Wall clock time and date at job start Sun Mar 29 2020 22:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00187 * 2 1 4 4 H 1.48497 * 109.47448 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47030 * 300.00652 * 3 2 1 6 6 H 1.48502 * 109.47054 * 60.00108 * 3 2 1 7 7 C 1.38814 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00471 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99711 * 359.97438 * 7 2 1 10 10 C 1.46497 * 119.99975 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.85285 * 23.80711 * 10 9 7 12 12 C 1.53784 * 113.61742 * 155.00333 * 10 9 7 13 13 C 1.53779 * 87.08158 * 89.20020 * 12 10 9 14 14 H 1.08994 * 113.61287 * 140.06859 * 13 12 10 15 15 N 1.46507 * 113.61340 * 270.88653 * 13 12 10 16 16 C 1.34777 * 119.99632 * 203.46966 * 15 13 12 17 17 O 1.21282 * 120.00265 * 0.02562 * 16 15 13 18 18 C 1.50700 * 119.99741 * 179.97438 * 16 15 13 19 19 C 1.53781 * 113.61455 * 180.02562 * 18 16 15 20 20 C 1.53786 * 87.17350 * 270.84572 * 19 18 16 21 21 C 1.53782 * 113.61177 * 82.50351 * 18 16 15 22 22 C 1.53777 * 87.17374 * 25.47760 * 13 12 10 23 23 H 0.97003 * 120.00161 * 359.97438 * 1 2 3 24 24 H 0.97005 * 120.00318 * 0.02562 * 9 7 2 25 25 H 1.09005 * 113.60883 * 334.64988 * 12 10 9 26 26 H 1.08997 * 113.69242 * 203.76595 * 12 10 9 27 27 H 0.97003 * 120.00110 * 23.46850 * 15 13 12 28 28 H 1.09001 * 112.90802 * 311.25695 * 18 16 15 29 29 H 1.09002 * 113.61445 * 25.43572 * 19 18 16 30 30 H 1.09002 * 113.61408 * 156.25302 * 19 18 16 31 31 H 1.08993 * 113.61491 * 89.15923 * 20 19 18 32 32 H 1.09000 * 113.61138 * 220.06261 * 20 19 18 33 33 H 1.08997 * 113.61668 * 203.66205 * 21 18 16 34 34 H 1.08998 * 113.61674 * 334.48714 * 21 18 16 35 35 H 1.08998 * 113.61491 * 89.06957 * 22 13 12 36 36 H 1.08997 * 113.61545 * 219.97816 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 1 3.0656 -3.5638 0.4049 12 6 1.2602 -4.8288 0.5949 13 6 0.7223 -5.0805 -0.8236 14 1 0.6500 -6.1369 -1.0821 15 7 -0.5018 -4.3353 -1.1278 16 6 -1.3378 -4.7760 -2.0888 17 8 -1.0769 -5.7898 -2.7013 18 6 -2.5973 -4.0098 -2.4013 19 6 -3.4417 -4.6426 -3.5200 20 6 -2.6219 -3.7999 -4.5113 21 6 -2.3749 -2.8195 -3.3493 22 6 2.0009 -4.4046 -1.3462 23 1 -0.4850 0.8401 0.0004 24 1 0.3556 -2.3881 -0.0005 25 1 0.4928 -4.5188 1.3043 26 1 1.8859 -5.6366 0.9744 27 1 -0.7107 -3.5247 -0.6376 28 1 -3.1722 -3.7569 -1.5104 29 1 -3.2884 -5.7163 -3.6286 30 1 -4.4957 -4.3674 -3.4803 31 1 -1.7177 -4.2966 -4.8631 32 1 -3.2165 -3.3775 -5.3213 33 1 -3.1370 -2.0450 -3.2639 34 1 -1.3609 -2.4208 -3.3192 35 1 2.8299 -5.0960 -1.4970 36 1 1.8311 -3.7523 -2.2028 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021759760.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:57:09 Heat of formation + Delta-G solvation = 14.510150 kcal Electronic energy + Delta-G solvation = -17458.449293 eV Core-core repulsion = 14751.168720 eV Total energy + Delta-G solvation = -2707.280572 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.24820 -38.62062 -36.55401 -33.63351 -32.52661 -29.94190 -26.55170 -25.41100 -25.11466 -24.37121 -22.75110 -20.91972 -19.26823 -18.50259 -17.36894 -16.64185 -15.63973 -15.34884 -14.87014 -14.60434 -14.35870 -13.69087 -13.55867 -13.04159 -12.77370 -12.28059 -12.12647 -12.02648 -11.71603 -11.46323 -10.93802 -10.84078 -10.79820 -10.24217 -10.19692 -10.18164 -10.15659 -9.87699 -9.59374 -9.35716 -8.96093 -8.50432 -7.08965 -5.89268 -3.17916 2.96388 3.37327 3.43805 3.45467 3.53144 4.50041 4.72104 4.82661 4.93010 5.04444 5.09042 5.27231 5.39428 5.42440 5.52785 5.77994 5.84026 5.84914 5.95193 5.96096 6.11012 6.14133 6.25036 6.27562 6.31378 6.32819 6.54447 6.59548 6.71228 6.84429 7.15568 7.63945 7.97520 8.30218 8.63718 9.40732 9.95379 10.28844 11.33446 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.021909 B = 0.007833 C = 0.006188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.694221 B = 3573.702074 C = 4523.774609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.074 0.926 9 N -0.704 5.704 10 C 0.164 3.836 11 H 0.066 0.934 12 C -0.168 4.168 13 C 0.123 3.877 14 H 0.089 0.911 15 N -0.698 5.698 16 C 0.535 3.465 17 O -0.553 6.553 18 C -0.141 4.141 19 C -0.120 4.120 20 C -0.142 4.142 21 C -0.122 4.122 22 C -0.187 4.187 23 H 0.256 0.744 24 H 0.379 0.621 25 H 0.070 0.930 26 H 0.090 0.910 27 H 0.408 0.592 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.090 -7.860 -3.151 9.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.092 0.908 9 N -0.344 5.344 10 C 0.052 3.948 11 H 0.084 0.916 12 C -0.208 4.208 13 C 0.018 3.982 14 H 0.107 0.893 15 N -0.350 5.350 16 C 0.322 3.678 17 O -0.432 6.432 18 C -0.162 4.162 19 C -0.158 4.158 20 C -0.179 4.179 21 C -0.160 4.160 22 C -0.229 4.229 23 H 0.066 0.934 24 H 0.214 0.786 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.247 0.753 28 H 0.116 0.884 29 H 0.097 0.903 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.084 0.916 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.781 -8.392 -3.551 9.865 hybrid contribution 0.035 1.392 0.270 1.418 sum -3.746 -7.000 -3.281 8.590 Atomic orbital electron populations 1.69630 1.05077 1.25816 1.57541 1.24743 0.95600 0.97776 1.02613 0.86086 0.78850 0.83861 0.77185 1.20509 1.21834 1.21806 1.19335 0.91245 0.83789 1.42947 0.90795 1.42223 1.05248 0.99669 1.87299 1.21253 0.95311 0.85535 0.92693 0.91595 1.23858 1.00770 1.00451 0.95680 1.21755 0.84284 0.95661 0.96537 0.89309 1.45852 1.22029 1.28964 1.38199 1.20036 0.84205 0.84587 0.79019 1.90621 1.75875 1.25849 1.50840 1.22394 0.95486 0.98513 0.99806 1.22728 0.97744 1.00786 0.94527 1.22925 1.00609 0.97665 0.96699 1.22830 1.03470 0.95299 0.94363 1.24322 0.96467 1.00258 1.01864 0.93407 0.78571 0.91115 0.89190 0.75345 0.88359 0.90341 0.89819 0.89960 0.91595 0.89176 0.90425 0.90529 0.91168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.40 13.06 55.49 0.72 -25.68 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 8 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.70 -16.67 5.19 -52.50 -0.27 -16.94 16 10 C 0.16 3.18 4.57 -66.97 -0.31 2.87 16 11 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 12 C -0.17 -2.70 7.58 -25.92 -0.20 -2.90 16 13 C 0.12 2.11 4.30 -67.12 -0.29 1.82 16 14 H 0.09 1.51 7.50 -51.93 -0.39 1.12 16 15 N -0.70 -12.37 5.12 -53.02 -0.27 -12.64 16 16 C 0.54 9.46 7.09 -10.99 -0.08 9.38 16 17 O -0.55 -11.08 15.38 5.56 0.09 -11.00 16 18 C -0.14 -2.08 4.34 -90.96 -0.39 -2.47 16 19 C -0.12 -1.56 7.45 -25.92 -0.19 -1.76 16 20 C -0.14 -1.91 7.75 -25.79 -0.20 -2.11 16 21 C -0.12 -1.78 7.67 -25.79 -0.20 -1.98 16 22 C -0.19 -3.36 7.70 -25.78 -0.20 -3.56 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 24 H 0.38 9.16 5.35 -40.82 -0.22 8.94 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.41 7.56 6.17 -40.82 -0.25 7.31 16 28 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.08 1.11 7.43 -51.93 -0.39 0.72 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.08 1.32 8.09 -51.93 -0.42 0.90 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 295.52 15.07 4.45 4.45 Total: -1.00 -29.46 295.52 -8.04 -37.50 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -5.43 Total: 15.34 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -2.30 Total: -7.71 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.18 Total: -55.26 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -11.00 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.46 -8.04 -37.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021759760.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.012 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds