4.215 13 C 0.020 3.980 14 H 0.090 0.910 15 N -0.354 5.354 16 C 0.292 3.708 17 O -0.477 6.477 18 C -0.136 4.136 19 C -0.183 4.183 20 C -0.224 4.224 21 C -0.196 4.196 22 C -0.174 4.174 23 H 0.067 0.933 24 H 0.196 0.804 25 H 0.125 0.875 26 H 0.054 0.946 27 H 0.258 0.742 28 H 0.144 0.856 29 H 0.138 0.862 30 H 0.102 0.898 31 H 0.125 0.875 32 H 0.103 0.897 33 H 0.115 0.885 34 H 0.135 0.865 35 H 0.088 0.912 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 24.701 -9.686 -3.339 26.741 hybrid contribution -0.301 1.203 -0.153 1.249 sum 24.399 -8.483 -3.492 26.067 Atomic orbital electron populations 1.69864 1.06906 1.26657 1.59673 1.25428 0.96065 1.00930 1.02758 0.85510 0.78274 0.80307 0.78297 1.19738 1.18992 1.22150 1.19104 0.82415 0.93691 1.41071 0.91742 1.42569 1.02574 1.03628 1.89202 1.21231 0.91710 0.88134 0.94893 0.90519 1.24217 0.96823 1.01034 0.99396 1.22275 0.82407 0.96810 0.96465 0.91023 1.45887 1.20727 1.29916 1.38911 1.21479 0.86849 0.83976 0.78542 1.90697 1.74752 1.27580 1.54679 1.21253 0.91979 1.00119 1.00266 1.22008 1.00567 0.99460 0.96315 1.23126 1.03457 1.02020 0.93756 1.23083 0.89990 1.03915 1.02625 1.23729 0.94983 1.04035 0.94677 0.93257 0.80378 0.87506 0.94645 0.74187 0.85615 0.86171 0.89821 0.87540 0.89654 0.88497 0.86471 0.91196 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.77 13.97 21.65 0.30 -63.46 16 2 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 3 Si 0.95 47.39 27.74 68.60 1.90 49.29 16 4 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.26 -12.57 6.52 99.48 0.65 -11.92 16 6 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 7 C -0.23 -13.39 10.45 84.03 0.88 -12.51 16 8 H 0.06 4.01 8.06 -2.91 -0.02 3.98 16 9 N -0.74 -35.06 5.11 -320.45 -1.64 -36.69 16 10 C 0.15 5.42 4.55 45.52 0.21 5.63 16 11 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 12 C -0.17 -5.62 7.70 31.21 0.24 -5.38 16 13 C 0.13 3.72 4.13 45.61 0.19 3.91 16 14 H 0.07 2.72 7.46 -2.39 -0.02 2.70 16 15 N -0.70 -14.91 5.36 -439.62 -2.35 -17.27 16 16 C 0.50 12.67 7.83 87.66 0.69 13.35 16 17 O -0.60 -22.23 15.16 -3.02 -0.05 -22.28 16 18 C -0.10 -1.43 5.98 29.85 0.18 -1.25 16 19 C -0.16 -3.08 5.41 -10.79 -0.06 -3.13 16 20 C -0.19 -2.97 10.18 30.59 0.31 -2.66 16 21 C -0.16 -2.01 10.25 30.59 0.31 -1.70 16 22 C -0.14 -3.50 7.57 31.12 0.24 -3.26 16 23 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 24 H 0.36 17.07 5.76 -92.71 -0.53 16.53 16 25 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 26 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.42 5.06 8.73 -92.71 -0.81 4.25 16 28 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.12 1.16 7.87 -2.39 -0.02 1.14 16 30 H 0.08 2.15 7.30 -2.39 -0.02 2.13 16 31 H 0.11 1.39 8.03 -2.39 -0.02 1.37 16 32 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.13 2.22 8.12 -2.39 -0.02 2.20 16 Total: -1.00 -77.53 302.38 1.49 -76.04 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.32 Total: 24.52 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 3.65 Total: -10.16 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -3.69 Total: -117.42 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.05 Total: -22.28 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.90 Total: 49.29 kcal Total: -77.53 1.49 -76.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019926218.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.232 kcal (2) G-P(sol) polarization free energy of solvation -77.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds